update to build 135 schema

diff --git a/schema/human_9606_schema/dbSNP_sup_constraint.sql b/schema/human_9606_schema/dbSNP_sup_constraint.sql
index 3525ab57748a1bcb12e4526f7856f6f66bbbfdf5..10af6bd3da2b7df9f93b0815164857f238fe260f 100644 (file)
--- a/schema/human_9606_schema/dbSNP_sup_constraint.sql
+++ b/schema/human_9606_schema/dbSNP_sup_constraint.sql
@@ -1,130 +1,37 @@
-ALTER TABLE [SubSNPAcc_p1_human] ADD 
-       CONSTRAINT [pk_SubSNPAcc_p1_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [acc_type_ind],
-               [acc_part]
-       ),
-       CONSTRAINT [ck_SubSNPAcc_p1_human] CHECK ([subsnp_id] >= 1 and [subsnp_id] <= 10000000)
+ALTER TABLE [SubSNPAcc_p1_human] ADD CONSTRAINT [pk_SubSNPAcc_p1_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[acc_type_ind] ASC,[acc_part] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPAcc_p2_human] ADD 
-       CONSTRAINT [pk_SubSNPAcc_p2_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [acc_type_ind],
-               [acc_part]
-       ),
-       CONSTRAINT [ck_SubSNPAcc_p2_human] CHECK ([subsnp_id] >= 10000001 and [subsnp_id] <= 20000000)
+ALTER TABLE [SubSNPAcc_p2_human] ADD CONSTRAINT [pk_SubSNPAcc_p2_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[acc_type_ind] ASC,[acc_part] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPAcc_p3_human] ADD 
-       CONSTRAINT [pk_SubSNPAcc_p3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [acc_type_ind],
-               [acc_part]
-       ),
-       CONSTRAINT [ck_SubSNPAcc_p3] CHECK ([subsnp_id] >= 20000001 and [subsnp_id] <= 30000000)
+ALTER TABLE [SubSNPAcc_p3_human] ADD CONSTRAINT [pk_SubSNPAcc_p3]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[acc_type_ind] ASC,[acc_part] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPCommLine_p1_human] ADD 
-       CONSTRAINT [pk_SubSNPCommLine_p1_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPCommLine_p1_human] CHECK ([subsnp_id] >= 1 and [subsnp_id] <= 10000000)
+ALTER TABLE [SubSNPCommLine_p1_human] ADD CONSTRAINT [pk_SubSNPCommLine_p1_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPCommLine_p2_human] ADD 
-       CONSTRAINT [pk_SubSNPCommLine_p2_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPCommLine_p2_human] CHECK ([subsnp_id] >= 10000001 and [subsnp_id] <= 20000000)
+ALTER TABLE [SubSNPCommLine_p2_human] ADD CONSTRAINT [pk_SubSNPCommLine_p2_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPCommLine_p3_human] ADD 
-       CONSTRAINT [pk_SubSNPCommLine_p3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPCommLine_p3] CHECK ([subsnp_id] >= 20000001 and [subsnp_id] <= 30000000)
+ALTER TABLE [SubSNPCommLine_p3_human] ADD CONSTRAINT [pk_SubSNPCommLine_p3]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq3_p1_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq3_p1_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq3_p1_human] CHECK ([subsnp_id] >= 1 and [subsnp_id] <= 10000000)
+ALTER TABLE [SubSNPSeq3_p1_human] ADD CONSTRAINT [pk_SubSNPSeq3_p1_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq3_p2_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq3_p2_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq3_p2_human] CHECK ([subsnp_id] >= 10000001 and [subsnp_id] <= 20000000)
+ALTER TABLE [SubSNPSeq3_p2_human] ADD CONSTRAINT [pk_SubSNPSeq3_p2_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq3_p3_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq3_p3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq3_p3] CHECK ([subsnp_id] >= 20000001 and [subsnp_id] <= 30000000)
+ALTER TABLE [SubSNPSeq3_p3_human] ADD CONSTRAINT [pk_SubSNPSeq3_p3]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq5_p1_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq5_p1_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq5_p1_human] CHECK ([subsnp_id] >= 1 and [subsnp_id] <= 10000000)
+ALTER TABLE [SubSNPSeq5_p1_human] ADD CONSTRAINT [pk_SubSNPSeq5_p1_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq5_p2_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq5_p2_human] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq5_p2_human] CHECK ([subsnp_id] >= 10000001 and [subsnp_id] <= 20000000)
+ALTER TABLE [SubSNPSeq5_p2_human] ADD CONSTRAINT [pk_SubSNPSeq5_p2_human]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq5_p3_human] ADD 
-       CONSTRAINT [pk_SubSNPSeq5_p3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq5_p3] CHECK ([subsnp_id] >= 20000001 and [subsnp_id] <= 30000000)
+ALTER TABLE [SubSNPSeq5_p3_human] ADD CONSTRAINT [pk_SubSNPSeq5_p3]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 
 GO
 
 

-

diff --git a/schema/human_9606_schema/dbSNP_sup_constraint_postgresql.sql b/schema/human_9606_schema/dbSNP_sup_constraint_postgresql.sql
index 11b542495fc63aa4ef0846a72f51bd41e4d3e9d4..b2e235bb73ae9ed4b26876752de5c0464c60fe66 100644 (file)
--- a/schema/human_9606_schema/dbSNP_sup_constraint_postgresql.sql
+++ b/schema/human_9606_schema/dbSNP_sup_constraint_postgresql.sql
@@ -1,118 +1,12 @@
-ALTER TABLE SubSNPAcc_p1_human ADD 
-       CONSTRAINT pk_SubSNPAcc_p1_human PRIMARY KEY   
-       (
-               subsnp_id,
-               acc_type_ind,
-               acc_part
-       ),
-       ADD CONSTRAINT ck_SubSNPAcc_p1_human CHECK (subsnp_id >= 1 and subsnp_id <= 10000000)
-;
-
-ALTER TABLE SubSNPAcc_p2_human ADD 
-       CONSTRAINT pk_SubSNPAcc_p2_human PRIMARY KEY   
-       (
-               subsnp_id,
-               acc_type_ind,
-               acc_part
-       ), ADD
-       CONSTRAINT ck_SubSNPAcc_p2_human CHECK (subsnp_id >= 10000001 and subsnp_id <= 20000000)
-;
-
-ALTER TABLE SubSNPAcc_p3_human ADD 
-       CONSTRAINT pk_SubSNPAcc_p3 PRIMARY KEY   
-       (
-               subsnp_id,
-               acc_type_ind,
-               acc_part
-       ), ADD
-       CONSTRAINT ck_SubSNPAcc_p3 CHECK (subsnp_id >= 20000001 and subsnp_id <= 30000000)
-;
-
-ALTER TABLE SubSNPCommLine_p1_human ADD 
-       CONSTRAINT pk_SubSNPCommLine_p1_human PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPCommLine_p1_human CHECK (subsnp_id >= 1 and subsnp_id <= 10000000)
-;
-
-ALTER TABLE SubSNPCommLine_p2_human ADD 
-       CONSTRAINT pk_SubSNPCommLine_p2_human PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPCommLine_p2_human CHECK (subsnp_id >= 10000001 and subsnp_id <= 20000000)
-;
-
-ALTER TABLE SubSNPCommLine_p3_human ADD 
-       CONSTRAINT pk_SubSNPCommLine_p3 PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPCommLine_p3 CHECK (subsnp_id >= 20000001 and subsnp_id <= 30000000)
-;
-
-ALTER TABLE SubSNPSeq3_p1_human ADD 
-       CONSTRAINT pk_SubSNPSeq3_p1_human PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq3_p1_human CHECK (subsnp_id >= 1 and subsnp_id <= 10000000)
-;
-
-ALTER TABLE SubSNPSeq3_p2_human ADD 
-       CONSTRAINT pk_SubSNPSeq3_p2_human PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq3_p2_human CHECK (subsnp_id >= 10000001 and subsnp_id <= 20000000)
-;
-
-ALTER TABLE SubSNPSeq3_p3_human ADD 
-       CONSTRAINT pk_SubSNPSeq3_p3 PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq3_p3 CHECK (subsnp_id >= 20000001 and subsnp_id <= 30000000)
-;
-
-ALTER TABLE SubSNPSeq5_p1_human ADD 
-       CONSTRAINT pk_SubSNPSeq5_p1_human PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq5_p1_human CHECK (subsnp_id >= 1 and subsnp_id <= 10000000)
-;
-
-ALTER TABLE SubSNPSeq5_p2_human ADD 
-       CONSTRAINT pk_SubSNPSeq5_p2_human PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq5_p2_human CHECK (subsnp_id >= 10000001 and subsnp_id <= 20000000)
-;
-
-ALTER TABLE SubSNPSeq5_p3_human ADD 
-       CONSTRAINT pk_SubSNPSeq5_p3 PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq5_p3 CHECK (subsnp_id >= 20000001 and subsnp_id <= 30000000)
-;
-
-
+ALTER TABLE SubSNPAcc_p1_human ADD CONSTRAINT pk_SubSNPAcc_p1_human  PRIMARY KEY  (subsnp_id,acc_type_ind,acc_part);
+ALTER TABLE SubSNPAcc_p2_human ADD CONSTRAINT pk_SubSNPAcc_p2_human  PRIMARY KEY  (subsnp_id,acc_type_ind,acc_part);
+ALTER TABLE SubSNPAcc_p3_human ADD CONSTRAINT pk_SubSNPAcc_p3  PRIMARY KEY  (subsnp_id,acc_type_ind,acc_part);
+ALTER TABLE SubSNPCommLine_p1_human ADD CONSTRAINT pk_SubSNPCommLine_p1_human  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPCommLine_p2_human ADD CONSTRAINT pk_SubSNPCommLine_p2_human  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPCommLine_p3_human ADD CONSTRAINT pk_SubSNPCommLine_p3  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPSeq3_p1_human ADD CONSTRAINT pk_SubSNPSeq3_p1_human  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq3_p2_human ADD CONSTRAINT pk_SubSNPSeq3_p2_human  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq3_p3_human ADD CONSTRAINT pk_SubSNPSeq3_p3  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq5_p1_human ADD CONSTRAINT pk_SubSNPSeq5_p1_human  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq5_p2_human ADD CONSTRAINT pk_SubSNPSeq5_p2_human  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq5_p3_human ADD CONSTRAINT pk_SubSNPSeq5_p3  PRIMARY KEY  (subsnp_id,type,line_num);

diff --git a/schema/human_9606_schema/dbSNP_sup_index_postgresql.sql b/schema/human_9606_schema/dbSNP_sup_index_postgresql.sql
index 384ee9a88911ff72cc6e9514ee4ab9cb86d5ff94..8b137891791fe96927ad78e64b0aad7bded08bdc 100644 (file)
--- a/schema/human_9606_schema/dbSNP_sup_index_postgresql.sql
+++ b/schema/human_9606_schema/dbSNP_sup_index_postgresql.sql
@@ -1,13 +1 @@
 
 

