rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / splitgroupscommand.cpp

diff --git a/splitgroupscommand.cpp b/splitgroupscommand.cpp
index 6dd6206084fbe7ea81b9ad254ac2aedf28031407..00d9a9dc17b710467559bf598c988426ef5f3099 100644 (file)
--- a/splitgroupscommand.cpp
+++ b/splitgroupscommand.cpp
@@ -174,7 +174,7 @@ int SplitGroupCommand::execute(){
                
                delete groupMap;
                
-               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        remove(outputNames[i].c_str()); } return 0; }
+               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        m->mothurRemove(outputNames[i]);        } return 0; }
                
                string current = "";
                itTypes = outputTypes.find("fasta");
@@ -328,7 +328,7 @@ int SplitGroupCommand::splitFasta() {
                //remove blank files
                for (int i = 0; i < outputNames.size(); i++) {
                        if (m->isBlank(outputNames[i])) {
-                               remove(outputNames[i].c_str());
+                               m->mothurRemove(outputNames[i]);
                        }else { newOutputNames.push_back(outputNames[i]); }
                }
                outputNames = newOutputNames;