added pipeline commands which involved change to command factory and command class...

[mothur.git] / systemcommand.cpp

diff --git a/systemcommand.cpp b/systemcommand.cpp
index 708724a4e5cd46643e7ec29464b61c1f34c7cd41..fb250d7fe96cb4ed38df8c0ce33d1c7e17911945 100644 (file)
--- a/systemcommand.cpp
+++ b/systemcommand.cpp
@@ -9,6 +9,39 @@
 
 #include "systemcommand.h"
 
+//**********************************************************************************************************************
+vector<string> SystemCommand::getValidParameters(){    
+       try {
+               vector<string> myArray;
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "SystemCommand", "getValidParameters");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
+vector<string> SystemCommand::getRequiredParameters(){ 
+       try {
+               vector<string> myArray;
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "SystemCommand", "getRequiredParameters");
+               exit(1);
+       }
+}
+//**********************************************************************************************************************
+vector<string> SystemCommand::getRequiredFiles(){      
+       try {
+               vector<string> myArray;
+               return myArray;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "SystemCommand", "getRequiredFiles");
+               exit(1);
+       }
+}
 //**********************************************************************************************************************
 
 SystemCommand::SystemCommand(string option)  {