-
-
-
-
-
-
-
-
-
-
-
-

diff --git a/schema/human_9606_schema/dbSNP_sup_table.sql b/schema/human_9606_schema/dbSNP_sup_table.sql
index 0e0915dc2b41d350ed219543ce92ee7975c215da..3e43612d8c2b1292f7bfab0033c80b2fb1a2b8ca 100644 (file)
--- a/schema/human_9606_schema/dbSNP_sup_table.sql
+++ b/schema/human_9606_schema/dbSNP_sup_table.sql
@@ -1,119 +1,119 @@
-CREATE TABLE [SubSNPAcc_p1_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [acc_type_ind] [char] (1) NOT NULL ,
-       [acc_part] [varchar] (16) NOT NULL ,
-       [acc_ver] [int] NULL 
-)
+CREATE TABLE [SubSNPAcc_p1_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[acc_type_ind] [char](1) NOT NULL ,
+[acc_part] [varchar](16) NOT NULL ,
+[acc_ver] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPAcc_p2_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [acc_type_ind] [char] (1) NOT NULL ,
-       [acc_part] [varchar] (16) NOT NULL ,
-       [acc_ver] [int] NULL 
-)
+CREATE TABLE [SubSNPAcc_p2_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[acc_type_ind] [char](1) NOT NULL ,
+[acc_part] [varchar](16) NOT NULL ,
+[acc_ver] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPAcc_p3_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [acc_type_ind] [char] (1) NOT NULL ,
-       [acc_part] [varchar] (16) NOT NULL ,
-       [acc_ver] [int] NULL 
-)
+CREATE TABLE [SubSNPAcc_p3_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[acc_type_ind] [char](1) NOT NULL ,
+[acc_part] [varchar](16) NOT NULL ,
+[acc_ver] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPCommLine_p1_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPCommLine_p1_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPCommLine_p2_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPCommLine_p2_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPCommLine_p3_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPCommLine_p3_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq3_p1_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq3_p1_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq3_p2_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq3_p2_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq3_p3_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq3_p3_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq5_p1_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq5_p1_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq5_p2_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq5_p2_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubSNPSeq5_p3_human] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
-)
+CREATE TABLE [SubSNPSeq5_p3_human]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [dn_table_rowcount] (
-       [tabname] [varchar] (64) NOT NULL ,
-       [row_cnt] [int] NOT NULL ,
-       [build_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL ,
-       [rows_in_spaceused] [int] NULL ,
-       [reserved_KB_spaceused] [int] NULL ,
-       [data_KB_spaceused] [int] NULL ,
-       [index_size_KB_spaceused] [int] NULL ,
-       [unused_KB_spaceused] [int] NULL 
-)
+CREATE TABLE [dn_table_rowcount]
+(
+[tabname] [varchar](64) NOT NULL ,
+[row_cnt] [int] NOT NULL ,
+[build_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL ,
+[rows_in_spaceused] [int] NULL ,
+[reserved_KB_spaceused] [int] NULL ,
+[data_KB_spaceused] [int] NULL ,
+[index_size_KB_spaceused] [int] NULL ,
+[unused_KB_spaceused] [int] NULL
+)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/dbSNP_sup_table_postgresql.sql b/schema/human_9606_schema/dbSNP_sup_table_postgresql.sql
index 8ef049183e2a373cbda408df8248cb635a5d05e8..cce3306c86bcfc20a142d1d3a44e61aae3155820 100644 (file)
--- a/schema/human_9606_schema/dbSNP_sup_table_postgresql.sql
+++ b/schema/human_9606_schema/dbSNP_sup_table_postgresql.sql
@@ -1,106 +1,93 @@
-CREATE TABLE SubSNPAcc_p1_human (
-       subsnp_id int NOT NULL ,
-       acc_type_ind char (1) NOT NULL ,
-       acc_part varchar (16) NOT NULL ,
-       acc_ver int NULL 
-)
-;
-
-CREATE TABLE SubSNPAcc_p2_human (
-       subsnp_id int NOT NULL ,
-       acc_type_ind char (1) NOT NULL ,
-       acc_part varchar (16) NOT NULL ,
-       acc_ver int NULL 
-)
-;
-
-CREATE TABLE SubSNPAcc_p3_human (
-       subsnp_id int NOT NULL ,
-       acc_type_ind char (1) NOT NULL ,
-       acc_part varchar (16) NOT NULL ,
-       acc_ver int NULL 
-)
-;
-
-CREATE TABLE SubSNPCommLine_p1_human (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPCommLine_p2_human (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPCommLine_p3_human (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq3_p1_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq3_p2_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq3_p3_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq5_p1_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq5_p2_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq5_p3_human (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE dn_table_rowcount (
-       tabname varchar (64) NOT NULL ,
-       row_cnt int NOT NULL ,
-       build_id int NOT NULL ,
-       update_time TIMESTAMP NOT NULL ,
-       rows_in_spaceused int NULL ,
-       reserved_KB_spaceused int NULL ,
-       data_KB_spaceused int NULL ,
-       index_size_KB_spaceused int NULL ,
-       unused_KB_spaceused int NULL 
-)
-;
-
+CREATE TABLE SubSNPAcc_p1_human
+(
+subsnp_id int NOT NULL ,
+acc_type_ind char(1) NOT NULL ,
+acc_part varchar(16) NOT NULL ,
+acc_ver int NULL
+);
+CREATE TABLE SubSNPAcc_p2_human
+(
+subsnp_id int NOT NULL ,
+acc_type_ind char(1) NOT NULL ,
+acc_part varchar(16) NOT NULL ,
+acc_ver int NULL
+);
+CREATE TABLE SubSNPAcc_p3_human
+(
+subsnp_id int NOT NULL ,
+acc_type_ind char(1) NOT NULL ,
+acc_part varchar(16) NOT NULL ,
+acc_ver int NULL
+);
+CREATE TABLE SubSNPCommLine_p1_human
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPCommLine_p2_human
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPCommLine_p3_human
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq3_p1_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq3_p2_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq3_p3_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq5_p1_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq5_p2_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq5_p3_human
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE dn_table_rowcount
+(
+tabname varchar(64) NOT NULL ,
+row_cnt int NOT NULL ,
+build_id int NOT NULL ,
+update_time TIMESTAMP NOT NULL ,
+rows_in_spaceused int NULL ,
+reserved_KB_spaceused int NULL ,
+data_KB_spaceused int NULL ,
+index_size_KB_spaceused int NULL ,
+unused_KB_spaceused int NULL
+);

diff --git a/schema/human_9606_schema/human_9606_constraint.sql b/schema/human_9606_schema/human_9606_constraint.sql
index b2c9097a05e87cd7eb3959eb19e897a1edf9aec4..396b03c95735af1688a71e6e55fb109027efde01 100644 (file)
--- a/schema/human_9606_schema/human_9606_constraint.sql
+++ b/schema/human_9606_schema/human_9606_constraint.sql
@@ -1,511 +1,212 @@
-ALTER TABLE [AlleleFreqBySsPop] ADD 
-       CONSTRAINT [pk_AlleleFreqBySsPop_b129] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [pop_id],
-               [allele_id]
-       )
+ALTER TABLE [AlleleFreqBySsPop] ADD CONSTRAINT [pk_AlleleFreqBySsPop_b129]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[pop_id] ASC,[allele_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Batch] ADD 
-       CONSTRAINT [pk_Batch] PRIMARY KEY  CLUSTERED 
-       (
-               [batch_id]
-       ),
-       CONSTRAINT [ck_batch_type] CHECK ([batch_type]='ANC' OR ([batch_type]='MNT' OR ([batch_type]='VAL' OR ([batch_type]='POP' OR ([batch_type]='IND' OR ([batch_type]='SNP' OR [batch_type]='NOV'))))))
+ALTER TABLE [Batch] ADD CONSTRAINT [pk_Batch]  PRIMARY KEY  CLUSTERED ([batch_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchCita] ADD 
-       CONSTRAINT [pk_BatchCita] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [position]
-       )
+ALTER TABLE [BatchCita] ADD CONSTRAINT [pk_BatchCita]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[position] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchCommLine] ADD 
-       CONSTRAINT [pk_BatchCommLine] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [line_num]
-       )
+ALTER TABLE [BatchCommLine] ADD CONSTRAINT [pk_BatchCommLine]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchCultivar] ADD 
-       CONSTRAINT [pk_BatchCultivar] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [line_num]
-       )
+ALTER TABLE [BatchCultivar] ADD CONSTRAINT [pk_BatchCultivar]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchMeExLine] ADD 
-       CONSTRAINT [pk_BatchMeExLine] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [line_num]
-       )
+ALTER TABLE [BatchMeExLine] ADD CONSTRAINT [pk_BatchMeExLine]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchStrain] ADD 
-       CONSTRAINT [pk_BatchStrain] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [line_num]
-       )
+ALTER TABLE [BatchStrain] ADD CONSTRAINT [pk_BatchStrain]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [BatchValCode] ADD 
-       CONSTRAINT [pk_BatchValCode] PRIMARY KEY  CLUSTERED 
-       (
-               [batch_id]
-       )
+ALTER TABLE [BatchValCode] ADD CONSTRAINT [pk_BatchValCode]  PRIMARY KEY  CLUSTERED ([batch_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Contact] ADD 
-       CONSTRAINT [pk_Contact] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [handle]
-       )
+ALTER TABLE [ClinSigCode] ADD CONSTRAINT [DF__ClinSigCo__creat__5FBB8CD0] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [ClinSigCode] ADD CONSTRAINT [DF__ClinSigCo__last___60AFB109] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [ClinSigCode] ADD CONSTRAINT [PK__ClinSigC__357D4CF85DD3445E]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [FreqSummaryBySsPop] ADD 
-       CONSTRAINT [pk_FreqSummaryBySsPop] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [pop_id]
-       )
+ALTER TABLE [Contact] ADD CONSTRAINT [pk_Contact]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[handle] ASC)\r

 GO
 
 
 GO
 
 

-ALTER TABLE [GeneIdToName] ADD 
-       CONSTRAINT [pk_GeneIdToName] PRIMARY KEY  CLUSTERED 
-       (
-               [gene_id]
-       )
+ALTER TABLE [GeneIdToName] ADD CONSTRAINT [pk_GeneIdToName]  PRIMARY KEY  CLUSTERED ([gene_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [GtyFreqBySsPop] ADD 
-       CONSTRAINT [pk_GtyFreqBySsPop_b129] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [pop_id],
-               [unigty_id]
-       )
+ALTER TABLE [GtyFreqBySsPop] ADD CONSTRAINT [pk_GtyFreqBySsPop_b129]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[pop_id] ASC,[unigty_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [IndGrpCode] ADD 
-       CONSTRAINT [pk_IndGrpCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [IndGrpCode] ADD CONSTRAINT [pk_IndGrpCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [IndivBySource] ADD 
-       CONSTRAINT [pk_IndivBySource] PRIMARY KEY  NONCLUSTERED 
-       (
-               [src_id],
-               [src_ind_id]
-       )
+ALTER TABLE [IndivBySource] ADD CONSTRAINT [pk_IndivBySource]  PRIMARY KEY  NONCLUSTERED ([src_id] ASC,[src_ind_id] ASC)\r

 GO
 
 
 GO
 
 

-
-ALTER TABLE [Individual] ADD 
-       CONSTRAINT [pk_Individual] PRIMARY KEY  CLUSTERED 
-       (
-               [ind_id]
-       )
+ALTER TABLE [Individual] ADD CONSTRAINT [pk_Individual]  PRIMARY KEY  CLUSTERED ([ind_id] ASC)\r

 GO
 
 GO
 

-
-
-ALTER TABLE [Pedigree] ADD 
-       CONSTRAINT [p_ped_id] PRIMARY KEY  CLUSTERED 
-       (
-               [ped_id]
-       )
+ALTER TABLE [OmimVarLocusIdSNP] ADD CONSTRAINT [fk_OmimVarLocusIdSNP_snp_id] FOREIGN KEY (snp_id) REFERENCES [b134_SNP](snp_id)\r

 GO
 
 GO
 

-
-ALTER TABLE [PedigreeIndividual] ADD 
-       CONSTRAINT [pk_PedigreeIndividual] PRIMARY KEY  CLUSTERED 
-       (
-               [ped_id],
-               [ind_id]
-       )
+ALTER TABLE [Pedigree] ADD CONSTRAINT [p_ped_id]  PRIMARY KEY  CLUSTERED ([ped_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [PopLine] ADD 
-       CONSTRAINT [pk_PopLine] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_id],
-               [line_num]
-       )
+ALTER TABLE [PedigreeIndividual] ADD CONSTRAINT [pk_PedigreeIndividual]  PRIMARY KEY  CLUSTERED ([ped_id] ASC,[ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [PopMandLine] ADD 
-       CONSTRAINT [pk_PopMandLine] PRIMARY KEY  NONCLUSTERED 
-       (
-               [pop_id],
-               [line_num]
-       )
+ALTER TABLE [PopLine] ADD CONSTRAINT [pk_PopLine]  PRIMARY KEY  CLUSTERED ([pop_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Population] ADD 
-       CONSTRAINT [pk_Population_pop_id] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_id]
-       )
+ALTER TABLE [PopMandLine] ADD CONSTRAINT [pk_PopMandLine]  PRIMARY KEY  NONCLUSTERED ([pop_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [Population] ADD CONSTRAINT [pk_Population_pop_id]  PRIMARY KEY  CLUSTERED ([pop_id] ASC)\r
+GO

 
 
 
 
 
 
 
 

-ALTER TABLE [SNPAlleleFreq] ADD 
-       CONSTRAINT [pk_SNPAlleleFreq] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id],
-               [allele_id]
-       )
+ALTER TABLE [SNPAlleleFreq] ADD CONSTRAINT [pk_SNPAlleleFreq]  PRIMARY KEY  CLUSTERED ([snp_id] ASC,[allele_id] ASC)\r

 GO
 
 
 GO
 
 

-ALTER TABLE [SNPAncestralAllele] ADD 
-       CONSTRAINT [DF__SNPAncest__batch__664F5149] DEFAULT ((0)) FOR [batch_id],
-       CONSTRAINT [pk_SNPAncestralAllele] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id],
-               [batch_id]
-       )
+ALTER TABLE [SNPAncestralAllele] ADD CONSTRAINT [DF__SNPAncest__batch__664F5149] DEFAULT ((0)) FOR [batch_id]
+ALTER TABLE [SNPAncestralAllele] ADD CONSTRAINT [pk_SNPAncestralAllele]  PRIMARY KEY  CLUSTERED ([snp_id] ASC,[batch_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNPGtyFreq] ADD 
-       CONSTRAINT [pk_SNPGtyFreq] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id],
-               [unigty_id]
-       )
+ALTER TABLE [SNPClinSig] ADD CONSTRAINT [DF__SNPClinSi__upd_t__1BBC3395] DEFAULT (GETDATE()) FOR [upd_time]
+ALTER TABLE [SNPClinSig] ADD CONSTRAINT [PK__SNPClinS__430A13A119D3EB23]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNPHWProb] ADD 
-       CONSTRAINT [pk_SNPHWProb] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id]
-       )
+ALTER TABLE [SNPGtyFreq] ADD CONSTRAINT [pk_SNPGtyFreq]  PRIMARY KEY  CLUSTERED ([snp_id] ASC,[unigty_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNPHistory] ADD 
-       CONSTRAINT [pk_SNPHistory] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id]
-       )
+ALTER TABLE [SNPHWProb] ADD CONSTRAINT [pk_SNPHWProb]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNPPubmed] ADD 
-       CONSTRAINT [pk_SNPPubmed] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id],
-               [subsnp_id],
-               [pubmed_id],
-               [type]
-       )
+ALTER TABLE [SNPHistory] ADD CONSTRAINT [pk_SNPHistory]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 
 GO
 
 

-
-
-ALTER TABLE [SNPVal] ADD 
-       CONSTRAINT [pk_SNPVal] PRIMARY KEY  CLUSTERED 
-       (
-               [batch_id],
-               [snp_id]
-       )
+ALTER TABLE [SNPSubSNPLink] ADD CONSTRAINT [fk_SNPSubSNPLink_ss] FOREIGN KEY (subsnp_id) REFERENCES [SubSNP](subsnp_id)\r

 GO
 
 
 GO
 
 

