added pipeline commands which involved change to command factory and command class...

[mothur.git] / metastatscommand.h

diff --git a/metastatscommand.h b/metastatscommand.h
index 1c3f10cf49d915cb243e102ec0a7170f3ba90985..a38f3a7951c9629b680b4799c4a9ea00ea8d0270 100644 (file)
--- a/metastatscommand.h
+++ b/metastatscommand.h
@@ -21,7 +21,12 @@ class MetaStatsCommand : public Command {
 
 public:
        MetaStatsCommand(string);
+       MetaStatsCommand();
        ~MetaStatsCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -38,6 +43,7 @@ private:
        ReadOTUFile* read;
        InputData* input;
        vector<SharedRAbundVector*> lookup;
+       map<string, vector<string> > outputTypes;
        
        bool abort, allLines, pickedGroups;
        set<string> labels; //holds labels to be used