added pipeline commands which involved change to command factory and command class...

[mothur.git] / unifracunweightedcommand.h

diff --git a/unifracunweightedcommand.h b/unifracunweightedcommand.h
index 3e6d8354af5eda2c21f85c632a09b886962afb37..91f005c2500b9011b9149f3b7a18996c00af5c6f 100644 (file)
--- a/unifracunweightedcommand.h
+++ b/unifracunweightedcommand.h
@@ -23,7 +23,12 @@ class UnifracUnweightedCommand : public Command {
        
        public:
                UnifracUnweightedCommand(string);       
+               UnifracUnweightedCommand();
                ~UnifracUnweightedCommand() { globaldata->Groups.clear();  if (abort == false) { delete unweighted; delete util; } }
+               vector<string> getRequiredParameters();
+               vector<string> getValidParameters();
+               vector<string> getRequiredFiles();
+               map<string, vector<string> > getOutputFiles() { return outputTypes; }
                int execute();
                void help();    
        
@@ -48,6 +53,7 @@ class UnifracUnweightedCommand : public Command {
                bool abort, phylip, random;
                string groups, itersString, outputDir;
                vector<string> Groups, outputNames; //holds groups to be used
+               map<string, vector<string> > outputTypes;
 
                ofstream outSum, out;
                ifstream inFile;