-
-ALTER TABLE [SNP_bitfield] ADD 
-       CONSTRAINT [pk_SNP_bitfield] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id]
-       )
+ALTER TABLE [SNPSuspect] ADD CONSTRAINT [DF__SNPSuspec__upd_t__18BF0002] DEFAULT (GETDATE()) FOR [upd_time]
+ALTER TABLE [SNPSuspect] ADD CONSTRAINT [PK__SNPSuspe__430A13A116D6B790]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubPop] ADD 
-       CONSTRAINT [DF__SubPopB10__last___19AB9A98] DEFAULT (getdate()) FOR [last_updated_time],
-        PRIMARY KEY  CLUSTERED 
-       (
-               [batch_id],
-               [subsnp_id],
-               [pop_id],
-               [type]
-       ),
-       CONSTRAINT [fk_SubPop_batch_id] FOREIGN KEY 
-       (
-               [batch_id]
-       ) REFERENCES [Batch] (
-               [batch_id]
-       ),
-       CONSTRAINT [fk_SubPop_pop] FOREIGN KEY 
-       (
-               [pop_id]
-       ) REFERENCES [Population] (
-               [pop_id]
-       ),
-        CHECK ([type] = 'GTY' or ([type] = 'HET' or [type] = 'ALE'))
+ALTER TABLE [SNPVal] ADD CONSTRAINT [pk_SNPVal]  PRIMARY KEY  CLUSTERED ([batch_id] ASC,[snp_id] ASC)\r

 GO
 
 
 GO
 
 

-ALTER TABLE [SubPopAllele] ADD 
-       CONSTRAINT [fk_SubPopAllele_bid_ss_pop_type] FOREIGN KEY 
-       (
-               [batch_id],
-               [subsnp_id],
-               [pop_id],
-               [type]
-       ) REFERENCES [SubPop] (
-               [batch_id],
-               [subsnp_id],
-               [pop_id],
-               [type]
-       ) ON DELETE CASCADE 
+ALTER TABLE [SNP_bitfield] ADD CONSTRAINT [pk_SNP_bitfield]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubPopGty] ADD 
-       CONSTRAINT [pk_SubPopGty] PRIMARY KEY  CLUSTERED 
-       (
-               [subpop_id],
-               [gty_id]
-       )
+ALTER TABLE [SubPop] ADD CONSTRAINT [DF__SubPopB10__last___19AB9A98] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [SubPop] ADD CONSTRAINT [fk_SubPop_batch_id] FOREIGN KEY (batch_id) REFERENCES [Batch](batch_id)\r

 GO
 GO

-
-
-ALTER TABLE [SubSNP] ADD 
-       CONSTRAINT [pk_SubSNP] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id]
-       )
+ALTER TABLE [SubPop] ADD CONSTRAINT [fk_SubPop_pop] FOREIGN KEY (pop_id) REFERENCES [Population](pop_id)\r

 GO
 GO

-
-
-ALTER TABLE [SubSNPAcc_ins] ADD 
-       CONSTRAINT [pk_SubSNPAcc] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [acc_part],
-               [acc_type_ind]
-       ),
-       CONSTRAINT [ck_SubSNPAcc_ins] CHECK ([subsnp_id]>=(30000001) AND [subsnp_id]<=(300000000))
+ALTER TABLE [SubPop] ADD CONSTRAINT [PK__SubPop_new__180E3640]  PRIMARY KEY  CLUSTERED ([batch_id] ASC,[subsnp_id] ASC,[pop_id] ASC,[type] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPCommLine_ins] ADD 
-       CONSTRAINT [pk_SubSNPCommLine] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPCommLine_ins] CHECK ([subsnp_id]>=(30000001) AND [subsnp_id]<=(300000000))
+ALTER TABLE [SubPopAllele] ADD CONSTRAINT [fk_SubPopAllele_bid_ss_pop_type] FOREIGN KEY (batch_id,subsnp_id,pop_id,type) REFERENCES [SubPop](batch_id,subsnp_id,pop_id,type)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPHGVS] ADD 
-       CONSTRAINT [pk_SubSNPHGVS] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id]
-       )
+ALTER TABLE [SubPopGty] ADD CONSTRAINT [pk_SubPopGty]  PRIMARY KEY  CLUSTERED ([subpop_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPLinkout] ADD 
-       CONSTRAINT [DF__SubSNPLin__link___660506BC] DEFAULT ('NA') FOR [link_type],
-       CONSTRAINT [pk_SubSNPLinkout] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [link_type]
-       ),
-       CONSTRAINT [ck_SubSNPLinkout_link_type] CHECK ([link_type]='NA' OR [link_type]='OTH' OR [link_type]='SRC')
+ALTER TABLE [SubSNP] ADD CONSTRAINT [pk_SubSNP]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPMdFailLn] ADD 
-       CONSTRAINT [pk_SubSNPMdFailLn] PRIMARY KEY  NONCLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       )
+ALTER TABLE [SubSNPAcc_ins] ADD CONSTRAINT [pk_SubSNPAcc]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[acc_type_ind] ASC,[acc_part] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPNoVariSeq] ADD 
-       CONSTRAINT [pk_SubSNPNoVariSeq] PRIMARY KEY  NONCLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       )
+ALTER TABLE [SubSNPCommLine_ins] ADD CONSTRAINT [pk_SubSNPCommLine]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPOmim] ADD 
-       CONSTRAINT [pk_SubSNPOmim] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id]
-       )
+ALTER TABLE [SubSNPHGVS] ADD CONSTRAINT [pk_SubSNPHGVS]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPPubmed] ADD 
-       CONSTRAINT [pk_SubSNPPubmed] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [line_num]
-       )
+ALTER TABLE [SubSNPLinkout] ADD CONSTRAINT [DF__SubSNPLin__link___660506BC] DEFAULT ('NA') FOR [link_type]
+ALTER TABLE [SubSNPLinkout] ADD CONSTRAINT [pk_SubSNPLinkout]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[link_type] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq3_ins] ADD 
-       CONSTRAINT [pk_SubSNPSeq3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq3_ins] CHECK ([subsnp_id]>=(30000001) AND [subsnp_id]<=(300000000))
+ALTER TABLE [SubSNPMdFailLn] ADD CONSTRAINT [pk_SubSNPMdFailLn]  PRIMARY KEY  NONCLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeq5_ins] ADD 
-       CONSTRAINT [pk_SubSNPSeq5] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [type],
-               [line_num]
-       ),
-       CONSTRAINT [ck_SubSNPSeq5_ins] CHECK ([subsnp_id]>=(30000001) AND [subsnp_id]<=(300000000))
+ALTER TABLE [SubSNPNoVariSeq] ADD CONSTRAINT [pk_SubSNPNoVariSeq]  PRIMARY KEY  NONCLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNPSeqPos] ADD 
-       CONSTRAINT [pk_SubSNPSeqPos] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id]
-       )
+ALTER TABLE [SubSNPOmim] ADD CONSTRAINT [pk_SubSNPOmim]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubSNP_top_or_bot] ADD 
-       CONSTRAINT [PK__t_ss_top_or_bot__0D5DFFA8] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id]
-       )
+ALTER TABLE [SubSNPPubmed] ADD CONSTRAINT [pk_SubSNPPubmed]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [SubSNPSeq3_ins] ADD CONSTRAINT [pk_SubSNPSeq3]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r
+GO

 
 

-ALTER TABLE [SubmittedIndividual] ADD 
-       CONSTRAINT [DF__Submitted__ploid__41661CE5] DEFAULT (2) FOR [ploidy],
-       CONSTRAINT [pk_SubmittedIndividual] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_id],
-               [loc_ind_id_upp]
-       )
+ALTER TABLE [SubSNPSeq5_ins] ADD CONSTRAINT [pk_SubSNPSeq5]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC,[type] ASC,[line_num] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [SubSNPSeqPos] ADD CONSTRAINT [pk_SubSNPSeqPos]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC)\r
+GO

 
 

-ALTER TABLE [Synonym] ADD 
-       CONSTRAINT [pk_Synonym] PRIMARY KEY  NONCLUSTERED 
-       (
-               [subsnp_id],
-               [type]
-       )
+ALTER TABLE [SubSNP_top_or_bot] ADD CONSTRAINT [PK__t_ss_top_or_bot__0D5DFFA8]  PRIMARY KEY  CLUSTERED ([subsnp_id] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [SubmittedIndividual] ADD CONSTRAINT [DF__Submitted__ploid__41661CE5] DEFAULT (2) FOR [ploidy]
+ALTER TABLE [SubmittedIndividual] ADD CONSTRAINT [pk_SubmittedIndividual]  PRIMARY KEY  CLUSTERED ([pop_id] ASC,[loc_ind_id_upp] ASC)\r
+GO

 
 

-ALTER TABLE [b132_ContigInfo_37_1] ADD 
-       CONSTRAINT [pk_b132_ContigInfo] PRIMARY KEY  CLUSTERED 
-       (
-               [ctg_id]
-       )
+ALTER TABLE [Synonym] ADD CONSTRAINT [pk_Synonym]  PRIMARY KEY  NONCLUSTERED ([subsnp_id] ASC,[type] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [b135_ContigInfo_37_3] ADD CONSTRAINT [df_b135_ContigInfo_37_3_last_updated_time] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [b135_ContigInfo_37_3] ADD CONSTRAINT [pk_b135_ContigInfo_37_3]  PRIMARY KEY  CLUSTERED ([contig_gi] ASC)\r
+GO

 
 
 
 
 
 

+ALTER TABLE [b135_MapLink_37_3] ADD CONSTRAINT [fk_b135_MapLink_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+GO

 
 
 
 
 
 

-ALTER TABLE [b132_SNPContigLoc_37_1] ADD 
-       CONSTRAINT [ck_snp_type] CHECK ([snp_type]='rs')
+ALTER TABLE [b135_SNPChrPosOnRef_37_3] ADD CONSTRAINT [fk_b135_SNPChrPosOnRef_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r

 GO
 
 GO
 

-
-ALTER TABLE [b132_SNPContigLocusId_37_1] ADD 
-       CONSTRAINT [ck_fxn] CHECK ([fxn_class]=(75) OR [fxn_class]=(73) OR [fxn_class]=(55) OR [fxn_class]=(53) OR [fxn_class]=(45) OR [fxn_class]=(44) OR [fxn_class]=(43) OR [fxn_class]=(42) OR [fxn_class]=(41) OR [fxn_class]=(15) OR [fxn_class]=(13) OR [fxn_class]=(8) OR [fxn_class]=(6) OR [fxn_class]=(3))
+ALTER TABLE [b135_SNPContigLoc_37_3] ADD CONSTRAINT [fk_b135_SNPContigLoc_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r

 GO
 
 GO
 

-
-ALTER TABLE [b132_SNPMapInfo_37_1] ADD 
-       CONSTRAINT [ck_SNPMapInfo_snp_type] CHECK ([snp_type]='rs')
+ALTER TABLE [b135_SNPContigLocusId_37_3] ADD CONSTRAINT [fk_b135_SNPContigLocusId_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_IND_batchCount] ADD 
-       CONSTRAINT [pk_dn_IND_batchCount] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id],
-               [pop_id]
-       )
+ALTER TABLE [b135_SNPContigProtein_37_3] ADD CONSTRAINT [fk_b135_SNPContigProtein_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r

 GO
 
 GO
 

+ALTER TABLE [b135_SNPMapInfo_37_3] ADD CONSTRAINT [fk_b135_SNPMapInfo_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+GO

 
 

+ALTER TABLE [b135_SNPMapLinkProtein_37_3] ADD CONSTRAINT [fk_b135_SNPMapLinkProtein_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+GO

 
 

-ALTER TABLE [dn_PopulationIndGrp] ADD 
-       CONSTRAINT [pk_dn_PopulationIndGrp] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_id]
-       )
+ALTER TABLE [dn_IND_batchCount] ADD CONSTRAINT [pk_dn_IND_batchCount]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC,[pop_id] ASC)\r

 GO
 
 
 GO
 
 

-ALTER TABLE [dn_batchCount] ADD 
-       CONSTRAINT [pk_dn_batchCount] PRIMARY KEY  NONCLUSTERED 
-       (
-               [batch_id]
-       )
+ALTER TABLE [dn_PopulationIndGrp] ADD CONSTRAINT [pk_dn_PopulationIndGrp]  PRIMARY KEY  CLUSTERED ([pop_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_handleCount] ADD 
-       CONSTRAINT [pk_dn_handleCount] PRIMARY KEY  NONCLUSTERED 
-       (
-               [handle],
-               [batch_type]
-       )
+ALTER TABLE [dn_batchCount] ADD CONSTRAINT [pk_dn_batchCount]  PRIMARY KEY  NONCLUSTERED ([batch_id] ASC)\r

 GO
 
 GO
 

+ALTER TABLE [dn_handleCount] ADD CONSTRAINT [pk_dn_handleCount]  PRIMARY KEY  NONCLUSTERED ([handle] ASC,[batch_type] ASC)\r
+GO

 
 
 
 
