added pipeline commands which involved change to command factory and command class...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 2244eeef21b571ed94bcd8a12820e76416e5b7b8..9921a40dccec386ad1266e9954ed72686f7be130 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -27,6 +27,8 @@ class MothurOut {
                void closeLog();
                string getDefaultPath() { return defaultPath; }
                void setDefaultPath(string);
+               string getOutputDir() { return outputDir; }
+               void setOutputDir(string);
                
                string getReleaseDate() { return releaseDate; }
                void setReleaseDate(string r) { releaseDate = r; }
@@ -95,7 +97,7 @@ class MothurOut {
                ~MothurOut();
 
                string logFileName;
-               string defaultPath;
+               string defaultPath, outputDir;
                string releaseDate, version;
                
                ofstream out;