rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / reversecommand.cpp

diff --git a/reversecommand.cpp b/reversecommand.cpp
index ea2ddeb8e718b44363409f0b332827feec41d6a9..c664ad7548b52f8966c799749f382d31169f564d 100644 (file)
--- a/reversecommand.cpp
+++ b/reversecommand.cpp
@@ -166,7 +166,7 @@ int ReverseSeqsCommand::execute(){
                        m->openOutputFile(fastaReverseFileName, outFASTA);
                        
                        while(!inFASTA.eof()){
-                               if (m->control_pressed) {  inFASTA.close();  outFASTA.close(); remove(fastaReverseFileName.c_str()); return 0; }
+                               if (m->control_pressed) {  inFASTA.close();  outFASTA.close(); m->mothurRemove(fastaReverseFileName); return 0; }
                                 
                                Sequence currSeq(inFASTA);  m->gobble(inFASTA);
                                if (currSeq.getName() != "") {
@@ -194,7 +194,7 @@ int ReverseSeqsCommand::execute(){
                        m->openOutputFile(qualReverseFileName, outQual);
 
                        while(!inQual.eof()){
-                               if (m->control_pressed) {  inQual.close();  outQual.close(); remove(qualReverseFileName.c_str()); return 0; }
+                               if (m->control_pressed) {  inQual.close();  outQual.close(); m->mothurRemove(qualReverseFileName); return 0; }
                                currQual = QualityScores(inQual);  m->gobble(inQual);
                                currQual.flipQScores(); 
                                currQual.printQScores(outQual);
@@ -204,7 +204,7 @@ int ReverseSeqsCommand::execute(){
                        outputNames.push_back(qualReverseFileName); outputTypes["qfile"].push_back(qualReverseFileName);
                }
                
-               if (m->control_pressed) {  remove(qualReverseFileName.c_str()); remove(fastaReverseFileName.c_str()); return 0; }
+               if (m->control_pressed) {  m->mothurRemove(qualReverseFileName); m->mothurRemove(fastaReverseFileName); return 0; }
                
                //set fasta file as new current fastafile
                string current = "";