 
 

diff --git a/schema/human_9606_schema/human_9606_constraint_postgresql.sql b/schema/human_9606_schema/human_9606_constraint_postgresql.sql
index 38eca52e476c010678b117dc208b36c579bec465..92d597308de144e205b928b11b90792595981552 100644 (file)
--- a/schema/human_9606_schema/human_9606_constraint_postgresql.sql
+++ b/schema/human_9606_schema/human_9606_constraint_postgresql.sql
@@ -1,457 +1,72 @@
-ALTER TABLE AlleleFreqBySsPop ADD 
-       CONSTRAINT pk_AlleleFreqBySsPop_b129 PRIMARY KEY   
-       (
-               subsnp_id,
-               pop_id,
-               allele_id
-       )
-;
-
-ALTER TABLE Batch ADD 
-       CONSTRAINT pk_Batch PRIMARY KEY   
-       (
-               batch_id
-       ), ADD
-       CONSTRAINT ck_batch_type CHECK (batch_type='ANC' OR (batch_type='MNT' OR (batch_type='VAL' OR (batch_type='POP' OR (batch_type='IND' OR (batch_type='SNP' OR batch_type='NOV'))))))
-;
-
-ALTER TABLE BatchCita ADD 
-       CONSTRAINT pk_BatchCita PRIMARY KEY   
-       (
-               batch_id,
-               position
-       )
-;
-
-ALTER TABLE BatchCommLine ADD 
-       CONSTRAINT pk_BatchCommLine PRIMARY KEY   
-       (
-               batch_id,
-               line_num
-       )
-;
-
-ALTER TABLE BatchCultivar ADD 
-       CONSTRAINT pk_BatchCultivar PRIMARY KEY   
-       (
-               batch_id,
-               line_num
-       )
-;
-
-ALTER TABLE BatchMeExLine ADD 
-       CONSTRAINT pk_BatchMeExLine PRIMARY KEY   
-       (
-               batch_id,
-               line_num
-       )
-;
-
-ALTER TABLE BatchStrain ADD 
-       CONSTRAINT pk_BatchStrain PRIMARY KEY   
-       (
-               batch_id,
-               line_num
-       )
-;
-
-ALTER TABLE BatchValCode ADD 
-       CONSTRAINT pk_BatchValCode PRIMARY KEY   
-       (
-               batch_id
-       )
-;
-
-ALTER TABLE Contact ADD 
-       CONSTRAINT pk_Contact PRIMARY KEY   
-       (
-               batch_id,
-               handle
-       )
-;
-
-ALTER TABLE FreqSummaryBySsPop ADD 
-       CONSTRAINT pk_FreqSummaryBySsPop PRIMARY KEY   
-       (
-               subsnp_id,
-               pop_id
-       )
-;
-
-ALTER TABLE GeneIdToName ADD 
-       CONSTRAINT pk_GeneIdToName PRIMARY KEY   
-       (
-               gene_id
-       )
-;
-
-ALTER TABLE GtyFreqBySsPop ADD 
-       CONSTRAINT pk_GtyFreqBySsPop_b129 PRIMARY KEY   
-       (
-               subsnp_id,
-               pop_id,
-               unigty_id
-       )
-;
-
-ALTER TABLE IndGrpCode ADD 
-       CONSTRAINT pk_IndGrpCode PRIMARY KEY   
-       (
-               code
-       )
-;
-
-ALTER TABLE IndivBySource ADD 
-       CONSTRAINT pk_IndivBySource PRIMARY KEY   
-       (
-               src_id,
-               src_ind_id
-       )
-;
-
-
-ALTER TABLE Individual ADD 
-       CONSTRAINT pk_Individual PRIMARY KEY   
-       (
-               ind_id
-       )
-;
-
-
-ALTER TABLE Pedigree ADD 
-       CONSTRAINT p_ped_id PRIMARY KEY   
-       (
-               ped_id
-       )
-;
-
-ALTER TABLE PedigreeIndividual ADD 
-       CONSTRAINT pk_PedigreeIndividual PRIMARY KEY   
-       (
-               ped_id,
-               ind_id
-       )
-;
-
-ALTER TABLE PopLine ADD 
-       CONSTRAINT pk_PopLine PRIMARY KEY   
-       (
-               pop_id,
-               line_num
-       )
-;
-
-ALTER TABLE PopMandLine ADD 
-       CONSTRAINT pk_PopMandLine PRIMARY KEY   
-       (
-               pop_id,
-               line_num
-       )
-;
-
-ALTER TABLE Population ADD 
-       CONSTRAINT pk_Population_pop_id PRIMARY KEY   
-       (
-               pop_id
-       )
-;
-
-
-
-
-ALTER TABLE SNPAlleleFreq ADD 
-       CONSTRAINT pk_SNPAlleleFreq PRIMARY KEY   
-       (
-               snp_id,
-               allele_id
-       )
-;
-
-ALTER TABLE SNPAncestralAllele ADD 
---     CONSTRAINT DF__SNPAncest__batch__664F5149 DEFAULT ((0)) FOR batch_id,
-       CONSTRAINT pk_SNPAncestralAllele PRIMARY KEY   
-       (
-               snp_id,
-               batch_id
-       )
-;
-
-ALTER TABLE SNPGtyFreq ADD 
-       CONSTRAINT pk_SNPGtyFreq PRIMARY KEY   
-       (
-               snp_id,
-               unigty_id
-       )
-;
-
-ALTER TABLE SNPHWProb ADD 
-       CONSTRAINT pk_SNPHWProb PRIMARY KEY   
-       (
-               snp_id
-       )
-;
-
-ALTER TABLE SNPHistory ADD 
-       CONSTRAINT pk_SNPHistory PRIMARY KEY   
-       (
-               snp_id
-       )
-;
-
-ALTER TABLE SNPPubmed ADD 
-       CONSTRAINT pk_SNPPubmed PRIMARY KEY   
-       (
-               snp_id,
-               subsnp_id,
-               pubmed_id,
-               type
-       )
-;
-
-
-
-ALTER TABLE SNPVal ADD 
-       CONSTRAINT pk_SNPVal PRIMARY KEY   
-       (
-               batch_id,
-               snp_id
-       )
-;
-
-
-ALTER TABLE SNP_bitfield ADD 
-       CONSTRAINT pk_SNP_bitfield PRIMARY KEY   
-       (
-               snp_id
-       )
-;
-
-ALTER TABLE SubPop ADD 
---     CONSTRAINT DF__SubPopB10__last___19AB9A98 DEFAULT (getdate()) FOR last_updated_time,
-        PRIMARY KEY   
-       (
-               batch_id,
-               subsnp_id,
-               pop_id,
-               type
-       ), ADD
-       CONSTRAINT fk_SubPop_batch_id FOREIGN KEY 
-       (
-               batch_id
-       ) REFERENCES Batch (
-               batch_id
-       ), ADD
-       CONSTRAINT fk_SubPop_pop FOREIGN KEY 
-       (
-               pop_id
-       ) REFERENCES Population (
-               pop_id
-       ), ADD
-        CHECK (type = 'GTY' or (type = 'HET' or type = 'ALE'))
-;
-
-ALTER TABLE SubPopAllele ADD 
-       CONSTRAINT fk_SubPopAllele_bid_ss_pop_type FOREIGN KEY 
-       (
-               batch_id,
-               subsnp_id,
-               pop_id,
-               type
-       ) REFERENCES SubPop (
-               batch_id,
-               subsnp_id,
-               pop_id,
-               type
-       ) ON DELETE CASCADE 
-;
-
-ALTER TABLE SubPopGty ADD 
-       CONSTRAINT pk_SubPopGty PRIMARY KEY   
-       (
-               subpop_id,
-               gty_id
-       )
-;
-
-ALTER TABLE SubSNP ADD 
-       CONSTRAINT pk_SubSNP PRIMARY KEY   
-       (
-               subsnp_id
-       )
-;
-
-ALTER TABLE SubSNPAcc_ins ADD 
-       CONSTRAINT pk_SubSNPAcc PRIMARY KEY   
-       (
-               subsnp_id,
-               acc_part,
-               acc_type_ind
-       ), ADD
-       CONSTRAINT ck_SubSNPAcc_ins CHECK (subsnp_id>=(30000001) AND subsnp_id<=(300000000))
-;
-
-ALTER TABLE SubSNPCommLine_ins ADD 
-       CONSTRAINT pk_SubSNPCommLine PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPCommLine_ins CHECK (subsnp_id>=(30000001) AND subsnp_id<=(300000000))
-;
-
-ALTER TABLE SubSNPHGVS ADD 
-       CONSTRAINT pk_SubSNPHGVS PRIMARY KEY   
-       (
-               subsnp_id
-       )
-;
-
-ALTER TABLE SubSNPLinkout ADD 
---     CONSTRAINT DF__SubSNPLin__link___660506BC DEFAULT ('NA') FOR link_type,
-       CONSTRAINT pk_SubSNPLinkout PRIMARY KEY   
-       (
-               subsnp_id,
-               link_type
-       ), ADD
-       CONSTRAINT ck_SubSNPLinkout_link_type CHECK (link_type='NA' OR link_type='OTH' OR link_type='SRC')
-;
-
-ALTER TABLE SubSNPMdFailLn ADD 
-       CONSTRAINT pk_SubSNPMdFailLn PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       )
-;
-
-ALTER TABLE SubSNPNoVariSeq ADD 
-       CONSTRAINT pk_SubSNPNoVariSeq PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       )
-;
-
-ALTER TABLE SubSNPOmim ADD 
-       CONSTRAINT pk_SubSNPOmim PRIMARY KEY   
-       (
-               subsnp_id
-       )
-;
-
-ALTER TABLE SubSNPPubmed ADD 
-       CONSTRAINT pk_SubSNPPubmed PRIMARY KEY   
-       (
-               subsnp_id,
-               line_num
-       )
-;
-
-ALTER TABLE SubSNPSeq3_ins ADD 
-       CONSTRAINT pk_SubSNPSeq3 PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq3_ins CHECK (subsnp_id>=(30000001) AND subsnp_id<=(300000000))
-;
-
-ALTER TABLE SubSNPSeq5_ins ADD 
-       CONSTRAINT pk_SubSNPSeq5 PRIMARY KEY   
-       (
-               subsnp_id,
-               type,
-               line_num
-       ), ADD
-       CONSTRAINT ck_SubSNPSeq5_ins CHECK (subsnp_id>=(30000001) AND subsnp_id<=(300000000))
-;
-
-ALTER TABLE SubSNPSeqPos ADD 
-       CONSTRAINT pk_SubSNPSeqPos PRIMARY KEY   
-       (
-               subsnp_id
-x      )
-;
-
-ALTER TABLE SubSNP_top_or_bot ADD 
-       CONSTRAINT PK__t_ss_top_or_bot__0D5DFFA8 PRIMARY KEY   
-       (
-               subsnp_id
-       )
-;
-
-ALTER TABLE SubmittedIndividual ADD 
---     CONSTRAINT DF__Submitted__ploid__41661CE5 DEFAULT (2) FOR ploidy,
-       CONSTRAINT pk_SubmittedIndividual PRIMARY KEY   
-       (
-               pop_id,
-               loc_ind_id_upp
-       )
-;
-
-ALTER TABLE Synonym ADD 
-       CONSTRAINT pk_Synonym PRIMARY KEY   
-       (
-               subsnp_id,
-               type
-       )
-;
-
-ALTER TABLE b132_ContigInfo_37_1 ADD 
-       CONSTRAINT pk_b132_ContigInfo PRIMARY KEY   
-       (
-               ctg_id
-       )
-;
-
-
-
-
-
-
-ALTER TABLE b132_SNPContigLoc_37_1 ADD 
-       CONSTRAINT ck_snp_type CHECK (snp_type='rs')
-;
-
-ALTER TABLE b132_SNPContigLocusId_37_1 ADD 
-       CONSTRAINT ck_fxn CHECK (fxn_class=(75) OR fxn_class=(73) OR fxn_class=(55) OR fxn_class=(53) OR fxn_class=(45) OR fxn_class=(44) OR fxn_class=(43) OR fxn_class=(42) OR fxn_class=(41) OR fxn_class=(15) OR fxn_class=(13) OR fxn_class=(8) OR fxn_class=(6) OR fxn_class=(3))
-;
-
-ALTER TABLE b132_SNPMapInfo_37_1 ADD 
-       CONSTRAINT ck_SNPMapInfo_snp_type CHECK (snp_type='rs')
-;
-
-ALTER TABLE dn_IND_batchCount ADD 
-       CONSTRAINT pk_dn_IND_batchCount PRIMARY KEY   
-       (
-               batch_id,
-               pop_id
-       )
-;
-
-
-ALTER TABLE dn_PopulationIndGrp ADD 
-       CONSTRAINT pk_dn_PopulationIndGrp PRIMARY KEY   
-       (
-               pop_id
-       )
-;
-
-ALTER TABLE dn_batchCount ADD 
-       CONSTRAINT pk_dn_batchCount PRIMARY KEY   
-       (
-               batch_id
-       )
-;
-
-ALTER TABLE dn_handleCount ADD 
-       CONSTRAINT pk_dn_handleCount PRIMARY KEY   
-       (
-               handle,
-               batch_type
-       )
-;
-
-
-
+ALTER TABLE AlleleFreqBySsPop ADD CONSTRAINT pk_AlleleFreqBySsPop_b129  PRIMARY KEY  (subsnp_id,pop_id,allele_id);
+ALTER TABLE Batch ADD CONSTRAINT pk_Batch  PRIMARY KEY  (batch_id);
+ALTER TABLE BatchCita ADD CONSTRAINT pk_BatchCita  PRIMARY KEY  (batch_id,position);
+ALTER TABLE BatchCommLine ADD CONSTRAINT pk_BatchCommLine  PRIMARY KEY  (batch_id,line_num);
+ALTER TABLE BatchCultivar ADD CONSTRAINT pk_BatchCultivar  PRIMARY KEY  (batch_id,line_num);
+ALTER TABLE BatchMeExLine ADD CONSTRAINT pk_BatchMeExLine  PRIMARY KEY  (batch_id,line_num);
+ALTER TABLE BatchStrain ADD CONSTRAINT pk_BatchStrain  PRIMARY KEY  (batch_id,line_num);
+ALTER TABLE BatchValCode ADD CONSTRAINT pk_BatchValCode  PRIMARY KEY  (batch_id);
+ALTER TABLE ClinSigCode ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE ClinSigCode ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE ClinSigCode ADD CONSTRAINT PK__ClinSigC__357D4CF85DD3445E  PRIMARY KEY  (code);
+ALTER TABLE Contact ADD CONSTRAINT pk_Contact  PRIMARY KEY  (batch_id,handle);
+ALTER TABLE GeneIdToName ADD CONSTRAINT pk_GeneIdToName  PRIMARY KEY  (gene_id);
+ALTER TABLE GtyFreqBySsPop ADD CONSTRAINT pk_GtyFreqBySsPop_b129  PRIMARY KEY  (subsnp_id,pop_id,unigty_id);
+ALTER TABLE IndGrpCode ADD CONSTRAINT pk_IndGrpCode  PRIMARY KEY  (code);
+ALTER TABLE IndivBySource ADD CONSTRAINT pk_IndivBySource  PRIMARY KEY  (src_id,src_ind_id);
+ALTER TABLE Individual ADD CONSTRAINT pk_Individual  PRIMARY KEY  (ind_id);
+ALTER TABLE OmimVarLocusIdSNP ADD CONSTRAINT fk_OmimVarLocusIdSNP_snp_id FOREIGN KEY (snp_id) REFERENCES b134_SNP(snp_id);
+ALTER TABLE Pedigree ADD CONSTRAINT p_ped_id  PRIMARY KEY  (ped_id);
+ALTER TABLE PedigreeIndividual ADD CONSTRAINT pk_PedigreeIndividual  PRIMARY KEY  (ped_id,ind_id);
+ALTER TABLE PopLine ADD CONSTRAINT pk_PopLine  PRIMARY KEY  (pop_id,line_num);
+ALTER TABLE PopMandLine ADD CONSTRAINT pk_PopMandLine  PRIMARY KEY  (pop_id,line_num);
+ALTER TABLE Population ADD CONSTRAINT pk_Population_pop_id  PRIMARY KEY  (pop_id);
+ALTER TABLE SNPAlleleFreq ADD CONSTRAINT pk_SNPAlleleFreq  PRIMARY KEY  (snp_id,allele_id);
+ALTER TABLE SNPAncestralAllele ALTER COLUMN batch_id SET DEFAULT (0);
+ALTER TABLE SNPAncestralAllele ADD CONSTRAINT pk_SNPAncestralAllele  PRIMARY KEY  (snp_id,batch_id);
+ALTER TABLE SNPClinSig ALTER COLUMN upd_time SET DEFAULT NOW();
+ALTER TABLE SNPClinSig ADD CONSTRAINT PK__SNPClinS__430A13A119D3EB23  PRIMARY KEY  (snp_id);
+ALTER TABLE SNPGtyFreq ADD CONSTRAINT pk_SNPGtyFreq  PRIMARY KEY  (snp_id,unigty_id);
+ALTER TABLE SNPHWProb ADD CONSTRAINT pk_SNPHWProb  PRIMARY KEY  (snp_id);
+ALTER TABLE SNPHistory ADD CONSTRAINT pk_SNPHistory  PRIMARY KEY  (snp_id);
+ALTER TABLE SNPSubSNPLink ADD CONSTRAINT fk_SNPSubSNPLink_ss FOREIGN KEY (subsnp_id) REFERENCES SubSNP(subsnp_id);
+ALTER TABLE SNPSuspect ALTER COLUMN upd_time SET DEFAULT NOW();
+ALTER TABLE SNPSuspect ADD CONSTRAINT PK__SNPSuspe__430A13A116D6B790  PRIMARY KEY  (snp_id);
+ALTER TABLE SNPVal ADD CONSTRAINT pk_SNPVal  PRIMARY KEY  (batch_id,snp_id);
+ALTER TABLE SNP_bitfield ADD CONSTRAINT pk_SNP_bitfield  PRIMARY KEY  (snp_id);
+ALTER TABLE SubPop ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE SubPop ADD CONSTRAINT fk_SubPop_batch_id FOREIGN KEY (batch_id) REFERENCES Batch(batch_id);
+ALTER TABLE SubPop ADD CONSTRAINT fk_SubPop_pop FOREIGN KEY (pop_id) REFERENCES Population(pop_id);
+ALTER TABLE SubPop ADD CONSTRAINT PK__SubPop_new__180E3640  PRIMARY KEY  (batch_id,subsnp_id,pop_id,type);
+ALTER TABLE SubPopAllele ADD CONSTRAINT fk_SubPopAllele_bid_ss_pop_type FOREIGN KEY (batch_id,subsnp_id,pop_id,type) REFERENCES SubPop(batch_id,subsnp_id,pop_id,type);
+ALTER TABLE SubPopGty ADD CONSTRAINT pk_SubPopGty  PRIMARY KEY  (subpop_id,gty_id);
+ALTER TABLE SubSNP ADD CONSTRAINT pk_SubSNP  PRIMARY KEY  (subsnp_id);
+ALTER TABLE SubSNPAcc_ins ADD CONSTRAINT pk_SubSNPAcc  PRIMARY KEY  (subsnp_id,acc_type_ind,acc_part);
+ALTER TABLE SubSNPCommLine_ins ADD CONSTRAINT pk_SubSNPCommLine  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPHGVS ADD CONSTRAINT pk_SubSNPHGVS  PRIMARY KEY  (subsnp_id);
+ALTER TABLE SubSNPLinkout ALTER COLUMN link_type SET DEFAULT 'NA';
+ALTER TABLE SubSNPLinkout ADD CONSTRAINT pk_SubSNPLinkout  PRIMARY KEY  (subsnp_id,link_type);
+ALTER TABLE SubSNPMdFailLn ADD CONSTRAINT pk_SubSNPMdFailLn  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPNoVariSeq ADD CONSTRAINT pk_SubSNPNoVariSeq  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPOmim ADD CONSTRAINT pk_SubSNPOmim  PRIMARY KEY  (subsnp_id);
+ALTER TABLE SubSNPPubmed ADD CONSTRAINT pk_SubSNPPubmed  PRIMARY KEY  (subsnp_id,line_num);
+ALTER TABLE SubSNPSeq3_ins ADD CONSTRAINT pk_SubSNPSeq3  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeq5_ins ADD CONSTRAINT pk_SubSNPSeq5  PRIMARY KEY  (subsnp_id,type,line_num);
+ALTER TABLE SubSNPSeqPos ADD CONSTRAINT pk_SubSNPSeqPos  PRIMARY KEY  (subsnp_id);
+ALTER TABLE SubSNP_top_or_bot ADD CONSTRAINT PK__t_ss_top_or_bot__0D5DFFA8  PRIMARY KEY  (subsnp_id);
+ALTER TABLE SubmittedIndividual ALTER COLUMN ploidy SET DEFAULT 2;
+ALTER TABLE SubmittedIndividual ADD CONSTRAINT pk_SubmittedIndividual  PRIMARY KEY  (pop_id,loc_ind_id_upp);
+ALTER TABLE Synonym ADD CONSTRAINT pk_Synonym  PRIMARY KEY  (subsnp_id,type);
+ALTER TABLE b135_ContigInfo_37_3 ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE b135_ContigInfo_37_3 ADD CONSTRAINT pk_b135_ContigInfo_37_3  PRIMARY KEY  (contig_gi);
+ALTER TABLE b135_MapLink_37_3 ADD CONSTRAINT fk_b135_MapLink_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPChrPosOnRef_37_3 ADD CONSTRAINT fk_b135_SNPChrPosOnRef_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPContigLoc_37_3 ADD CONSTRAINT fk_b135_SNPContigLoc_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPContigLocusId_37_3 ADD CONSTRAINT fk_b135_SNPContigLocusId_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPContigProtein_37_3 ADD CONSTRAINT fk_b135_SNPContigProtein_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPMapInfo_37_3 ADD CONSTRAINT fk_b135_SNPMapInfo_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b135_SNPMapLinkProtein_37_3 ADD CONSTRAINT fk_b135_SNPMapLinkProtein_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE dn_IND_batchCount ADD CONSTRAINT pk_dn_IND_batchCount  PRIMARY KEY  (batch_id,pop_id);
+ALTER TABLE dn_PopulationIndGrp ADD CONSTRAINT pk_dn_PopulationIndGrp  PRIMARY KEY  (pop_id);
+ALTER TABLE dn_batchCount ADD CONSTRAINT pk_dn_batchCount  PRIMARY KEY  (batch_id);
+ALTER TABLE dn_handleCount ADD CONSTRAINT pk_dn_handleCount  PRIMARY KEY  (handle,batch_type);

