]> git.donarmstrong.com Git - biopieces.git/blobdiff - bp_test/in/assemble_pairs.in
rewrite of FASTQ internals
[biopieces.git] / bp_test / in / assemble_pairs.in
index 82a4fbb916689885a8dcc0b82f6d60fb72b2f049..75e2a5c124333371fe2a939bd9dcf80ea6ada778 100644 (file)
@@ -1,50 +1,50 @@
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 1:N:0:14
 SEQ: TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTGAGGGTTGTAAAGCACTTTCAATTGTGAAGAAAAGTTAACGGTTAATAACCGTTAGCCTTGACGTTAACTTTAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTCAGTCAGATGTG
 SEQ_LEN: 249
-SCORES: [^^^^^^accccccccfffffffgghhhdghggeffgeggfgeggcgdgdgge`eefeegeggeegggdeddggggggggggggeeegeggggggggggggfacdffffffffffffffffdfdfffffbdffffdbbdbdddbfff[`cfbfffdffdfffffdfbdW]Q]cb[dddffb^[cfbbbdbYb^bbdffffbbH^dfddY^bWSMFWOIYbW^b]^^QbdQQMSWbY^Ibb^YbIY^b^b
+SCORES: !??????BDDDDDDDDGGGGGGGHHIIIEHIHHFGGHFHHGHFHHDHEHEHHFAFFGFFHFHHFFHHHEFEEHHHHHHHHHHHHFFFHFHHHHHHHHHHHHGBDEGGGGGGGGGGGGGGGGEGEGGGGGCEGGGGECCECEEECGGG!ADGCGGGEGGEGGGGGEGCE8!2!DC!EEEGGC?!DGCCCEC:C?CCEGGGGCC)?EGEE:?C84.'80*:C8?C!??2CE22.48C:?*CC?:C*:?C?C
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 2:N:0:14
 SEQ: CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGTATTGGTCCAGAAAGCTGCCTTCGCCATTGATGTTCCTTCTGATATCTACGCATTTCACCGCTACACCAGAAATTCCACTTTCCTCTACCATACTCTAGTTGACCAGTTTCAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTGACTTAATAAACCGCCTACGCACGCTTTACGCCCAGTAATTC
 SEQ_LEN: 229
-SCORES: ^^^^^aa[L[accccceddeeegeeghZeZdfggcgdeX^dbcb^eeeeeffefghg^fecdd]dggeebfegghhhhhgggghgcgeggggccfffgggggggggeee_eec]aeceaea^\ccd\cdcddcacdadbed`\bad``beb`KK\\bd\\KK\HIP^`YYY^WcWFSZ``YYb`bddd^`^``bddddbIFSWHMOHF`Zc^`HHIPOWMM^IPIPYYY
+SCORES: ?????BB!-!BDDDDDFEEFFFHFFHI;F;EGHHDHEF9?ECDC?FFFFFGGFGHIH?GFDEE!EHHFFCGFHHIIIIIHHHHIHDHFHHHHDDGGGHHHHHHHHHFFF@FFD!BFDFBFB?=DDE=DEDEEDBDEBECFEA=CBEAACFCA,,==CE==,,=)*1?A:::?8D8'4;AA::CACEEE?A?AACEEEEC*'48).0)'A;D?A))*108..?*1*1:::
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 1:N:0:14
 SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAACGTTGGTGGTGAAATCCCAGAGCTTAACGCTGGAACTG
 SEQ_LEN: 251
-SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddeedddcdb`dd^Y`c``]`ddec`^bddeY^b`Wdddd`dddY``bdeedbdddd^Y^b`HMOY`dWWHMOYYbdddddb^`IY``YIHMM^]`ddeY
+SCORES: !???9?BBBDBDDBDDFFFFFFHHHIFHFHHIHHFHHHHEDDEGHHHCEHE?EFHFGHFHFHIHIIIHCECEHHHIFHIIIHGHFHHHHHHEEFFFFFEEFFFEFFFEEEEEFFFFFFFCEFBEEDEFFFFFFEFEFFEEFFFFDDDDA?EEEFFEEEDECAEE?:ADAA!AEEFDA?CEEF:?CA8EEEEAEEE:AACEFFECEEEE?:?CA).0:AE88).0::CEEEEEC?A*:AA:*)..?!AEEF:
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 2:N:0:14
 SEQ: TCTTCGCTACCCATGCTTTCGTTCCTCAGCGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTT
 SEQ_LEN: 247
-SCORES: [^^aa^cc`acacceeeeeegeghgegghhgdgdge^d^Obcefeegghgeeegggfc_d_dcaeg]Tdfggghhhffbfgggeghgg`eabffffggeeegeeegegee^ccacegM^eeeeeaeeedcdddedee\acddddbbdd`\`a\^bdb\`bK[T\adYbdI^I^d^I^YIYIPYW^`^`ddedd]dYIPYW`ddd^H^W^Y^Ybd`d``dIWP^I^bddYW^^IIPHTMHMW`IY`Y^
+SCORES: !??BB?DDABDBDDFFFFFFHFHIHFHHIIHEHEHF?E?0CDFGFFHHIHFFFHHHGD@E@EDBFH!5EGHHHIIIGGCGHHHFHIHHAFBCGGGGHHFFFHFFFHFHFF?DDBDFH.?FFFFFBFFFEDEEEFEFF=BDEEEECCEEA=AB=?CEC=AC,!5=BE:CE*?*?E?*?:*:*1:8?A?AEEFEE!E:*1:8AEEE?)?8?:?:CEAEAAE*81?*?CEE:8??**1)5.).8A*:A:?
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 1:N:0:14
 SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACT
 SEQ_LEN: 250
-SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbdddded`Z`dbdddbdZO^]OY``c``dbdeedddbd``bdYb`YI^bW^bdYYbdW`bb`YS^Y`bYWWWWHYIY^d`IYYWIIPIIPP^^Yd^b`Y^
+SCORES: ?????BBBBBDDBDDBFFFFFFECHFHFHFHGHHFGD?!CFHHHHHH!DEEFFFFDFFHF@FHHHIFHEEHHHIIHHHIHIHHHDEHHHHFEEFFF?FEEEEFEEFFEE:!CEEFEFFFBEEEEEDEFE::AE:?AECEFEF?A!;D88;CEEEEFEA;AECEEECE;0?!0:AADAAECEFFEEECEAACE:CA:*?C8?CE::CE8ACCA:4?:AC:8888):*:?EA*::8**1**11??:E?CA:?
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 2:N:0:14
 SEQ: CTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
 SEQ_LEN: 247
-SCORES: [^^a^aa^aaaaaee^eeegZegeegafObX`egb^e\^bb^ee\b^daeffgcgggeccdcc_d]beggghggg^^`dfegb^edeeeabdfggeggefgggeggebcM_ccegg^eeee\b^aeeecee^aec\ZccddcddddddZbbadddda^a^^a^b^aZd^da`YNY`b^`YI^d`b``I^bdbZINOIY^`bb``^b^ddddddY`YIWOOY``Y`ddYHOS^^Y`ZW`^b`NOIYY`
+SCORES: !??B?BB?BBBBBFF?FFFH;FHFFHBG0C9AFHC?F=?CC?FF=C?EBFGGHDHHHFDDEDD@E!CFHHHIHHH??AEGFHC?FEFFFBCEGHHFHHFGHHHFHHFCD.@DDFHH?FFFF=C?BFFFDFF?BFD=;DDEEDEEEEEE;CCBEEEEB?B??B?C?B;E?EBA:/:AC?A:*?EACAA*?CEC;*/0*:?ACCAA?C?EEEEEE:A:*800:AA:AEE:)04??:A;8A?CA/0*::A
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 1:N:0:14
 SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAACTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACT
 SEQ_LEN: 249
-SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`b`dd^d`IWYbddFHOW`dbd^ddd^Y^^YY`bdI^I^IY`NYIWW`^`^bb`dY^bIIS`NY`dbYYINON^YY^IIOMHIYWYNNNYYINY^Y^
+SCORES: !???B-!-?!BBBBBFFF;!CEEECC;EFFH=EGBE=CEFHD@CDCE!+!5C=FBAEADHFEHHHHHHECCG=CD=CCF=DC=DDACEE5:DEEEECBECEC3?3;?B:@CEEECEEC?CC????E?CAAAE?ACEEEEEEEE????A;)::ACAEE?EA*8:CEE')08AECE?EEE?:??::ACE*?*?*:A/:*88A?A?CCAE:?C**4A/:AEC::*/0/?::?**0.)*:8:///::*/:?:?
