git.donarmstrong.com Git - biopieces.git/commit

]> git.donarmstrong.com Git - biopieces.git/commit

author	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Fri, 8 Mar 2013 09:29:16 +0000 (09:29 +0000)
committer	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Fri, 8 Mar 2013 09:29:16 +0000 (09:29 +0000)
commit	4c74f0aa5b9a572a2552767d4c4c0c15166e092a
tree	1a64204a382cc62850ac1eee0aaa200efa876501	tree \| snapshot
parent	8bf958c931357441fca189e45986285e2d1f2476	commit \| diff

rewrite of FASTQ internals

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2111 74ccb610-7750-0410-82ae-013aeee3265d

68 files changed:

bp_bin/assemble_pairs		diff \| blob \| history
bp_bin/blast_seq		diff \| blob \| history
bp_bin/patscan_seq		diff \| blob \| history
bp_bin/read_fastq		diff \| blob \| history
bp_bin/scores_to_dec		diff \| blob \| history
bp_bin/trim_seq		diff \| blob \| history
bp_bin/write_fastq		diff \| blob \| history
bp_bin/write_fastq_files		diff \| blob \| history
bp_test/in/assemble_pairs.in		diff \| blob \| history
bp_test/in/mask_seq.in		diff \| blob \| history
bp_test/in/mean_scores.in		diff \| blob \| history
bp_test/in/read_fastq.in.1		diff \| blob \| history
bp_test/in/read_fastq.in.1.gz	[new file with mode: 0644]	blob
bp_test/in/read_fastq.in.2		diff \| blob \| history
bp_test/in/read_fastq.in.2.gz	[deleted file]	blob \| history
bp_test/in/trim_seq.in		diff \| blob \| history
bp_test/in/write_fastq.in		diff \| blob \| history
bp_test/in/write_fastq_files.in		diff \| blob \| history
bp_test/out/assemble_pairs.out.1		diff \| blob \| history
bp_test/out/assemble_pairs.out.2		diff \| blob \| history
bp_test/out/mask_seq.out.1		diff \| blob \| history
bp_test/out/mask_seq.out.2		diff \| blob \| history
bp_test/out/mask_seq.out.3		diff \| blob \| history
bp_test/out/mean_scores.out.1		diff \| blob \| history
bp_test/out/mean_scores.out.2		diff \| blob \| history
bp_test/out/mean_scores.out.3		diff \| blob \| history
bp_test/out/read_fastq.out.1		diff \| blob \| history
bp_test/out/read_fastq.out.2		diff \| blob \| history
bp_test/out/read_fastq.out.3		diff \| blob \| history
bp_test/out/scores_to_dec.out.1		diff \| blob \| history
bp_test/out/trim_seq.out.1		diff \| blob \| history
bp_test/out/trim_seq.out.2		diff \| blob \| history
bp_test/out/trim_seq.out.3		diff \| blob \| history
bp_test/out/trim_seq.out.4		diff \| blob \| history
bp_test/out/trim_seq.out.5		diff \| blob \| history
bp_test/out/trim_seq.out.6		diff \| blob \| history
bp_test/out/write_fastq.out.1		diff \| blob \| history
bp_test/out/write_fastq.out.2		diff \| blob \| history
bp_test/out/write_fastq_files.out.1/ILLUMINA-52179E.fastq	[deleted file]	blob \| history
bp_test/out/write_fastq_files.out.1/ILLUMINA.fastq	[deleted file]	blob \| history
bp_test/out/write_fastq_files.out.1/test.fastq	[new file with mode: 0644]	blob
bp_test/out/write_fastq_files.out.1/test2.fastq	[new file with mode: 0644]	blob
bp_test/out/write_fastq_files.out.2/test.fastq	[new file with mode: 0644]	blob
bp_test/out/write_fastq_files.out.2/test2.fastq	[new file with mode: 0644]	blob
bp_test/test/test_read_fastq		diff \| blob \| history
bp_test/test/test_write_fastq		diff \| blob \| history
bp_test/test/test_write_fastq_files		diff \| blob \| history
code_ruby/lib/maasha/seq.rb		diff \| blob \| history
code_ruby/test/helper.rb	[new file with mode: 0644]	blob
code_ruby/test/maasha/align/test_match.rb		diff \| blob \| history
code_ruby/test/maasha/align/test_matches.rb		diff \| blob \| history
code_ruby/test/maasha/align/test_mem.rb		diff \| blob \| history
code_ruby/test/maasha/seq/test_backtrack.rb		diff \| blob \| history
code_ruby/test/maasha/seq/test_digest.rb		diff \| blob \| history
code_ruby/test/maasha/seq/test_dynamic.rb		diff \| blob \| history
code_ruby/test/maasha/seq/test_trim.rb		diff \| blob \| history
code_ruby/test/maasha/test_base36.rb		diff \| blob \| history
code_ruby/test/maasha/test_biopieces.rb		diff \| blob \| history
code_ruby/test/maasha/test_bitarray.rb		diff \| blob \| history
code_ruby/test/maasha/test_bits.rb		diff \| blob \| history
code_ruby/test/maasha/test_boulder.rb		diff \| blob \| history
code_ruby/test/maasha/test_cigar.rb		diff \| blob \| history
code_ruby/test/maasha/test_fasta.rb		diff \| blob \| history
code_ruby/test/maasha/test_fastq.rb		diff \| blob \| history
code_ruby/test/maasha/test_locator.rb		diff \| blob \| history
code_ruby/test/maasha/test_math_aux.rb		diff \| blob \| history
code_ruby/test/maasha/test_sam.rb		diff \| blob \| history
code_ruby/test/maasha/test_seq.rb		diff \| blob \| history

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