diff --git a/schema/human_9606_schema/human_9606_index.sql b/schema/human_9606_schema/human_9606_index.sql
index 5602cb23db2bb72d38f0d53e6d4b0fff66dd57f5..c935c662f03365e1eb3d2b27dc7709b16260e462 100644 (file)
--- a/schema/human_9606_schema/human_9606_index.sql
+++ b/schema/human_9606_schema/human_9606_index.sql
@@ -1,45 +1,37 @@
 
 

- CREATE  INDEX [i_tax_id] ON [Batch]([tax_id])
+CREATE NONCLUSTERED INDEX [i_tax_id] ON [Batch] ([tax_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_submitted_time] ON [Batch]([submitted_time])
+CREATE NONCLUSTERED INDEX [i_submitted_time] ON [Batch] ([submitted_time] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_handle_loc_batch_id] ON [Batch]([handle], [loc_batch_id])
+CREATE NONCLUSTERED INDEX [i_handle_loc_batch_id] ON [Batch] ([handle] ASC,[loc_batch_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_pop_id] ON [Batch]([pop_id])
+CREATE NONCLUSTERED INDEX [i_pop_id] ON [Batch] ([pop_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_success_rate_int] ON [Batch]([success_rate_int])
+CREATE NONCLUSTERED INDEX [i_success_rate_int] ON [Batch] ([success_rate_int] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_method_id] ON [Batch]([method_id])
+CREATE NONCLUSTERED INDEX [i_method_id] ON [Batch] ([method_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_lbid_u] ON [Batch]([loc_batch_id_upp])
+CREATE NONCLUSTERED INDEX [i_lbid_u] ON [Batch] ([loc_batch_id_upp] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_last_updated] ON [Batch]([last_updated_time])
+CREATE NONCLUSTERED INDEX [i_last_updated] ON [Batch] ([last_updated_time] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_pub_id] ON [BatchCita]([pub_id])
+CREATE NONCLUSTERED INDEX [i_pub_id] ON [BatchCita] ([pub_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_BatchCultivar2] ON [BatchCultivar]([line])
+CREATE NONCLUSTERED INDEX [i_BatchCultivar2] ON [BatchCultivar] ([line] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_strain] ON [BatchStrain]([line])
+CREATE NONCLUSTERED INDEX [i_strain] ON [BatchStrain] ([line] ASC)\r

 GO
 
 
 
 
 GO
 
 
 
 

+CREATE CLUSTERED INDEX [t_hwp_chisq] ON [FreqSummaryBySsPop] ([subsnp_id] ASC,[pop_id] ASC)\r
+GO

 
 
 
 
 
 


@@ -48,236 +40,200 @@ GO
 
 
 
 
 
 

- CREATE  UNIQUE  INDEX [i_curator_ped_id] ON [Pedigree]([curator], [curator_ped_id])
+CREATE NONCLUSTERED INDEX [i_curator_ped_id] ON [Pedigree] ([curator] ASC,[curator_ped_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  INDEX [i_ind_ped] ON [PedigreeIndividual]([ind_id], [ped_id])
+CREATE NONCLUSTERED INDEX [i_ind_ped] ON [PedigreeIndividual] ([ind_id] ASC,[ped_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_pid_line_num] ON [PopMandLine]([pop_id], [line_num])
+CREATE CLUSTERED INDEX [i_pid_line_num] ON [PopMandLine] ([pop_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  INDEX [i_handle_loc_pop_id_upp] ON [Population]([handle], [loc_pop_id_upp])
+CREATE NONCLUSTERED INDEX [i_handle_loc_pop_id_upp] ON [Population] ([handle] ASC,[loc_pop_id_upp] ASC)\r

 GO
 GO

-
- CREATE  UNIQUE  INDEX [i_handle_loc_pop_id] ON [Population]([handle], [loc_pop_id])
+CREATE NONCLUSTERED INDEX [i_handle_loc_pop_id] ON [Population] ([handle] ASC,[loc_pop_id] ASC)\r

 GO
 
 GO
 

-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_rs] ON [SNP]([snp_id])
+CREATE CLUSTERED INDEX [i_rsL] ON [RsMergeArch] ([rsLow] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_exemplarSs] ON [SNP]([exemplar_subsnp_id], [snp_id])
+CREATE NONCLUSTERED INDEX [i_rsH] ON [RsMergeArch] ([rsHigh] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_rs] ON [SNP3D]([snp_id])
+CREATE CLUSTERED INDEX [i_rs] ON [SNP] ([snp_id] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_exemplarSs] ON [SNP] ([exemplar_subsnp_id] ASC,[snp_id] ASC)\r

 GO
 
 GO
 

+CREATE NONCLUSTERED INDEX [i_rs] ON [SNP3D] ([snp_id] ASC)\r
+GO

 
 
 
 
 
 
 
 
 
 

- CREATE  INDEX [i_hist_time] ON [SNPHistory]([history_create_time])
-GO
-

 
 
 
 

