rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / makegroupcommand.cpp

diff --git a/makegroupcommand.cpp b/makegroupcommand.cpp
index 2cab212cf94a0a9908b764facdd55669ff222cc9..e32af2152e1bd3d420a0a94dac738a97c19c24af 100644 (file)
--- a/makegroupcommand.cpp
+++ b/makegroupcommand.cpp
@@ -205,7 +205,7 @@ int MakeGroupCommand::execute(){
                
                for (int i = 0; i < fastaFileNames.size(); i++) {
                
-                       if (m->control_pressed) { outputTypes.clear(); out.close(); remove(filename.c_str()); return 0; }
+                       if (m->control_pressed) { outputTypes.clear(); out.close(); m->mothurRemove(filename); return 0; }
                        
                        ifstream in;
                        m->openInputFile(fastaFileNames[i], in);
@@ -214,7 +214,7 @@ int MakeGroupCommand::execute(){
                                
                                Sequence seq(in, "no align"); m->gobble(in);
                                
-                               if (m->control_pressed) { outputTypes.clear();  in.close(); out.close(); remove(filename.c_str()); return 0; }
+                               if (m->control_pressed) { outputTypes.clear();  in.close(); out.close(); m->mothurRemove(filename); return 0; }
                                
                                if (seq.getName() != "") {      out << seq.getName() << '\t' << groupsNames[i] << endl;         }
                        }