]> git.donarmstrong.com Git - mothur.git/commit
added pipeline commands which involved change to command factory and command class...
authorwestcott <westcott>
Fri, 15 Oct 2010 16:46:19 +0000 (16:46 +0000)
committerwestcott <westcott>
Fri, 15 Oct 2010 16:46:19 +0000 (16:46 +0000)
commit8bc3e5b38c2317a1715f53be22fa96455868c281
tree9e3237d541b5e2da1df705713c5b3d2b2f3c6269
parentf663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2
added pipeline commands which involved change to command factory and command class. fixed bug in unifrac.unwieghted
186 files changed:
Mothur.xcodeproj/project.pbxproj
aligncommand.cpp
aligncommand.h
bayesian.cpp
binsequencecommand.cpp
binsequencecommand.h
bootstrapsharedcommand.cpp
bootstrapsharedcommand.h
catchallcommand.cpp
catchallcommand.h
chimerabellerophoncommand.cpp
chimerabellerophoncommand.h
chimeraccodecommand.cpp
chimeraccodecommand.h
chimeracheckcommand.cpp
chimeracheckcommand.h
chimerapintailcommand.cpp
chimerapintailcommand.h
chimeraseqscommand.cpp
chimeraseqscommand.h
chimeraslayercommand.cpp
chimeraslayercommand.h
chopseqscommand.cpp
chopseqscommand.h
classifyotucommand.cpp
classifyotucommand.h
classifyseqscommand.cpp
classifyseqscommand.h
clearcutcommand.cpp
clearcutcommand.h
clustercommand.cpp
clustercommand.h
clusterfragmentscommand.cpp
clusterfragmentscommand.h
clustersplitcommand.cpp
clustersplitcommand.h
collectcommand.cpp
collectcommand.h
collectsharedcommand.cpp
collectsharedcommand.h
command.hpp
commandfactory.cpp
commandfactory.hpp
consensuscommand.cpp
consensuscommand.h
deconvolutecommand.cpp
deconvolutecommand.h
degapseqscommand.cpp
degapseqscommand.h
distancecommand.cpp
distancecommand.h
eachgapignore.h
fastamap.cpp
filterseqscommand.cpp
filterseqscommand.h
getgroupcommand.cpp
getgroupcommand.h
getlabelcommand.cpp
getlabelcommand.h
getlineagecommand.cpp
getlineagecommand.h
getlistcountcommand.cpp
getlistcountcommand.h
getoturepcommand.cpp
getoturepcommand.h
getrabundcommand.cpp
getrabundcommand.h
getrelabundcommand.cpp
getrelabundcommand.h
getsabundcommand.cpp
getsabundcommand.h
getseqscommand.cpp
getseqscommand.h
getsharedotucommand.cpp
getsharedotucommand.h
hclustercommand.cpp
hclustercommand.h
heatmapcommand.cpp
heatmapcommand.h
heatmapsimcommand.cpp
heatmapsimcommand.h
helpcommand.cpp
helpcommand.h
ignoregaps.h
libshuffcommand.cpp
libshuffcommand.h
listseqscommand.cpp
listseqscommand.h
makegroupcommand.cpp
makegroupcommand.h
matrixoutputcommand.cpp
matrixoutputcommand.h
mergefilecommand.cpp
mergefilecommand.h
metastatscommand.cpp
metastatscommand.h
mgclustercommand.cpp
mgclustercommand.h
mothur
mothurout.cpp
mothurout.h
nocommands.cpp
nocommands.h
normalizesharedcommand.cpp
normalizesharedcommand.h
onegapignore.h
otuhierarchycommand.cpp
otuhierarchycommand.h
parsefastaqcommand.cpp
parsefastaqcommand.h
parselistscommand.cpp
parselistscommand.h
parsesffcommand.cpp
parsesffcommand.h
parsimonycommand.cpp
parsimonycommand.h
pcacommand.cpp
pcacommand.h
phylodiversitycommand.cpp
phylodiversitycommand.h
phylotypecommand.cpp
phylotypecommand.h
pipelinepdscommand.cpp [new file with mode: 0644]
pipelinepdscommand.h [new file with mode: 0644]
preclustercommand.cpp
preclustercommand.h
quitcommand.cpp
quitcommand.h
rarefactcommand.cpp
rarefactcommand.h
rarefactsharedcommand.cpp
rarefactsharedcommand.h
readdistcommand.cpp
readdistcommand.h
readotucommand.cpp
readotucommand.h
readtreecommand.cpp
readtreecommand.h
removelineagecommand.cpp
removelineagecommand.h
removeseqscommand.cpp
removeseqscommand.h
reversecommand.cpp
reversecommand.h
screenseqscommand.cpp
screenseqscommand.h
secondarystructurecommand.cpp
secondarystructurecommand.h
sensspeccommand.cpp
sensspeccommand.h
seqerrorcommand.cpp
seqerrorcommand.h
seqsummarycommand.cpp
seqsummarycommand.h
setdircommand.cpp
setdircommand.h
setlogfilecommand.cpp
setlogfilecommand.h
sffinfocommand.cpp
sffinfocommand.h
sharedcommand.cpp
sharedcommand.h
splitabundcommand.cpp
splitabundcommand.h
splitgroupscommand.cpp
splitgroupscommand.h
splitmatrix.cpp
splitmatrix.h
summarycommand.cpp
summarycommand.h
summarysharedcommand.cpp
summarysharedcommand.h
systemcommand.cpp
systemcommand.h
treegroupscommand.cpp
treegroupscommand.h
trimseqscommand.cpp
trimseqscommand.h
unifracunweightedcommand.cpp
unifracunweightedcommand.h
unifracweightedcommand.cpp
unifracweightedcommand.h
unweighted.cpp
validparameter.cpp
venncommand.cpp
venncommand.h