- CREATE  UNIQUE  CLUSTERED  INDEX [i_ss] ON [SNPSubSNPLink]([subsnp_id])
+CREATE NONCLUSTERED INDEX [i_hist_time] ON [SNPHistory] ([history_create_time] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_rs] ON [SNPSubSNPLink]([snp_id], [subsnp_id], [substrand_reversed_flag])
+CREATE CLUSTERED INDEX [i_rs_ss_pmid] ON [SNPPubmed] ([snp_id] ASC,[subsnp_id] ASC,[pubmed_id] ASC,[type] ASC)\r

 GO
 
 GO
 

-
- CREATE  CLUSTERED  INDEX [i_snp_id] ON [SNPSubSNPLinkHistory]([snp_id])
+CREATE CLUSTERED INDEX [i_ss] ON [SNPSubSNPLink] ([subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  UNIQUE  INDEX [i_ss_rs] ON [SNPSubSNPLinkHistory]([subsnp_id], [snp_id])
+CREATE NONCLUSTERED INDEX [i_rs] ON [SNPSubSNPLink] ([snp_id] ASC,[subsnp_id] ASC,[substrand_reversed_flag] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_build_id] ON [SNPSubSNPLinkHistory]([build_id])
+CREATE CLUSTERED INDEX [i_snp_id] ON [SNPSubSNPLinkHistory] ([snp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_build_id_when_history_made] ON [SNPSubSNPLinkHistory]([build_id_when_history_made])
+CREATE NONCLUSTERED INDEX [i_ss_rs] ON [SNPSubSNPLinkHistory] ([subsnp_id] ASC,[snp_id] ASC)\r

 GO
 GO

-
-
- CREATE  INDEX [i_rs] ON [SNPVal]([snp_id])
+CREATE NONCLUSTERED INDEX [i_build_id] ON [SNPSubSNPLinkHistory] ([build_id] ASC)\r

 GO
 GO

-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_rs_hgvs] ON [SNP_HGVS]([snp_id], [hgvs_name])
+CREATE NONCLUSTERED INDEX [i_build_id_when_history_made] ON [SNPSubSNPLinkHistory] ([build_id_when_history_made] ASC)\r

 GO
 
 
 GO
 
 

- CREATE  INDEX [i_link_prop_b2] ON [SNP_bitfield]([link_prop_b2])
+CREATE NONCLUSTERED INDEX [i_rs] ON [SNPVal] ([snp_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_ss] ON [SubPop]([subsnp_id])
+CREATE CLUSTERED INDEX [i_rs_h] ON [SNP_HGVS] ([snp_id] ASC,[hgvs_name] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_pop_ss] ON [SubPop]([pop_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_link_prop_b2] ON [SNP_bitfield] ([link_prop_b2] ASC,[snp_id] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_subpop_id] ON [SubPop]([subpop_id])
+CREATE NONCLUSTERED INDEX [i_ss] ON [SubPop] ([subsnp_id] ASC)\r

 GO
 GO

-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [iuc_SubPopAllele] ON [SubPopAllele]([batch_id], [pop_id], [subsnp_id], [type], [allele], [other])
+CREATE NONCLUSTERED INDEX [i_pop_ss] ON [SubPop] ([pop_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [iSubPopAllele1] ON [SubPopAllele]([freq])
+CREATE NONCLUSTERED INDEX [i_subpop_id] ON [SubPop] ([subpop_id] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [iSubPopAllele2] ON [SubPopAllele]([freq_max])
+CREATE CLUSTERED INDEX [iuc_SubPopAllele] ON [SubPopAllele] ([batch_id] ASC,[subsnp_id] ASC,[pop_id] ASC,[allele] ASC,[other] ASC,[type] ASC)\r

 GO
 GO

-
- CREATE  INDEX [iSubPopAllele3] ON [SubPopAllele]([freq_min])
+CREATE NONCLUSTERED INDEX [iSubPopAllele1] ON [SubPopAllele] ([freq] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_subsnp_id] ON [SubPopAllele]([subsnp_id])
+CREATE NONCLUSTERED INDEX [iSubPopAllele2] ON [SubPopAllele] ([freq_max] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_type] ON [SubPopAllele]([type])
+CREATE NONCLUSTERED INDEX [iSubPopAllele3] ON [SubPopAllele] ([freq_min] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_last_updated_time] ON [SubPopAllele]([last_updated_time])
+CREATE NONCLUSTERED INDEX [i_subsnp_id] ON [SubPopAllele] ([subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_allele_id] ON [SubPopAllele]([allele_id])
+CREATE NONCLUSTERED INDEX [i_type] ON [SubPopAllele] ([type] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_subpop_id] ON [SubPopAllele]([subpop_id])
+CREATE NONCLUSTERED INDEX [i_last_updated_time] ON [SubPopAllele] ([last_updated_time] ASC)\r

 GO
 GO

-
- CREATE  UNIQUE  INDEX [i_sp_ale] ON [SubPopAllele]([subpop_id], [type], [allele], [other])
+CREATE NONCLUSTERED INDEX [i_allele_id] ON [SubPopAllele] ([allele_id] ASC)\r

 GO
 GO

-
-
- CREATE  INDEX [i_subpop_id] ON [SubPopGty]([subpop_id])
+CREATE NONCLUSTERED INDEX [i_subpop_id] ON [SubPopAllele] ([subpop_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_gty_id] ON [SubPopGty]([gty_id])
+CREATE NONCLUSTERED INDEX [i_sp_ale] ON [SubPopAllele] ([subpop_id] ASC,[type] ASC,[allele] ASC,[other] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_loc_snp] ON [SubSNP]([loc_snp_id_upp], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_subpop_id] ON [SubPopGty] ([subpop_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_bid_ss] ON [SubSNP]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_gty_id] ON [SubPopGty] ([gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_acc_part_ind] ON [SubSNPAcc_ins]([acc_part], [acc_type_ind], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_loc_snp] ON [SubSNP] ([loc_snp_id_upp] ASC,[subsnp_id] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_bid_ss] ON [SubSNP] ([batch_id] ASC,[subsnp_id] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_var] ON [SubSNP] ([variation_id] ASC,[subsnp_id] ASC)\r

 GO
 
 GO
 

+CREATE NONCLUSTERED INDEX [i_acc_part_ind] ON [SubSNPAcc_ins] ([acc_part] ASC,[acc_type_ind] ASC,[subsnp_id] ASC)\r
+GO

 
 
 
 
 
 
 
 

- CREATE  INDEX [i_subsnp_id] ON [SubSNPMdFailLn]([subsnp_id])
+CREATE NONCLUSTERED INDEX [i_subsnp_id] ON [SubSNPMdFailLn] ([subsnp_id] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
- CREATE  INDEX [i_pmid] ON [SubSNPPubmed]([pubmed_id])
+CREATE NONCLUSTERED INDEX [i_pmid] ON [SubSNPPubmed] ([pubmed_id] ASC)\r

 GO
 
 
 
 
 
 GO
 
 
 
 
 

-
- CREATE  UNIQUE  INDEX [i_submitted_ind_id] ON [SubmittedIndividual]([submitted_ind_id])
+CREATE NONCLUSTERED INDEX [i_submitted_ind_id] ON [SubmittedIndividual] ([submitted_ind_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind] ON [SubmittedIndividual]([ind_id])
+CREATE NONCLUSTERED INDEX [i_ind] ON [SubmittedIndividual] ([ind_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  UNIQUE  INDEX [idxContigName] ON [b132_ContigInfo_37_1]([contig_name])
+CREATE NONCLUSTERED INDEX [i_asm] ON [b135_ContigInfo_37_3] ([asm_acc] ASC,[asm_version] ASC,[contig_start] ASC,[contig_end] ASC,[chr_gi] ASC)\r

 GO
 GO

-
- CREATE  INDEX [idxContigLabel] ON [b132_ContigInfo_37_1]([contig_label])
+CREATE NONCLUSTERED INDEX [i_asm_chr_ctg] ON [b135_ContigInfo_37_3] ([asm_acc] ASC,[asm_version] ASC,[chr_gi] ASC,[contig_start] ASC,[contig_end] ASC)\r

 GO
 GO

-
- CREATE  INDEX [idxGroupTerm] ON [b132_ContigInfo_37_1]([group_term])
+CREATE NONCLUSTERED INDEX [idxContigLabel] ON [b135_ContigInfo_37_3] ([contig_label] ASC)\r

 GO
 GO

-
- CREATE  UNIQUE  INDEX [idxCtgGi] ON [b132_ContigInfo_37_1]([contig_gi])
+CREATE NONCLUSTERED INDEX [ndx_ContigInfo_pc_37_3] ON [b135_ContigInfo_37_3] ([placement_status] ASC,[ctg_id] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [idxContigId] ON [b132_ContigInfo_37_1]([ctg_id])
-GO

 
 

- CREATE  INDEX [idxContigNameAcc] ON [b132_ContigInfo_37_1]([contig_name], [contig_acc])
+CREATE CLUSTERED INDEX [i_gi] ON [b135_MapLinkInfo_37_3] ([gi] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_order_assem_132] ON [b132_GenomeAssemblyInfo_37_1]([rep_order], [assembly])
+CREATE CLUSTERED INDEX [i_rs_gi_pos] ON [b135_MapLink_37_3] ([snp_id] ASC,[gi] ASC,[offset] ASC)\r

 GO
 GO

-
-
- CREATE  INDEX [idxGi] ON [b132_MapLinkInfo_37_1]([gi])
+CREATE NONCLUSTERED INDEX [i_src] ON [b135_MapLink_37_3] ([source] ASC,[snp_type] ASC,[snp_id] ASC,[gi] ASC,[offset] ASC,[asn_to] ASC)\r

 GO
 
 GO
 

-
- CREATE  CLUSTERED  INDEX [i_rs_gi_pos] ON [b132_MapLink_37_1]([snp_id], [gi])
+CREATE CLUSTERED INDEX [i_gi] ON [b135_ProteinInfo_37_3] ([gi] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [idxSnpLoc] ON [b132_MapLink_37_1]([gi], [offset], [asn_to])
+CREATE CLUSTERED INDEX [i_rs_pos] ON [b135_Remapped_37_3] ([snp_id] ASC,[src_gi] ASC,[src_from] ASC,[tgt_gi] ASC)\r

 GO
 GO

-
-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_rs] ON [b132_SNPChrPosOnRef_37_1]([snp_id])
+CREATE NONCLUSTERED INDEX [i_tgt_gi] ON [b135_Remapped_37_3] ([tgt_gi] ASC,[snp_type] ASC,[snp_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_rs] ON [b132_SNPContigLoc_37_1]([snp_id], [ctg_id], [asn_from])
+CREATE CLUSTERED INDEX [i_rs] ON [b135_SNPChrPosOnRef_37_3] ([snp_id] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_ctgPos] ON [b132_SNPContigLoc_37_1]([ctg_id], [asn_from])
+CREATE CLUSTERED INDEX [i_rs] ON [b135_SNPContigLoc_37_3] ([snp_id] ASC,[ctg_id] ASC,[asn_from] ASC)\r

 GO
 GO

-
- CREATE  INDEX [idxSnpId] ON [b132_SNPContigLoc_37_1]([snp_type], [snp_id])
+CREATE NONCLUSTERED INDEX [i_ctg] ON [b135_SNPContigLoc_37_3] ([ctg_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [iCtgSnp] ON [b132_SNPContigLoc_37_1]([ctg_id], [snp_id])
+CREATE NONCLUSTERED INDEX [i_snp] ON [b135_SNPContigLoc_37_3] ([snp_type] ASC,[snp_id] ASC)\r

 GO
 GO

-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_rsCtgMrna] ON [b132_SNPContigLocusId_37_1]([locus_id], [contig_acc], [mrna_gi], [snp_id], [asn_from], [allele], [mrna_start])
+CREATE NONCLUSTERED INDEX [idxAsnFrom] ON [b135_SNPContigLoc_37_3] ([asn_from] ASC)\r

 GO
 
 GO
 

- CREATE  INDEX [i_rs] ON [b132_SNPContigLocusId_37_1]([snp_id])
+CREATE CLUSTERED INDEX [i_rsCtgMrna] ON [b135_SNPContigLocusId_37_3] ([snp_id] ASC,[contig_acc] ASC,[asn_from] ASC,[locus_id] ASC,[allele] ASC,[mrna_start] ASC,[mrna_gi] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_rs] ON [b135_SNPContigLocusId_37_3] ([snp_id] ASC)\r

 GO
 
 GO
 

+CREATE CLUSTERED INDEX [i_rs_gi] ON [b135_SNPContigProtein_37_3] ([snp_id] ASC,[contig_gi] ASC,[contig_start] ASC)\r
+GO

 
 

- CREATE  UNIQUE  CLUSTERED  INDEX [i_rs] ON [b132_SNPMapInfo_37_1]([snp_id], [assembly])
+CREATE CLUSTERED INDEX [i_rs_asm] ON [b135_SNPMapInfo_37_3] ([snp_id] ASC,[asm_acc] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_asm] ON [b135_SNPMapInfo_37_3] ([asm_acc] ASC,[asm_version] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [iuc_rs_assembly_37_3] ON [b135_SNPMapInfo_37_3] ([asm_acc] ASC,[weight] ASC,[snp_id] ASC)\r

 GO
 
 GO
 

+CREATE CLUSTERED INDEX [i_rs_pos] ON [b135_SNPMapLinkProtein_37_3] ([snp_id] ASC,[mrna_gi] ASC,[mrna_start] ASC,[mrna_stop] ASC)\r
+GO
+CREATE NONCLUSTERED INDEX [i_ctg] ON [b135_SNPMapLinkProtein_37_3] ([ctg_gi] ASC,[mrna_gi] ASC,[snp_id] ASC)\r
+GO

 
 
 
 

