rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / libshuffcommand.cpp

diff --git a/libshuffcommand.cpp b/libshuffcommand.cpp
index c993a06282d4abec617318d87ec9ec18bb64c5e2..96abbbe995918d779e4cd9086e650b7aa63a8a7b 100644 (file)
--- a/libshuffcommand.cpp
+++ b/libshuffcommand.cpp
@@ -222,7 +222,7 @@ int LibShuffCommand::execute(){
                        m->openOutputFile(newGroupFile, outGroups);
                        
                        for (int i = 0; i < matrix->getNumSeqs(); i++) {
-                               if (m->control_pressed) { delete groupMap; delete matrix; outGroups.close(); remove(newGroupFile.c_str()); return 0; }
+                               if (m->control_pressed) { delete groupMap; delete matrix; outGroups.close(); m->mothurRemove(newGroupFile); return 0; }
                                
                                Names temp = matrix->getRowInfo(i);
                                outGroups << temp.seqName << '\t' << temp.groupName << endl;
@@ -238,7 +238,7 @@ int LibShuffCommand::execute(){
                        groupMap = new GroupMap(groupfile);
                        groupMap->readMap();
                        
-                       if (m->control_pressed) { delete groupMap; delete matrix; remove(newGroupFile.c_str()); return 0; }
+                       if (m->control_pressed) { delete groupMap; delete matrix; m->mothurRemove(newGroupFile); return 0; }
                }
                
                        
@@ -320,7 +320,7 @@ int LibShuffCommand::execute(){
                
                delete matrix; delete groupMap;
                
-               if (m->control_pressed) {  outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) {  remove(outputNames[i].c_str()); } return 0; }
+               if (m->control_pressed) {  outputTypes.clear(); for (int i = 0; i < outputNames.size(); i++) {  m->mothurRemove(outputNames[i]); } return 0; }
 
                m->mothurOutEndLine();
                m->mothurOut("Output File Names: "); m->mothurOutEndLine();