added pipeline commands which involved change to command factory and command class...

[mothur.git] / helpcommand.h

diff --git a/helpcommand.h b/helpcommand.h
index 7a19ee66f1f747295e7b299c281f85e121edc26e..d4e7b1fda16a88f8e88a30a46ba70e50fe1ce290 100644 (file)
--- a/helpcommand.h
+++ b/helpcommand.h
@@ -18,12 +18,19 @@ class HelpCommand : public Command {
        
 public:
        HelpCommand(string);
+       HelpCommand() {}
        ~HelpCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help() {};
        
 private:
        CommandFactory* validCommands;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        
        
 private: