rewrite of FASTQ internals

[biopieces.git] / code_ruby / test / maasha / align / test_match.rb

diff --git a/code_ruby/test/maasha/align/test_match.rb b/code_ruby/test/maasha/align/test_match.rb
index 40e84f28acaef8f8a403ea109f2a41e549228bfd..d239add39cb61eebef21f7b469aecabfd159db13 100755 (executable)
--- a/code_ruby/test/maasha/align/test_match.rb
+++ b/code_ruby/test/maasha/align/test_match.rb
@@ -1,5 +1,5 @@
 #!/usr/bin/env ruby
-$:.unshift File.join(File.dirname(__FILE__),'..','lib')
+$:.unshift File.join(File.dirname(__FILE__), '..', '..', '..')
 
 # Copyright (C) 2013 Martin A. Hansen.
 
@@ -26,48 +26,48 @@ $:.unshift File.join(File.dirname(__FILE__),'..','lib')
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 require 'test/unit'
+require 'test/helper'
 require 'maasha/align/match'
-require 'pp'
 
 class MatchTest < Test::Unit::TestCase
   def setup
     @match = Match.new(1, 1, 3)
   end
 
-  def test_Match_q_end_returns_correctly
+  test "#q_end returns correctly" do
     assert_equal(3, @match.q_end)
   end
 
-  def test_Match_s_end_returns_correctly
+  test "#s_end returns correctly" do
     assert_equal(3, @match.s_end)
   end
 
-  def test_Match_to_s_returns_correctly
+  test "#to_s returns correctly" do
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0",     @match.to_s)
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0 tcg", @match.to_s("atcg"))
   end
 
-  def test_Match_expand_to_left_end_returns_correctly
+  test "#expand to left end returns correctly" do
     assert_equal("q: 0 3 s: 0 3 l: 4 s: 0.0", @match.expand("atcg", "atcg", 0, 0, 3, 3).to_s)
   end
 
-  def test_Match_expand_to_left_mismatch_returns_correctly
+  test "#expand to left mismatch returns correctly" do
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0", @match.expand("gtcg", "atcg", 0, 0, 3, 3).to_s)
   end
 
-  def test_Match_expand_to_left_space_beg_returns_correctly
+  test "#expand to left space beg returns correctly" do
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0", @match.expand("atcg", "atcg", 1, 1, 3, 3).to_s)
   end
 
-  def test_Match_expand_to_right_end_returns_correctly
+  test "#expand to right end returns correctly" do
     assert_equal("q: 0 4 s: 0 4 l: 5 s: 0.0", @match.expand("atcga", "atcga", 0, 0, 4, 4).to_s)
   end
 
-  def test_Match_expand_to_right_mismatch_returns_correctly
+  test "#expand to right mismatch returns correctly" do
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0", @match.expand("gtcga", "atcgg", 0, 0, 4, 4).to_s)
   end
 
-  def test_Match_expand_to_right_space_end_returns_correctly
+  test "#expand to right space end returns correctly" do
     assert_equal("q: 1 3 s: 1 3 l: 3 s: 0.0", @match.expand("atcga", "atcga", 1, 1, 3, 3).to_s)
   end
 end