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(parent: 9210a5f) | patch
Included EBSeq for downstream differential expression analysis
authorBo Li <bli@cs.wisc.edu>
Thu, 26 Apr 2012 13:50:22 +0000 (08:50 -0500)
committerBo Li <bli@cs.wisc.edu>
Thu, 26 Apr 2012 13:50:22 +0000 (08:50 -0500)
commit4496388fd52d4354c746f36b1998477f31c2b0dd
tree2d36173923847afed2958718bbd4657bc6722800tree | snapshot
parent9210a5fece7ec2854eb834d5b2dcbe2d12fbebf1commit | diff
Included EBSeq for downstream differential expression analysis
101 files changed:
EBSeq/DESCRIPTION [new file with mode: 0644] blob
EBSeq/NAMESPACE [new file with mode: 0644] blob
EBSeq/R/CheckNg.R [new file with mode: 0644] blob
EBSeq/R/DenNHist.R [new file with mode: 0644] blob
EBSeq/R/DenNHistTable.R [new file with mode: 0644] blob
EBSeq/R/EBMultiTest.R [new file with mode: 0644] blob
EBSeq/R/EBTest.R [new file with mode: 0644] blob
EBSeq/R/GeneMultiSimu.R [new file with mode: 0644] blob
EBSeq/R/GeneSimu.R [new file with mode: 0644] blob
EBSeq/R/GeneSimuAt.R [new file with mode: 0644] blob
EBSeq/R/GetData.R [new file with mode: 0644] blob
EBSeq/R/GetMultiPP.R [new file with mode: 0644] blob
EBSeq/R/GetNg.R [new file with mode: 0644] blob
EBSeq/R/GetPP.R [new file with mode: 0644] blob
EBSeq/R/GetPatterns.R [new file with mode: 0644] blob
EBSeq/R/IsoSimu.R [new file with mode: 0644] blob
EBSeq/R/IsoSimuAt.R [new file with mode: 0644] blob
EBSeq/R/Likefun.R [new file with mode: 0644] blob
EBSeq/R/LikefunMulti.R [new file with mode: 0644] blob
EBSeq/R/LikefunMultiDVDP.R [new file with mode: 0644] blob
EBSeq/R/LikefunMultiEMP.R [new file with mode: 0644] blob
EBSeq/R/LogN.R [new file with mode: 0644] blob
EBSeq/R/LogNMulti.R [new file with mode: 0644] blob
EBSeq/R/LogNMultiDVDP.R [new file with mode: 0644] blob
EBSeq/R/LogNMultiEMP.R [new file with mode: 0644] blob
EBSeq/R/MedianNorm.R [new file with mode: 0644] blob
EBSeq/R/MergeGene.R [new file with mode: 0644] blob
EBSeq/R/MergeIso.R [new file with mode: 0644] blob
EBSeq/R/PlotFDTP.R [new file with mode: 0644] blob
EBSeq/R/PlotFPTP.R [new file with mode: 0644] blob
EBSeq/R/PlotPattern.R [new file with mode: 0644] blob
EBSeq/R/PlotTopCts.R [new file with mode: 0644] blob
EBSeq/R/PolyFitPlot.R [new file with mode: 0644] blob
EBSeq/R/PoolMatrix.R [new file with mode: 0644] blob
EBSeq/R/PostFC.R [new file with mode: 0644] blob
EBSeq/R/QQP.R [new file with mode: 0644] blob
EBSeq/R/QuantileNorm.R [new file with mode: 0644] blob
EBSeq/R/RankNorm.R [new file with mode: 0644] blob
EBSeq/R/TPFDRplot.R [new file with mode: 0644] blob
EBSeq/R/TopCts.R [new file with mode: 0644] blob
EBSeq/R/beta.mom.R [new file with mode: 0644] blob
EBSeq/R/crit_fun.R [new file with mode: 0644] blob
EBSeq/R/f0.R [new file with mode: 0644] blob
EBSeq/R/f1.R [new file with mode: 0644] blob
EBSeq/data/GeneEBresultGouldBart2.rda [new file with mode: 0644] blob
EBSeq/data/GeneMat.rda [new file with mode: 0644] blob
EBSeq/data/IsoEBresultGouldBart2.rda [new file with mode: 0644] blob