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 2:N:0:14
 SEQ: CCTCTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGTTGCCTTCGCTTTTGATGTTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCCACTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAAGGTTGAGCCTTGGGATTTCACCATCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
 SEQ_LEN: 250
-SCORES: ^^^^^aa^^aacaaaaaeeeeegeghheeacO`OXbfeff^Obccfgcfeggfdefgghhgd_beggJ`dfgeghhggbdegggfcggghhgghgaffggcfeggggaafeeccecegebeeg^MbbeeggggeeeeeeccaedccddddedMSK^a`\\`\\IT\`KaaK`\b``bddeddeI`ddbOI`dddbZbPOIIOWO^^HWWF`bdb``YYYYIW^bY^deYY^`HQ`YIHFMWS```O^dd`
+SCORES: ?????BB??BBDBBBBBFFFFFHFHIIFFBD0A09CGFGG?0CDDGHDGFHHGEFGHHIIHE@CFHH+AEGHFHIIHHCEFHHHGDHHHIIHHIHBGGHHDGFHHHHBBGFFDDFDFHFCFFH?.CCFFHHHHFFFFFFDDBFEDDEEEEFE.4,?BA==A==*5=A,BB,A=CAACEEFEEF*AEEC0*AEEEC;C10**080??)88'ACECAA::::*8?C:?EF::?A)2A:*)'.84AAA0?EEA
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 1:N:0:14
 SEQ: GGGAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGGGATCGAAGAAGCTCTGCGGAGTGTAAAGATCTGTCATAAGGGAAGAATAACGAGTATTCTAACAAAATATTCGTCTGACGGTACCTTATAAGAAAGCCACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGGTCGTATGAGGACTGATCAG
 SEQ_LEN: 239
-SCORES: ^^^^^a^aa[LT_abXbeea]Jb]b]d^_a\]K]T]edK]VV]bdH[[Ybc\_cdegccabeeddWY\_Kac\KRZadddd^Zabbdbbbd^aZ^aRY``WW^YIIYb```WWYYYYY^^WIH`bHMW^HIY^^^YO^bd``dWIISZWZ``Y^^YWY^^W^ddY`b^ZSQMHS^IYYWHMFFFMMFMWbW`HW``dY`Z^FOY^b`dd^WFFS`W^IWFOHFFWIOINYbWYbdb^YY
+SCORES: ?????B?BB!-5@BC9CFFB!+C!C!E?@B=!,!5!FE,!77!CE)!!:CD=@DEFHDDBCFFEE8:=@,BD=,3;BEEEE?;BCCECCCE?B;?B3:AA88?:**:CAAA88:::::??8*)AC).8?)*:???:0?CEAAE8**4;8;AA:??:8:??8?EE:AC?;42.)4?*::8).'''..'.8C8A)8AAE:A;?'0:?CAEE?8''4A8?*8'0)''8*0*/:C8:CEC?::
 ---
 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 2:N:0:14
 SEQ: GTTTGCTCCCCACGCTTTCGTTCCTCAGCGTCAGTATAGGCCCAGTAAGCTGCCTTCGCCTTTGATGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTACCTCACTCAAGACTGACAGTATTGAAACCGTTCCCCCGGTTAAGCCGCGGTCTTTTAATTCCAACTGATCAGT
 SEQ_LEN: 195
-SCORES: [[[]]LTL_____bdddddd``bdN`]bLV_VbdXXX`MX`dddJb\beec_ac_\dJXbT]d`bb\`Tb`_dc]bdccdddccccdXccddcccccbbdcd_cXXcccXXZXXPcIR_XIQIO_ZWWIOIIX____ZIWVIZ_WZGNZUXFLNNNUGWFQLSUZUGUFFFMGFNUGGNNMMUUUUGUU[[Z[d[
+SCORES: !!!!!-5-@@@@@CEEEEEEAACE/A!C-7@7CE999A.9AEEE+C=CFFD@BD@=E+9C5!EACC=A5CA@ED!CEDDEEEDDDDE9DDEEDDDDDCCEDE@D99DDD99;991D*3@9*2*0@;88*0**9@@@@;*87*;@8;(/;69'-///6(8'2-46;6(6'''.('/6((//..6666(66!!;!E!
 ---