]> git.donarmstrong.com Git - mothur.git/commit
rewrote metastats command in c++, added mothurRemove function to handle ~ error....
authorwestcott <westcott>
Fri, 15 Jul 2011 19:50:30 +0000 (19:50 +0000)
committerwestcott <westcott>
Fri, 15 Jul 2011 19:50:30 +0000 (19:50 +0000)
commit19fcbbdba99658f5eca244803280f9ee7f9f6607
treee9f50cad7346f3bf30db7768359b3e1be1e85391
parent65b6a38d00b3a72021611211e7c25392022c69ed
rewrote metastats command in c++, added mothurRemove function to handle ~ error. fixed bug with classify.otu summary file. added check for isnum in quality scores read.
123 files changed:
Mothur.xcodeproj/project.pbxproj
aligncommand.cpp
bayesian.cpp
bellerophon.cpp
binsequencecommand.cpp
blastalign.cpp
blastdb.cpp
bootstrapsharedcommand.cpp
catchallcommand.cpp
chimerabellerophoncommand.cpp
chimeraccodecommand.cpp
chimeracheckcommand.cpp
chimerapintailcommand.cpp
chimeraslayercommand.cpp
chimerauchimecommand.cpp
chopseqscommand.cpp
classifyotucommand.cpp
classifyotucommand.h
classifyseqscommand.cpp
clustercommand.cpp
clusterdoturcommand.cpp
clusterfragmentscommand.cpp
clustersplitcommand.cpp
collectcommand.cpp
collectsharedcommand.cpp
consensusseqscommand.cpp
countseqscommand.cpp
deconvolutecommand.cpp
degapseqscommand.cpp
deuniqueseqscommand.cpp
deuniquetreecommand.cpp
distancecommand.cpp
fileoutput.cpp
filterseqscommand.cpp
fisher2.c
formatcolumn.cpp
formatphylip.cpp
getcommandinfocommand.cpp
getgroupcommand.cpp
getgroupscommand.cpp
getlineagecommand.cpp
getlistcountcommand.cpp
getoturepcommand.cpp
getotuscommand.cpp
getrabundcommand.cpp
getrelabundcommand.cpp
getsabundcommand.cpp
getseqscommand.cpp
getsharedotucommand.cpp
hcluster.cpp
hclustercommand.cpp
heatmapcommand.cpp
heatmapsimcommand.cpp
indicatorcommand.cpp
libshuffcommand.cpp
listseqscommand.cpp
makefastqcommand.cpp
makegroupcommand.cpp
matrixoutputcommand.cpp
mergefilecommand.cpp
mergegroupscommand.cpp
metastats2.c
metastatscommand.cpp
mgclustercommand.cpp
mothur.cpp
mothurfisher.cpp [new file with mode: 0644]
mothurfisher.h [new file with mode: 0644]
mothurmetastats.cpp [new file with mode: 0644]
mothurmetastats.h [new file with mode: 0644]
mothurout.cpp
mothurout.h
nmdscommand.cpp
normalizesharedcommand.cpp
otuhierarchycommand.cpp
pairwiseseqscommand.cpp
parsefastaqcommand.cpp
parselistscommand.cpp
parsimony.cpp
parsimonycommand.cpp
pcacommand.cpp
pcoacommand.cpp
phylodiversitycommand.cpp
phylosummary.cpp
phylotypecommand.cpp
pintail.cpp
preclustercommand.cpp
qualityscores.cpp
rarefact.cpp
rarefactcommand.cpp
rarefactsharedcommand.cpp
readblast.cpp
readcluster.cpp
readdistcommand.cpp
removegroupscommand.cpp
removelineagecommand.cpp
removeotuscommand.cpp
removerarecommand.cpp
removeseqscommand.cpp
reversecommand.cpp
screenseqscommand.cpp
secondarystructurecommand.cpp
seqerrorcommand.cpp
seqsummarycommand.cpp
setdircommand.cpp
sffinfocommand.cpp
sharedcommand.cpp
shhhercommand.cpp
splitabundcommand.cpp
splitgroupscommand.cpp
splitmatrix.cpp
subsamplecommand.cpp
summarycommand.cpp
summarysharedcommand.cpp
systemcommand.cpp
taxonomyequalizer.cpp
treegroupscommand.cpp
trimflowscommand.cpp
trimseqscommand.cpp
unifracunweightedcommand.cpp
unifracweightedcommand.cpp
unweighted.cpp
venncommand.cpp
weighted.cpp