rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / setdircommand.cpp

diff --git a/setdircommand.cpp b/setdircommand.cpp
index ff1e2fe0709cf7e4d6549cc11a227ff9dc355e3f..0b3379cf230967f48e41c234e26c8c98b593c540 100644 (file)
--- a/setdircommand.cpp
+++ b/setdircommand.cpp
@@ -129,7 +129,7 @@ int SetDirectoryCommand::execute(){
                                m->mothurOut(output + " directory does not exist or is not writable."); m->mothurOutEndLine(); 
                        }else{
                                out.close();
-                               remove(outTemp.c_str());
+                               m->mothurRemove(outTemp);
                                m->mothurOut("outputDir=" + output); m->mothurOutEndLine();  
                                commandFactory->setOutputDirectory(output);
                        }
@@ -161,7 +161,7 @@ int SetDirectoryCommand::execute(){
                                m->mothurOut(input + " directory does not exist or is not writable."); m->mothurOutEndLine(); 
                        }else{
                                in.close();
-                               remove(inTemp.c_str());
+                               m->mothurRemove(inTemp);
                                m->mothurOut("inputDir=" + input); m->mothurOutEndLine();  
                                commandFactory->setInputDirectory(input); 
                        }