added pipeline commands which involved change to command factory and command class...

[mothur.git] / getgroupcommand.h

diff --git a/getgroupcommand.h b/getgroupcommand.h
index bc805bdc7ef5363b3c300b4bc980f535704ee0f7..fb3e810666320ea2cd1c32d4b14b0c2cac08c995 100644 (file)
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -16,7 +16,12 @@
 class GetgroupCommand : public Command {
 public:
        GetgroupCommand(string);
+       GetgroupCommand();
        ~GetgroupCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -24,6 +29,8 @@ private:
        GlobalData* globaldata;
        GroupMap* groupMap;
        string outputFile, sharedfile;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        ofstream out;
        ifstream in;
        bool abort;