polish of fastq2014-03-18T16:21:16Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-03-18T16:21:16Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=eb99c8692714ae906908545a7ff8f59f0d9575e9
polish of fastq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2293 74ccb610-7750-0410-82ae-013aeee3265d
fixed typo in max_vals2014-02-06T10:33:20Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-02-06T10:33:20Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=da9fc300ec207fce5d21e883781dab839b378fc7
fixed typo in max_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2290 74ccb610-7750-0410-82ae-013aeee3265d
refactor subseq to Seq#[]2014-01-13T10:38:40Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-01-13T10:38:40Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=10e0db1d8cc294afc9bcff4c56ca34770e0052cb
refactor subseq to Seq#[]
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2287 74ccb610-7750-0410-82ae-013aeee3265d
removed subseq and subseq! methods in favor of []2014-01-13T10:04:41Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-01-13T10:04:41Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=3656f15bb59e2eb7eff628bae117db6479b2f03f
removed subseq and subseq! methods in favor of []
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2286 74ccb610-7750-0410-82ae-013aeee3265d
exchanged subseq with seq[]2014-01-13T09:39:43Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-01-13T09:39:43Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=29d03f83dfadfdb5f856cac227c5fbf0b3180761
exchanged subseq with seq[]
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2285 74ccb610-7750-0410-82ae-013aeee3265d
exchanged subseq with seq[]2014-01-13T09:29:50Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-01-13T09:29:50Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=a5a08a965a1b964808eaa51743c7a2629cb46adb
exchanged subseq with seq[]
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2284 74ccb610-7750-0410-82ae-013aeee3265d
refactor foo to record2014-01-13T09:21:41Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2014-01-13T09:21:41Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=d5d102b297c4a1d231a2f04faf165dec0164b046
refactor foo to record
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2283 74ccb610-7750-0410-82ae-013aeee3265d
fixed missing field problem in analyze_vals2013-12-19T12:35:36Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-19T12:35:36Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=bfab657c8174eb352504848abb4395bb3c065f7f
fixed missing field problem in analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2282 74ccb610-7750-0410-82ae-013aeee3265d
updateing to idba hybrid2013-12-18T17:16:12Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-18T17:16:12Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=6c1d90a31caa1fe54bedc965ba26940688a31ab0
updateing to idba hybrid
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2279 74ccb610-7750-0410-82ae-013aeee3265d
changed fasta parse to allow leading empty lines2013-12-13T10:37:23Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-13T10:37:23Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=164c771704dbc986614e93aed25a6d1fc0e200c7
changed fasta parse to allow leading empty lines
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2278 74ccb610-7750-0410-82ae-013aeee3265d
fixed wrap bug in seq.rb2013-12-11T11:14:16Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-11T11:14:16Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=eb15b4040e0ceba1c3df40b7f0a597c469771cee
fixed wrap bug in seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2277 74ccb610-7750-0410-82ae-013aeee3265d
fixed qual scores in sam.rb2013-12-05T14:16:58Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-05T14:16:58Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=5479490038e34904c92cdd92b1c47034b7452e53
fixed qual scores in sam.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2275 74ccb610-7750-0410-82ae-013aeee3265d
fixed qual scores in sam.rb2013-12-05T14:07:59Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-05T14:07:59Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=27a34d675d07468851f2076a62ca2b8dbefb5923
fixed qual scores in sam.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2274 74ccb610-7750-0410-82ae-013aeee3265d
fixed encoding bug in bowtie_seq2013-12-05T13:45:19Zmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265dmartinahansenmartinahansen@74ccb610-7750-0410-82ae-013aeee3265d2013-12-05T13:45:19Zhttps://git.donarmstrong.com/?p=biopieces.git;a=commitdiff;h=72bdee400078921c708370e9b9e101df4c5ebbe1
fixed encoding bug in bowtie_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2273 74ccb610-7750-0410-82ae-013aeee3265d