rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / filterseqscommand.cpp

diff --git a/filterseqscommand.cpp b/filterseqscommand.cpp
index 1204663a52c73a3a98af34c42c4a93ec044e7200..173227f372f4d4cbf7445e5f3fea440220e70b4a 100644 (file)
--- a/filterseqscommand.cpp
+++ b/filterseqscommand.cpp
@@ -298,7 +298,7 @@ int FilterSeqsCommand::execute() {
                        if(filter[i] == '1'){   filteredLength++;       }
                }
                
-               if (m->control_pressed) {  outputTypes.clear(); for(int i = 0; i < outputNames.size(); i++) { remove(outputNames[i].c_str()); }  return 0; }
+               if (m->control_pressed) {  outputTypes.clear(); for(int i = 0; i < outputNames.size(); i++) { m->mothurRemove(outputNames[i]); }  return 0; }
 
                
                m->mothurOutEndLine();
@@ -438,7 +438,7 @@ int FilterSeqsCommand::filterSequences() {
                                        //append fasta files
                                        for(int i=1;i<processors;i++){
                                                m->appendFiles((fastafileNames[s] + toString(processIDS[i]) + ".temp"), filteredFasta);
-                                               remove((fastafileNames[s] + toString(processIDS[i]) + ".temp").c_str());
+                                               m->mothurRemove((fastafileNames[s] + toString(processIDS[i]) + ".temp"));
                                        }
                                }
                                
@@ -637,7 +637,7 @@ int FilterSeqsCommand::createProcessesRunFilter(string F, string filename) {
                        string tempFile =  filename + toString(processIDS[i]) + ".num.temp";
                        m->openInputFile(tempFile, in);
                        if (!in.eof()) { int tempNum = 0; in >> tempNum; num += tempNum; }
-                       in.close(); remove(tempFile.c_str());
+                       in.close(); m->mothurRemove(tempFile);
                }
 
                
@@ -1024,7 +1024,7 @@ int FilterSeqsCommand::createProcessesCreateFilter(Filters& F, string filename)
                        for (int k = 0; k < alignmentLength; k++) {             in >> temp; F.gap[k] += temp; } m->gobble(in);
                                
                        in.close();
-                       remove(tempFilename.c_str());
+                       m->mothurRemove(tempFilename);
                }
                
                return num;