added pipeline commands which involved change to command factory and command class...

[mothur.git] / splitabundcommand.h

diff --git a/splitabundcommand.h b/splitabundcommand.h
index df5bd55305a502803a8c1bfe36f24d60474061bb..02d61f3dc3b7f343a9e0d9a73bb71e84fcdacbbd 100644 (file)
--- a/splitabundcommand.h
+++ b/splitabundcommand.h
@@ -28,7 +28,12 @@ class SplitAbundCommand : public Command {
        
 public:
        SplitAbundCommand(string);      
+       SplitAbundCommand();
        ~SplitAbundCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();  
        void help();
 
@@ -45,6 +50,7 @@ private:
        int createNameMap(ListVector*);
        
        vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        ListVector* list;
        GroupMap* groupMap;
        InputData* input;