EBSeq/data/IsoList.rda [new file with mode: 0644] blob
EBSeq/data/MultiGeneMat.rda [new file with mode: 0644] blob
EBSeq/data/datalist [new file with mode: 0644] blob
EBSeq/demo/EBSeq.R [new file with mode: 0644] blob
EBSeq/inst/doc/EBSeq_Vignette.pdf [new file with mode: 0644] blob
EBSeq/man/CheckNg.Rd [new file with mode: 0644] blob
EBSeq/man/DenNHist.Rd [new file with mode: 0644] blob
EBSeq/man/DenNHistTable.Rd [new file with mode: 0644] blob
EBSeq/man/EBMultiTest.Rd [new file with mode: 0644] blob
EBSeq/man/EBSeq_NingLeng-package.Rd [new file with mode: 0644] blob
EBSeq/man/EBTest.Rd [new file with mode: 0644] blob
EBSeq/man/GeneEBresultGouldBart2.Rd [new file with mode: 0644] blob
EBSeq/man/GeneMultiSimu.Rd [new file with mode: 0644] blob
EBSeq/man/GeneSimu.Rd [new file with mode: 0644] blob
EBSeq/man/GeneSimuAt.Rd [new file with mode: 0644] blob
EBSeq/man/GetData.Rd [new file with mode: 0644] blob
EBSeq/man/GetMultiPP.Rd [new file with mode: 0644] blob
EBSeq/man/GetNg.Rd [new file with mode: 0644] blob
EBSeq/man/GetPP.Rd [new file with mode: 0644] blob
EBSeq/man/GetPatterns.Rd [new file with mode: 0644] blob
EBSeq/man/IsoEBresultGouldBart2.Rd [new file with mode: 0644] blob
EBSeq/man/IsoSimu.Rd [new file with mode: 0644] blob
EBSeq/man/IsoSimuAt.Rd [new file with mode: 0644] blob
EBSeq/man/Likefun.Rd [new file with mode: 0644] blob
EBSeq/man/LikefunMulti.Rd [new file with mode: 0644] blob
EBSeq/man/LogN.Rd [new file with mode: 0644] blob
EBSeq/man/LogNMulti.Rd [new file with mode: 0644] blob
EBSeq/man/MedianNorm.Rd [new file with mode: 0644] blob
EBSeq/man/MergeGene.Rd [new file with mode: 0644] blob
EBSeq/man/MergeIso.Rd [new file with mode: 0644] blob
EBSeq/man/PlotFDTP.Rd [new file with mode: 0644] blob
EBSeq/man/PlotFPTP.Rd [new file with mode: 0644] blob
EBSeq/man/PlotPattern.Rd [new file with mode: 0644] blob
EBSeq/man/PlotTopCts.Rd [new file with mode: 0644] blob
EBSeq/man/PolyFitPlot.Rd [new file with mode: 0644] blob
EBSeq/man/PoolMatrix.Rd [new file with mode: 0644] blob
EBSeq/man/PostFC.Rd [new file with mode: 0644] blob
EBSeq/man/QQP.Rd [new file with mode: 0644] blob
EBSeq/man/QuantileNorm.Rd [new file with mode: 0644] blob
EBSeq/man/RankNorm.Rd [new file with mode: 0644] blob
EBSeq/man/TPFDRplot.Rd [new file with mode: 0644] blob
EBSeq/man/TopCts.Rd [new file with mode: 0644] blob
EBSeq/man/beta.mom.Rd [new file with mode: 0644] blob
EBSeq/man/crit_fun.Rd [new file with mode: 0644] blob
EBSeq/man/f0.Rd [new file with mode: 0644] blob
EBSeq/man/f1.Rd [new file with mode: 0644] blob
README.md diff | blob | history
WHAT_IS_NEW diff | blob | history
calcClusteringInfo.cpp [new file with mode: 0644] blob
makefile diff | blob | history
rsem-calculate-expression diff | blob | history
rsem-for-ebseq-generate-ngvector-from-clustering-info [new file with mode: 0755] blob
rsem-form-counts-matrix [new file with mode: 0755] blob
rsem-generate-ngvector [new file with mode: 0755] blob
Debian packaging of rsem