added pipeline commands which involved change to command factory and command class...

[mothur.git] / splitgroupscommand.h

diff --git a/splitgroupscommand.h b/splitgroupscommand.h
index f6e8760e11ef8e02661dc275f22bc94414aa1517..c45c7ff6b386111ba34897c3e13ff213e832b79f 100644 (file)
--- a/splitgroupscommand.h
+++ b/splitgroupscommand.h
@@ -24,7 +24,12 @@ class SplitGroupCommand : public Command {
        
 public:
        SplitGroupCommand(string);      
+       SplitGroupCommand();
        ~SplitGroupCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();  
        void help();
 
@@ -34,6 +39,7 @@ private:
        int splitFasta(); 
        
        vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        map<string, vector<string> > nameMap;
        map<string, vector<string> >::iterator itNames;
        GroupMap* groupMap;