added pipeline commands which involved change to command factory and command class...

[mothur.git] / reversecommand.h

diff --git a/reversecommand.h b/reversecommand.h
index 874bde62ff5f315d392fc3c51479099b41ada008..8b5bcd262528e36f756093a8236f8a1b3a447ce8 100644 (file)
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -15,7 +15,12 @@
 class ReverseSeqsCommand : public Command {
 public:
        ReverseSeqsCommand(string);
+       ReverseSeqsCommand();
        ~ReverseSeqsCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -23,6 +28,8 @@ private:
 
        bool abort;
        string fasta, outputDir;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        
 };