added pipeline commands which involved change to command factory and command class...

[mothur.git] / setdircommand.h

diff --git a/setdircommand.h b/setdircommand.h
index 330adf14ee11061c9b049b6aab2bde783113d6d0..1afab07244ef9f9464b98224249fea447f00402e 100644 (file)
--- a/setdircommand.h
+++ b/setdircommand.h
@@ -20,7 +20,12 @@ class SetDirectoryCommand : public Command {
        
 public:
        SetDirectoryCommand(string);
+       SetDirectoryCommand() {}
        ~SetDirectoryCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -28,6 +33,8 @@ private:
        CommandFactory* commandFactory;
        string output, input, tempdefault;
        bool abort;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
                
 };