rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index 8c7b9b69525abe705d432069043b4288c9830e23..2fbf6d1ca616033f4fd52993412f0e720f8187af 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -297,7 +297,7 @@ int SeqSummaryCommand::execute(){
                                        //append files
                                        for(int i=1;i<processors;i++){
                                                m->appendFiles((summaryFile + toString(processIDS[i]) + ".temp"), summaryFile);
-                                               remove((summaryFile + toString(processIDS[i]) + ".temp").c_str());
+                                               m->mothurRemove((summaryFile + toString(processIDS[i]) + ".temp"));
                                        }
                                }
                                
@@ -330,7 +330,7 @@ int SeqSummaryCommand::execute(){
                if (startPosition[0] == -1) {  startPosition[0] = 0;    }
                if (endPosition[0] == -1)       {  endPosition[0] = 0;          }
                
-               if (m->control_pressed) {  remove(summaryFile.c_str()); return 0; }
+               if (m->control_pressed) {  m->mothurRemove(summaryFile); return 0; }
                
                m->mothurOutEndLine();
                m->mothurOut("\t\tStart\tEnd\tNBases\tAmbigs\tPolymer"); m->mothurOutEndLine();
@@ -344,7 +344,7 @@ int SeqSummaryCommand::execute(){
                if (namefile == "") {  m->mothurOut("# of Seqs:\t" + toString(numSeqs)); m->mothurOutEndLine(); }
                else { m->mothurOut("# of unique seqs:\t" + toString(numSeqs)); m->mothurOutEndLine(); m->mothurOut("total # of seqs:\t" + toString(startPosition.size())); m->mothurOutEndLine(); }
                
-               if (m->control_pressed) {  remove(summaryFile.c_str()); return 0; }
+               if (m->control_pressed) {  m->mothurRemove(summaryFile); return 0; }
                
                m->mothurOutEndLine();
                m->mothurOut("Output File Name: "); m->mothurOutEndLine();
@@ -567,7 +567,7 @@ int SeqSummaryCommand::createProcessesCreateSummary(vector<int>& startPosition,
                        for (int k = 0; k < tempNum; k++)                       {               in >> temp; longHomoPolymer.push_back(temp);    }               m->gobble(in);
                                
                        in.close();
-                       remove(tempFilename.c_str());
+                       m->mothurRemove(tempFilename);
                }
                
                return num;