added pipeline commands which involved change to command factory and command class...

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index afbc2592a389f2faa971452d2fa12e3be4fa9680..7e51748b3b7c8b16bf983e44f0771275f7cd532f 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -18,12 +18,19 @@
 class ChimeraSeqsCommand : public Command {
 public:
        ChimeraSeqsCommand(string);
+       ChimeraSeqsCommand() {}
        ~ChimeraSeqsCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map< string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
                
 private:
+       vector<string> outputNames;
+       map< string, vector<string> > outputTypes;
 
 };