Included EBSeq for downstream differential expression analysis

[rsem.git] / rsem-calculate-expression

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 2a09c1570ce7cd45a560b7587568ff106766fd75..074d895ecf173cad4d5b0866c42b463655365747 100755 (executable)
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -265,7 +265,7 @@ if ($genBamF) {
     else { $command .= " 0"; }
     if ($sampling) { $command .= " --sampling"; }
 }
-if ($calcCI) { $command .= " --gibbs-out"; }
+if ($calcCI || $var_opt) { $command .= " --gibbs-out"; }
 if ($quiet) { $command .= " -q"; }
 
 &runCommand($command);