added pipeline commands which involved change to command factory and command class...

[mothur.git] / clustercommand.h

diff --git a/clustercommand.h b/clustercommand.h
index c8e01749de20baac9fe523e9cbf0b5f158b35941..787f835a0f33d1d157aeab41568286c28a752520 100644 (file)
--- a/clustercommand.h
+++ b/clustercommand.h
@@ -30,7 +30,12 @@ class ClusterCommand : public Command {
        
 public:
        ClusterCommand(string);
+       ClusterCommand();
        ~ClusterCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();  
        void help();
        
@@ -57,6 +62,7 @@ private:
        
        void printData(string label);
        vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
 };
 
 #endif