- CREATE  CLUSTERED  INDEX [i_pid] ON [dn_IND_batch_pop]([pop_id])
+CREATE CLUSTERED INDEX [i_pid] ON [dn_IND_batch_pop] ([pop_id] ASC)\r

 GO
 
 
 
 
 
 GO
 
 
 
 
 

-
- CREATE  CLUSTERED  INDEX [i_b_size] ON [dn_table_rowcount]([build_id] DESC , [reserved_KB_spaceused] DESC )
+CREATE CLUSTERED INDEX [i_b_size] ON [dn_table_rowcount] ([build_id] DESC,[reserved_KB_spaceused] DESC)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/human_9606_index_postgresql.sql b/schema/human_9606_schema/human_9606_index_postgresql.sql
index 0c7f146127d89c78ece91dd03b57a8f71ce14b56..2dd804a00e298aa74ee9bfbf92693d88c1dd2daa 100644 (file)
--- a/schema/human_9606_schema/human_9606_index_postgresql.sql
+++ b/schema/human_9606_schema/human_9606_index_postgresql.sql
@@ -1,212 +1,82 @@
 
 

- CREATE  INDEX ON Batch(tax_id)
-;
- CREATE  INDEX ON Batch(submitted_time)
-;
- CREATE  INDEX ON Batch(handle, loc_batch_id)
-;
- CREATE  INDEX ON Batch(pop_id)
-;
- CREATE  INDEX ON Batch(success_rate_int)
-;
- CREATE  INDEX ON Batch(method_id)
-;
- CREATE  INDEX ON Batch(loc_batch_id_upp)
-;
- CREATE  INDEX ON Batch(last_updated_time)
-;
-
- CREATE  INDEX ON BatchCita(pub_id)
-;
-
-
- CREATE  INDEX ON BatchCultivar(line)
-;
-
-
- CREATE  INDEX ON BatchStrain(line)
-;
-
-
-
-
-
-
-
-
-
-
-
- CREATE  UNIQUE  INDEX ON Pedigree(curator, curator_ped_id)
-;
-
- CREATE  UNIQUE  INDEX ON PedigreeIndividual(ind_id, ped_id)
-;
-
-
- CREATE  UNIQUE    INDEX ON PopMandLine(pop_id, line_num)
-;
-
- CREATE  UNIQUE  INDEX ON Population(handle, loc_pop_id_upp)
-;
- CREATE  UNIQUE  INDEX ON Population(handle, loc_pop_id)
-;
-
-
- CREATE  UNIQUE    INDEX ON SNP(snp_id)
-;
- CREATE  INDEX ON SNP(exemplar_subsnp_id, snp_id)
-;
-
- CREATE  INDEX ON SNP3D(snp_id)
-;
-
-
-
-
-
- CREATE  INDEX ON SNPHistory(history_create_time)
-;
-
-
- CREATE  UNIQUE    INDEX ON SNPSubSNPLink(subsnp_id)
-;
- CREATE  INDEX ON SNPSubSNPLink(snp_id, subsnp_id, substrand_reversed_flag)
-;
-
- CREATE    INDEX ON SNPSubSNPLinkHistory(snp_id)
-;
- CREATE  UNIQUE  INDEX ON SNPSubSNPLinkHistory(subsnp_id, snp_id)
-;
- CREATE  INDEX ON SNPSubSNPLinkHistory(build_id)
-;
- CREATE  INDEX ON SNPSubSNPLinkHistory(build_id_when_history_made)
-;
-
- CREATE  INDEX ON SNPVal(snp_id)
-;
-
- CREATE  UNIQUE    INDEX ON SNP_HGVS(snp_id, hgvs_name)
-;
-
- CREATE  INDEX ON SNP_bitfield(link_prop_b2)
-;
-
- CREATE  INDEX ON SubPop(subsnp_id)
-;
- CREATE  INDEX ON SubPop(pop_id, subsnp_id)
-;
- CREATE  INDEX ON SubPop(subpop_id)
-;
-
- CREATE  UNIQUE    INDEX ON SubPopAllele(batch_id, pop_id, subsnp_id, type, allele, other)
-;
- CREATE  INDEX ON SubPopAllele(freq)
-;
- CREATE  INDEX ON SubPopAllele(freq_max)
-;
- CREATE  INDEX ON SubPopAllele(freq_min)
-;
- CREATE  INDEX ON SubPopAllele(subsnp_id)
-;
- CREATE  INDEX ON SubPopAllele(type)
-;
- CREATE  INDEX ON SubPopAllele(last_updated_time)
-;
- CREATE  INDEX ON SubPopAllele(allele_id)
-;
- CREATE  INDEX ON SubPopAllele(subpop_id)
-;
- CREATE  UNIQUE  INDEX ON SubPopAllele(subpop_id, type, allele, other)
-;
-
- CREATE  INDEX ON SubPopGty(subpop_id)
-;
- CREATE  INDEX ON SubPopGty(gty_id)
-;
-
- CREATE  INDEX ON SubSNP(loc_snp_id_upp, subsnp_id)
-;
- CREATE  INDEX ON SubSNP(batch_id, subsnp_id)
-;
-
- CREATE  INDEX ON SubSNPAcc_ins(acc_part, acc_type_ind, subsnp_id)
-;
-
-
-
-
- CREATE  INDEX ON SubSNPMdFailLn(subsnp_id)
-;
-
-
-
- CREATE  INDEX ON SubSNPPubmed(pubmed_id)
-;
-
-
-
-
-
- CREATE  UNIQUE  INDEX ON SubmittedIndividual(submitted_ind_id)
-;
- CREATE  INDEX ON SubmittedIndividual(ind_id)
-;
-
-
- CREATE  UNIQUE  INDEX ON b132_ContigInfo_37_1(contig_name)
-;
- CREATE  INDEX ON b132_ContigInfo_37_1(contig_label)
-;
- CREATE  INDEX ON b132_ContigInfo_37_1(group_term)
-;
- CREATE  UNIQUE  INDEX ON b132_ContigInfo_37_1(contig_gi)
-;
- CREATE  INDEX ON b132_ContigInfo_37_1(ctg_id)
-;
- CREATE  INDEX ON b132_ContigInfo_37_1(contig_name, contig_acc)
-;
-
- CREATE  INDEX ON b132_GenomeAssemblyInfo_37_1(rep_order, assembly)
-;
-
- CREATE  INDEX ON b132_MapLinkInfo_37_1(gi)
-;
-
- CREATE    INDEX ON b132_MapLink_37_1(snp_id, gi)
-;
- CREATE  INDEX ON b132_MapLink_37_1(gi, "offset", asn_to)
-;
-
-
- CREATE  UNIQUE    INDEX ON b132_SNPChrPosOnRef_37_1(snp_id)
-;
-
- CREATE  UNIQUE    INDEX ON b132_SNPContigLoc_37_1(snp_id, ctg_id, asn_from)
-;
- CREATE  INDEX ON b132_SNPContigLoc_37_1(ctg_id, asn_from)
-;
- CREATE  INDEX ON b132_SNPContigLoc_37_1(snp_type, snp_id)
-;
- CREATE  INDEX ON b132_SNPContigLoc_37_1(ctg_id, snp_id)
-;
-
- CREATE  UNIQUE    INDEX ON b132_SNPContigLocusId_37_1(locus_id, contig_acc, mrna_gi, snp_id, asn_from, allele, mrna_start)
-;
- CREATE  INDEX ON b132_SNPContigLocusId_37_1(snp_id)
-;
-
- CREATE  UNIQUE    INDEX ON b132_SNPMapInfo_37_1(snp_id, assembly)
-;
-
-
- CREATE    INDEX ON dn_IND_batch_pop(pop_id)
-;
-
-
-
-
-
- CREATE    INDEX ON dn_table_rowcount(build_id DESC , reserved_KB_spaceused DESC )
-;
-
+CREATE INDEX ON Batch (tax_id);
+CREATE INDEX ON Batch (submitted_time);
+CREATE INDEX ON Batch (handle,loc_batch_id);
+CREATE INDEX ON Batch (pop_id);
+CREATE INDEX ON Batch (success_rate_int);
+CREATE INDEX ON Batch (method_id);
+CREATE INDEX ON Batch (loc_batch_id_upp);
+CREATE INDEX ON Batch (last_updated_time);
+CREATE INDEX ON BatchCita (pub_id);
+CREATE INDEX ON BatchCultivar (line);
+CREATE INDEX ON BatchStrain (line);
+CREATE INDEX ON FreqSummaryBySsPop (subsnp_id,pop_id);
+CREATE INDEX ON Pedigree (curator,curator_ped_id);
+CREATE INDEX ON PedigreeIndividual (ind_id,ped_id);
+CREATE INDEX ON PopMandLine (pop_id,line_num);
+CREATE INDEX ON Population (handle,loc_pop_id_upp);
+CREATE INDEX ON Population (handle,loc_pop_id);
+CREATE INDEX ON RsMergeArch (rsLow);
+CREATE INDEX ON RsMergeArch (rsHigh);
+CREATE INDEX ON SNP (snp_id);
+CREATE INDEX ON SNP (exemplar_subsnp_id,snp_id);
+CREATE INDEX ON SNP3D (snp_id);
+CREATE INDEX ON SNPHistory (history_create_time);
+CREATE INDEX ON SNPPubmed (snp_id,subsnp_id,pubmed_id,type);
+CREATE INDEX ON SNPSubSNPLink (subsnp_id);
+CREATE INDEX ON SNPSubSNPLink (snp_id,subsnp_id,substrand_reversed_flag);
+CREATE INDEX ON SNPSubSNPLinkHistory (snp_id);
+CREATE INDEX ON SNPSubSNPLinkHistory (subsnp_id,snp_id);
+CREATE INDEX ON SNPSubSNPLinkHistory (build_id);
+CREATE INDEX ON SNPSubSNPLinkHistory (build_id_when_history_made);
+CREATE INDEX ON SNPVal (snp_id);
+CREATE INDEX ON SNP_HGVS (snp_id,hgvs_name);
+CREATE INDEX ON SNP_bitfield (link_prop_b2,snp_id);
+CREATE INDEX ON SubPop (subsnp_id);
+CREATE INDEX ON SubPop (pop_id,subsnp_id);
+CREATE INDEX ON SubPop (subpop_id);
+CREATE INDEX ON SubPopAllele (batch_id,subsnp_id,pop_id,allele,other,type);
+CREATE INDEX ON SubPopAllele (freq);
+CREATE INDEX ON SubPopAllele (freq_max);
+CREATE INDEX ON SubPopAllele (freq_min);
+CREATE INDEX ON SubPopAllele (subsnp_id);
+CREATE INDEX ON SubPopAllele (type);
+CREATE INDEX ON SubPopAllele (last_updated_time);
+CREATE INDEX ON SubPopAllele (allele_id);
+CREATE INDEX ON SubPopAllele (subpop_id);
+CREATE INDEX ON SubPopAllele (subpop_id,type,allele,other);
+CREATE INDEX ON SubPopGty (subpop_id);
+CREATE INDEX ON SubPopGty (gty_id);
+CREATE INDEX ON SubSNP (loc_snp_id_upp,subsnp_id);
+CREATE INDEX ON SubSNP (batch_id,subsnp_id);
+CREATE INDEX ON SubSNP (variation_id,subsnp_id);
+CREATE INDEX ON SubSNPAcc_ins (acc_part,acc_type_ind,subsnp_id);
+CREATE INDEX ON SubSNPMdFailLn (subsnp_id);
+CREATE INDEX ON SubSNPPubmed (pubmed_id);
+CREATE INDEX ON SubmittedIndividual (submitted_ind_id);
+CREATE INDEX ON SubmittedIndividual (ind_id);
+CREATE INDEX ON b135_ContigInfo_37_3 (asm_acc,asm_version,contig_start,contig_end,chr_gi);
+CREATE INDEX ON b135_ContigInfo_37_3 (asm_acc,asm_version,chr_gi,contig_start,contig_end);
+CREATE INDEX ON b135_ContigInfo_37_3 (contig_label);
+CREATE INDEX ON b135_ContigInfo_37_3 (placement_status,ctg_id);
+CREATE INDEX ON b135_MapLinkInfo_37_3 (gi);
+CREATE INDEX ON b135_MapLink_37_3 (snp_id,gi,offset);
+CREATE INDEX ON b135_MapLink_37_3 (source,snp_type,snp_id,gi,offset,asn_to);
+CREATE INDEX ON b135_ProteinInfo_37_3 (gi);
+CREATE INDEX ON b135_Remapped_37_3 (snp_id,src_gi,src_from,tgt_gi);
+CREATE INDEX ON b135_Remapped_37_3 (tgt_gi,snp_type,snp_id);
+CREATE INDEX ON b135_SNPChrPosOnRef_37_3 (snp_id);
+CREATE INDEX ON b135_SNPContigLoc_37_3 (snp_id,ctg_id,asn_from);
+CREATE INDEX ON b135_SNPContigLoc_37_3 (ctg_id);
+CREATE INDEX ON b135_SNPContigLoc_37_3 (snp_type,snp_id);
+CREATE INDEX ON b135_SNPContigLoc_37_3 (asn_from);
+CREATE INDEX ON b135_SNPContigLocusId_37_3 (snp_id,contig_acc,asn_from,locus_id,allele,mrna_start,mrna_gi);
+CREATE INDEX ON b135_SNPContigLocusId_37_3 (snp_id);
+CREATE INDEX ON b135_SNPContigProtein_37_3 (snp_id,contig_gi,contig_start);
+CREATE INDEX ON b135_SNPMapInfo_37_3 (snp_id,asm_acc);
+CREATE INDEX ON b135_SNPMapInfo_37_3 (asm_acc,asm_version);
+CREATE INDEX ON b135_SNPMapInfo_37_3 (asm_acc,weight,snp_id);
+CREATE INDEX ON b135_SNPMapLinkProtein_37_3 (snp_id,mrna_gi,mrna_start,mrna_stop);
+CREATE INDEX ON b135_SNPMapLinkProtein_37_3 (ctg_gi,mrna_gi,snp_id);
+CREATE INDEX ON dn_IND_batch_pop (pop_id);
+CREATE INDEX ON dn_table_rowcount (build_id DESC,reserved_KB_spaceused DESC);

diff --git a/schema/human_9606_schema/human_9606_table.sql b/schema/human_9606_schema/human_9606_table.sql
index 555e45c3e257d224bdef80e73708a886fc7b23d5..aa943dee97d69f20e68e9c5c3d39f3279cf54c52 100644 (file)
--- a/schema/human_9606_schema/human_9606_table.sql
+++ b/schema/human_9606_schema/human_9606_table.sql
@@ -1,896 +1,1075 @@
-CREATE TABLE [AlleleFreqBySsPop] (
-       [subsnp_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [allele_id] [int] NOT NULL ,
-       [source] [varchar] (2) NOT NULL ,
-       [cnt] [real] NULL ,
-       [freq] [real] NULL ,
-       [last_updated_time] [datetime] NOT NULL 
+CREATE TABLE [AlleleFreqBySsPop]
+(
+[subsnp_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[source] [varchar](2) NOT NULL ,
+[cnt] [real] NULL ,
+[freq] [real] NULL ,
+[last_updated_time] [datetime] NOT NULL

