rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / collectsharedcommand.cpp

diff --git a/collectsharedcommand.cpp b/collectsharedcommand.cpp
index 202883e201561f8851d77c5e6569df33280143c3..3b43a40f4cd33c4f006776ba764c04fa3866d96b 100644 (file)
--- a/collectsharedcommand.cpp
+++ b/collectsharedcommand.cpp
@@ -445,7 +445,7 @@ int CollectSharedCommand::execute(){
 
                while((order != NULL) && ((allLines == 1) || (userLabels.size() != 0))) {
                        if (m->control_pressed) { 
-                                       for (int i = 0; i < outputNames.size(); i++) {  remove(outputNames[i].c_str());         }  outputTypes.clear();
+                                       for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);        }  outputTypes.clear();
                                        for(int i=0;i<cDisplays.size();i++){    delete cDisplays[i];    }
                                        delete order; delete input;
                                        m->Groups.clear();
@@ -493,7 +493,7 @@ int CollectSharedCommand::execute(){
                }
                
                if (m->control_pressed) { 
-                                       for (int i = 0; i < outputNames.size(); i++) {  remove(outputNames[i].c_str());         }   outputTypes.clear();
+                                       for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);        }   outputTypes.clear();
                                        for(int i=0;i<cDisplays.size();i++){    delete cDisplays[i];    }
                                        m->Groups.clear();
                                        delete input;
@@ -524,7 +524,7 @@ int CollectSharedCommand::execute(){
                        delete cCurve;
                        
                        if (m->control_pressed) { 
-                               for (int i = 0; i < outputNames.size(); i++) {  remove(outputNames[i].c_str());         }  outputTypes.clear();
+                               for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]);        }  outputTypes.clear();
                                for(int i=0;i<cDisplays.size();i++){    delete cDisplays[i];    }
                                delete order; 
                                delete input;