rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / subsamplecommand.cpp

diff --git a/subsamplecommand.cpp b/subsamplecommand.cpp
index 95a0442d6c970bd74a383c1e13765af305eeac57..d5388896793adbd55c925480ec708e460cb14b71 100644 (file)
--- a/subsamplecommand.cpp
+++ b/subsamplecommand.cpp
@@ -270,19 +270,19 @@ int SubSampleCommand::execute(){
                if (abort == true) { if (calledHelp) { return 0; }  return 2;   }
                
                if (sharedfile != "")   {   getSubSampleShared();       }
-               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       remove(outputNames[i].c_str()); return 0; } }
+               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       m->mothurRemove(outputNames[i]); return 0; } }
                
                if (listfile != "")             {   getSubSampleList();         }
-               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       remove(outputNames[i].c_str()); return 0; } }
+               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       m->mothurRemove(outputNames[i]); return 0; } }
                
                if (rabundfile != "")   {   getSubSampleRabund();       }
-               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       remove(outputNames[i].c_str()); return 0; } }
+               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       m->mothurRemove(outputNames[i]); return 0; } }
                
                if (sabundfile != "")   {   getSubSampleSabund();       }
-               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       remove(outputNames[i].c_str()); return 0; } }
+               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       m->mothurRemove(outputNames[i]); return 0; } }
                
                if (fastafile != "")    {   getSubSampleFasta();        }
-               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       remove(outputNames[i].c_str()); return 0; } }
+               if (m->control_pressed) {  for (int i = 0; i < outputNames.size(); i++) {       m->mothurRemove(outputNames[i]); return 0; } }
                        
                //set fasta file as new current fastafile
                string current = "";