rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / indicatorcommand.cpp

diff --git a/indicatorcommand.cpp b/indicatorcommand.cpp
index e8863f75fbdf330b338a28bc5a19aa9f45ce5dc2..6fccaba1381a22a618686b6f0bbd4c447026ca3e 100644 (file)
--- a/indicatorcommand.cpp
+++ b/indicatorcommand.cpp
@@ -353,7 +353,7 @@ int IndicatorCommand::execute(){
                if (sharedfile != "") {  for (int i = 0; i < lookup.size(); i++) {  delete lookup[i];  } }
                else { for (int i = 0; i < lookupFloat.size(); i++) {  delete lookupFloat[i];  } }
                
-               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        remove(outputNames[i].c_str()); } return 0; }
+               if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        m->mothurRemove(outputNames[i]);        } return 0; }
                
                //set tree file as new current treefile
                if (treefile != "") {
@@ -1183,7 +1183,7 @@ vector<float> IndicatorCommand::getPValues(vector< vector<SharedRAbundFloatVecto
                                        in >> numTemp; m->gobble(in);
                                        pvalues[j] += numTemp;
                                }
-                               in.close(); remove(tempFile.c_str());
+                               in.close(); m->mothurRemove(tempFile);
                        }
                        for (int i = 0; i < pvalues.size(); i++) { pvalues[i] /= (double)iters; } 
                }
@@ -1296,7 +1296,7 @@ vector<float> IndicatorCommand::getPValues(vector< vector<SharedRAbundVector*> >
                                        in >> numTemp; m->gobble(in);
                                        pvalues[j] += numTemp;
                                }
-                               in.close(); remove(tempFile.c_str());
+                               in.close(); m->mothurRemove(tempFile);
                        }
                        for (int i = 0; i < pvalues.size(); i++) { pvalues[i] /= (double)iters; } 
                }