added pipeline commands which involved change to command factory and command class...

[mothur.git] / venncommand.h

diff --git a/venncommand.h b/venncommand.h
index f6bdf395e20eeba3af9c7c7b4bba206daa9ebe56..29beeadc32f422f8b053e1da86f483032e496e8d 100644 (file)
--- a/venncommand.h
+++ b/venncommand.h
@@ -24,7 +24,12 @@ class VennCommand : public Command {
 
 public:
        VennCommand(string);
+       VennCommand();
        ~VennCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -44,7 +49,8 @@ private:
        bool abort, allLines, nseqs, perm;
        set<string> labels; //holds labels to be used
        string format, groups, calc, label, outputDir;
-       vector<string> Estimators, Groups;
+       vector<string> Estimators, Groups, outputNames;
+       map<string, vector<string> > outputTypes;
        
        set< set<int> > findCombinations(int);
        int getCombos(set<int>, set< set<int> >&);