added pipeline commands which involved change to command factory and command class...

[mothur.git] / heatmapcommand.h

diff --git a/heatmapcommand.h b/heatmapcommand.h
index f3ae012fb7e5c161fc222e487d9d272acd8d0ff8..a85d510074c55a73adc25b07f16a8a81bdd4a30c 100644 (file)
--- a/heatmapcommand.h
+++ b/heatmapcommand.h
@@ -24,7 +24,12 @@ class HeatMapCommand : public Command {
 
 public:
        HeatMapCommand(string);
+       HeatMapCommand();
        ~HeatMapCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
@@ -42,6 +47,7 @@ private:
        set<string> labels; //holds labels to be used
        string format, groups, sorted, scale, label, outputDir;
        vector<string> Groups, outputNames;
+       map<string, vector<string> > outputTypes;
        int numOTU, fontSize;