EBSeq/R/DenNHistTable.R

   1 DenNHistTable <-
   2 function(QList,Alpha,Beta,AList="F")
   3 {
   4         par(mfrow=c(3,4))
   5         plot(1, type="n", axes=F, xlab="", ylab="", main="No 3' end  No 5' end",cex.main=1)
   6         plot(1, type="n", axes=F, xlab="", ylab="",main="With 3' end No 5' end",cex.main=1)
   7         plot(1, type="n", axes=F, xlab="", ylab="",main="With 5' end No 3' end",cex.main=1)
   8         for (i in c(1,2,4,6,8)){
   9                  alpha.use=Alpha
  10         hist(QList[[i]][QList[[i]]<.98&QList[[i]]>0],prob=T,col="blue",breaks=100,main=ifelse(i==1,"With 5' end With 3' end",""),cex.main=1, xlim=c(0,1),xlab=paste("Q alpha=",round(alpha.use,2)," beta=",round(Beta[i],2),sep=""))
  11         if(i==1)mtext("Ng=1",side=4, cex=1)
  12         if(i==8)mtext("Ng=2", side=4,cex=1)
  13         tmpSize=length(QList[[i]][QList[[i]]<.98])
  14
  15         tmpseq=seq(0.001,1,length=1000)
  16         ll=tmpseq
  17                  lines(ll,dbeta(ll,alpha.use,Beta[i]),col="green",lwd=2)
  18         legend("topright",c("Data","Fitted density"),col=c("blue","green"),lwd=2,cex=.5)
  19 }
  20
  21         for (i in c(3,5,7,9)){
  22                  alpha.use=Alpha
  23         hist(QList[[i]][QList[[i]]<.98&QList[[i]]>0],prob=T,col="blue",breaks=100,main=ifelse(i==1,"With 5' end With 3' end exons",""),xlim=c(0,1),xlab=paste("Q alpha=",round(alpha.use,2)," beta=",round(Beta[i],2),sep=""))
  24         if(i==9)mtext("Ng=3", side=4,cex=1)
  25
  26         tmpSize=length(QList[[i]][QList[[i]]<.98])
  27
  28         tmpseq=seq(0.001,1,length=1000)
  29         ll=tmpseq
  30                  lines(ll,dbeta(ll,alpha.use,Beta[i]),col="green",lwd=2)
  31         legend("topright",c("Data","Fitted density"),col=c("blue","green"),cex=.5, lwd=2)
  32 }
  33
  34
  35
  36
  37         }
  38