added pipeline commands which involved change to command factory and command class...

[mothur.git] / bootstrapsharedcommand.h

diff --git a/bootstrapsharedcommand.h b/bootstrapsharedcommand.h
index be4a7648825ba541a253daa74817b120ed087f57..53f6a26fd471d395a19d414af75640dc9bb0d62c 100644 (file)
--- a/bootstrapsharedcommand.h
+++ b/bootstrapsharedcommand.h
@@ -27,7 +27,12 @@ class BootSharedCommand : public Command {
        
 public:
        BootSharedCommand(string);      
+       BootSharedCommand();
        ~BootSharedCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();  
        void help();
        
@@ -59,6 +64,7 @@ private:
        string outputFile, calc, groups, label, outputDir;
        int numGroups, iters;
        vector<string>  Estimators, Groups, outputNames; //holds estimators to be used
+       map< string, vector<string> > outputTypes;
 
 };