rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / shhhercommand.cpp

diff --git a/shhhercommand.cpp b/shhhercommand.cpp
index a6fee2a3201bde30698cb145d9d92729c2cbdd74..5017f88bdfef592fd3996302ac0fbe9058088a49 100644 (file)
--- a/shhhercommand.cpp
+++ b/shhhercommand.cpp
@@ -373,7 +373,7 @@ int ShhherCommand::execute(){
                                        MPI_Recv(&done, 1, MPI_INT, i, tag, MPI_COMM_WORLD, &status);
                                        
                                        m->appendFiles((distFileName + ".temp." + toString(i)), distFileName);
-                                       remove((distFileName + ".temp." + toString(i)).c_str());
+                                       m->mothurRemove((distFileName + ".temp." + toString(i)));
                                }
 
                                string namesFileName = createNamesFile();
@@ -383,9 +383,9 @@ int ShhherCommand::execute(){
 
                                getOTUData(listFileName);
 
-                               remove(distFileName.c_str());
-                               remove(namesFileName.c_str());
-                               remove(listFileName.c_str());
+                               m->mothurRemove(distFileName);
+                               m->mothurRemove(namesFileName);
+                               m->mothurRemove(listFileName);
                                
                                initPyroCluster();
 
@@ -759,9 +759,9 @@ int ShhherCommand::execute(){
                        string listFileName = cluster(distFileName, namesFileName);
                        getOTUData(listFileName);
                        
-                       remove(distFileName.c_str());
-                       remove(namesFileName.c_str());
-                       remove(listFileName.c_str());
+                       m->mothurRemove(distFileName);
+                       m->mothurRemove(namesFileName);
+                       m->mothurRemove(listFileName);
                        
                        initPyroCluster();
                        
@@ -1167,7 +1167,7 @@ string ShhherCommand::createDistFile(int processors){
                        //append and remove temp files
                        for (int i=0;i<processIDs.size();i++) { 
                                m->appendFiles((fDistFileName + toString(processIDs[i]) + ".temp"), fDistFileName);
-                               remove((fDistFileName + toString(processIDs[i]) + ".temp").c_str());
+                               m->mothurRemove((fDistFileName + toString(processIDs[i]) + ".temp"));
                        }
                        
                }