added pipeline commands which involved change to command factory and command class...

[mothur.git] / getlistcountcommand.h

diff --git a/getlistcountcommand.h b/getlistcountcommand.h
index e238cf5fc8086f5ec29e6f419f6be0ec2c711e18..60d28cc6a351011fdc34af98189025af5d26f487 100644 (file)
--- a/getlistcountcommand.h
+++ b/getlistcountcommand.h
@@ -21,8 +21,13 @@ class GlobalData;
 class GetListCountCommand : public Command {
        
 public:
-       GetListCountCommand(string);    
+       GetListCountCommand(string);
+       GetListCountCommand();  
        ~GetListCountCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();    
        
@@ -37,6 +42,7 @@ private:
        string label, listfile, outputDir, sort;
        ofstream out;
        vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        
        void process(ListVector*);
 };