rewrote metastats command in c++, added mothurRemove function to handle ~ error....

[mothur.git] / parsefastaqcommand.cpp

diff --git a/parsefastaqcommand.cpp b/parsefastaqcommand.cpp
index 1033ba5d5dd3a64b001e2e8bc120b792df02e824..9cba70b9d2772edba281cd5f03459d1fdc32a966 100644 (file)
--- a/parsefastaqcommand.cpp
+++ b/parsefastaqcommand.cpp
@@ -169,7 +169,7 @@ int ParseFastaQCommand::execute(){
                outFasta.close();
                outQual.close();
                
-               if (m->control_pressed) { outputTypes.clear(); remove(fastaFile.c_str()); remove(qualFile.c_str()); return 0; }
+               if (m->control_pressed) { outputTypes.clear(); m->mothurRemove(fastaFile); m->mothurRemove(qualFile); return 0; }
                
                //set fasta file as new current fastafile
                string current = "";