 )
 GO
 )
 GO

-
-
-CREATE TABLE [Batch] (
-       [batch_id] [int] NOT NULL ,
-       [handle] [varchar] (20) NOT NULL ,
-       [loc_batch_id] [varchar] (64) NOT NULL ,
-       [loc_batch_id_upp] [varchar] (64) NOT NULL ,
-       [batch_type] [char] (3) NOT NULL ,
-       [status] [tinyint] NULL ,
-       [simul_sts_status] [tinyint] NOT NULL ,
-       [moltype] [varchar] (8) NOT NULL ,
-       [method_id] [int] NOT NULL ,
-       [samplesize] [int] NULL ,
-       [synonym_type] [varchar] (255) NULL ,
-       [submitted_time] [smalldatetime] NOT NULL ,
-       [linkout_url] [varchar] (255) NULL ,
-       [pop_id] [int] NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [success_rate_int] [int] NULL ,
-       [build_id] [int] NULL ,
-       [tax_id] [int] NOT NULL ,
-       [ss_cnt] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchCita] (
-       [batch_id] [int] NOT NULL ,
-       [position] [int] NOT NULL ,
-       [pub_id] [int] NOT NULL ,
-       [citation] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchCommLine] (
-       [batch_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchCultivar] (
-       [batch_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchMeExLine] (
-       [batch_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchStrain] (
-       [batch_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [BatchValCode] (
-       [batch_id] [int] NOT NULL ,
-       [validation_status] [tinyint] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [Contact] (
-       [batch_id] [int] NOT NULL ,
-       [handle] [varchar] (20) NOT NULL ,
-       [name] [varchar] (255) NOT NULL ,
-       [fax] [varchar] (255) NULL ,
-       [phone] [varchar] (255) NULL ,
-       [email] [varchar] (255) NULL ,
-       [lab] [varchar] (255) NULL ,
-       [institution] [varchar] (255) NULL ,
-       [address] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [FreqSummaryBySsPop] (
-       [subsnp_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [source] [varchar] (1) NOT NULL ,
-       [chr_cnt] [int] NOT NULL ,
-       [ind_cnt] [int] NOT NULL ,
-       [non_founder_ind_cnt] [int] NOT NULL ,
-       [chisq] [real] NULL ,
-       [df] [tinyint] NULL ,
-       [hwp] [real] NULL ,
-       [het] [real] NULL ,
-       [het_se] [real] NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [GeneIdToName] (
-       [gene_id] [int] NOT NULL ,
-       [gene_symbol] [varchar] (64) NOT NULL ,
-       [gene_name] [varchar] (255) NULL ,
-       [gene_type] [varchar] (255) NULL ,
-       [tax_id] [int] NOT NULL ,
-       [last_update_time] [smalldatetime] NOT NULL ,
-       [ref_tax_id] [int] NOT NULL ,
-       [dbSNP_tax_id] [int] NOT NULL ,
-       [ins_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [GtyFreqBySsPop] (
-       [subsnp_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [unigty_id] [int] NOT NULL ,
-       [source] [varchar] (1) NULL ,
-       [cnt] [real] NULL ,
-       [freq] [real] NULL ,
-       [last_updated_time] [datetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [IndGrpCode] (
-       [code] [tinyint] NOT NULL ,
-       [name] [varchar] (32) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [IndivBySource] (
-       [ind_id] [int] NOT NULL ,
-       [src_id] [int] NOT NULL ,
-       [src_ind_id] [varchar] (64) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [src_ind_grp] [varchar] (64) NULL 
-)
-GO
-
-
-CREATE TABLE [IndivSourceCode] (
-       [code] [int] NOT NULL ,
-       [name] [varchar] (22) NOT NULL ,
-       [descrip] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [src_type] [varchar] (10) NULL ,
-       [display_order] [tinyint] NULL 
-)
-GO
-
-
-CREATE TABLE [Individual] (
-       [ind_id] [int] NOT NULL ,
-       [descrip] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [tax_id] [int] NULL ,
-       [ind_grp] [tinyint] NULL 
-)
-GO
-
-
-CREATE TABLE [OmimVarLocusIdSNP] (
-       [omim_id] [int] NOT NULL ,
-       [locus_id] [int] NULL ,
-       [omimvar_id] [char] (4) NULL ,
-       [locus_symbol] [char] (10) NULL ,
-       [var1] [char] (20) NULL ,
-       [aa_position] [int] NULL ,
-       [var2] [char] (20) NULL ,
-       [var_class] [int] NOT NULL ,
-       [snp_id] [int] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [Pedigree] (
-       [ped_id] [numeric](7, 0) NOT NULL ,
-       [curator] [varchar] (12) NOT NULL ,
-       [curator_ped_id] [varchar] (12) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [PedigreeIndividual] (
-       [ped_id] [decimal](7, 0) NOT NULL ,
-       [ind_id] [int] NOT NULL ,
-       [ma_ind_id] [int] NULL ,
-       [pa_ind_id] [int] NULL ,
-       [sex] [char] (1) NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [PopLine] (
-       [pop_id] [int] NOT NULL ,
-       [line_num] [int] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [PopMandLine] (
-       [pop_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [Population] (
-       [pop_id] [int] NOT NULL ,
-       [handle] [varchar] (20) NOT NULL ,
-       [loc_pop_id] [varchar] (64) NOT NULL ,
-       [loc_pop_id_upp] [varchar] (64) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [src_id] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [RsMergeArch] (
-       [rsHigh] [int] NULL ,
-       [rsLow] [int] NULL ,
-       [build_id] [int] NULL ,
-       [orien] [tinyint] NULL ,
-       [create_time] [datetime] NOT NULL ,
-       [last_updated_time] [datetime] NOT NULL ,
-       [rsCurrent] [int] NULL ,
-       [orien2Current] [tinyint] NULL ,
-       [comment] [varchar] (255) NULL 
-)
-GO
-
-
-CREATE TABLE [SNP] (
-       [snp_id] [int] NULL ,
-       [avg_heterozygosity] [real] NULL ,
-       [het_se] [real] NULL ,
-       [create_time] [datetime] NULL ,
-       [last_updated_time] [datetime] NULL ,
-       [CpG_code] [tinyint] NULL ,
-       [tax_id] [int] NULL ,
-       [validation_status] [tinyint] NULL ,
-       [exemplar_subsnp_id] [int] NULL ,
-       [univar_id] [int] NULL ,
-       [cnt_subsnp] [int] NULL ,
-       [map_property] [tinyint] NULL 
-)
-GO
-
-
-CREATE TABLE [SNP3D] (
-       [snp_id] [int] NOT NULL ,
-       [protein_acc] [char] (50) NOT NULL ,
-       [master_gi] [int] NOT NULL ,
-       [neighbor_gi] [int] NOT NULL ,
-       [aa_position] [int] NOT NULL ,
-       [var_res] [char] (1) NOT NULL ,
-       [contig_res] [char] (1) NOT NULL ,
-       [neighbor_res] [char] (1) NOT NULL ,
-       [neighbor_pos] [int] NOT NULL ,
-       [var_color] [int] NOT NULL ,
-       [var_label] [int] NOT NULL 
+
+CREATE TABLE [Batch]
+(
+[batch_id] [int] NOT NULL ,
+[handle] [varchar](20) NOT NULL ,
+[loc_batch_id] [varchar](64) NOT NULL ,
+[loc_batch_id_upp] [varchar](64) NOT NULL ,
+[batch_type] [char](3) NOT NULL ,
+[status] [tinyint] NULL ,
+[simul_sts_status] [tinyint] NOT NULL ,
+[moltype] [varchar](8) NOT NULL ,
+[method_id] [int] NOT NULL ,
+[samplesize] [int] NULL ,
+[synonym_type] [varchar](255) NULL ,
+[submitted_time] [smalldatetime] NOT NULL ,
+[linkout_url] [varchar](255) NULL ,
+[pop_id] [int] NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[success_rate_int] [int] NULL ,
+[build_id] [int] NULL ,
+[tax_id] [int] NOT NULL ,
+[ss_cnt] [int] NULL
+)
+GO
+
+CREATE TABLE [BatchCita]
+(
+[batch_id] [int] NOT NULL ,
+[position] [int] NOT NULL ,
+[pub_id] [int] NOT NULL ,
+[citation] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [BatchCommLine]
+(
+[batch_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [BatchCultivar]
+(
+[batch_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [BatchMeExLine]
+(
+[batch_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [BatchStrain]
+(
+[batch_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [BatchValCode]
+(
+[batch_id] [int] NOT NULL ,
+[validation_status] [tinyint] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPAlleleFreq] (
-       [snp_id] [int] NOT NULL ,
-       [allele_id] [int] NOT NULL ,
-       [chr_cnt] [float] NULL ,
-       [freq] [float] NULL ,
-       [last_updated_time] [datetime] NOT NULL 
+CREATE TABLE [ClinSigCode]
+(
+[code] [int] NOT NULL ,
+[abbrev] [varchar](64) NULL ,
+[descrip] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPAncestralAllele] (
-       [snp_id] [int] NOT NULL ,
-       [ancestral_allele_id] [int] NOT NULL ,
-       [batch_id] [int] NOT NULL 
+CREATE TABLE [Contact]
+(
+[batch_id] [int] NOT NULL ,
+[handle] [varchar](20) NOT NULL ,
+[name] [varchar](255) NOT NULL ,
+[fax] [varchar](255) NULL ,
+[phone] [varchar](255) NULL ,
+[email] [varchar](255) NULL ,
+[lab] [varchar](255) NULL ,
+[institution] [varchar](255) NULL ,
+[address] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPGtyFreq] (
-       [snp_id] [int] NOT NULL ,
-       [unigty_id] [int] NOT NULL ,
-       [ind_cnt] [float] NULL ,
-       [freq] [float] NULL ,
-       [last_updated_time] [datetime] NOT NULL 
+CREATE TABLE [FreqSummaryBySsPop]
+(
+[subsnp_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[source] [varchar](1) NOT NULL ,
+[chr_cnt] [float] NULL ,
+[ind_cnt] [float] NULL ,
+[non_founder_ind_cnt] [int] NOT NULL ,
+[chisq] [float] NULL ,
+[df] [int] NULL ,
+[hwp] [float] NOT NULL ,
+[het] [int] NULL ,
+[het_se] [int] NULL ,
+[last_updated_time] [datetime] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPHWProb] (
-       [snp_id] [int] NOT NULL ,
-       [df] [tinyint] NULL ,
-       [chisq] [real] NULL ,
-       [hwp] [real] NULL ,
-       [ind_cnt] [smallint] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
+CREATE TABLE [GeneIdToName]
+(
+[gene_id] [int] NOT NULL ,
+[gene_symbol] [varchar](64) NOT NULL ,
+[gene_name] [varchar](255) NULL ,
+[gene_type] [varchar](255) NULL ,
+[tax_id] [int] NOT NULL ,
+[last_update_time] [smalldatetime] NOT NULL ,
+[ref_tax_id] [int] NOT NULL ,
+[dbSNP_tax_id] [int] NOT NULL ,
+[ins_time] [smalldatetime] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPHistory] (
-       [snp_id] [int] NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [history_create_time] [smalldatetime] NULL ,
-       [comment] [varchar] (255) NULL 
+CREATE TABLE [GtyFreqBySsPop]
+(
+[subsnp_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[unigty_id] [int] NOT NULL ,
+[source] [varchar](1) NULL ,
+[cnt] [real] NULL ,
+[freq] [real] NULL ,
+[last_updated_time] [datetime] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPPubmed] (
-       [snp_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [pubmed_id] [int] NOT NULL ,
-       [type] [varchar] (16) NOT NULL ,
-       [score] [int] NOT NULL ,
-       [upd_date] [smalldatetime] NOT NULL 
+CREATE TABLE [IndGrpCode]
+(
+[code] [tinyint] NOT NULL ,
+[name] [varchar](32) NOT NULL ,
+[descrip] [varchar](255) NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPSubSNPLink] (
-       [subsnp_id] [int] NULL ,
-       [snp_id] [int] NULL ,
-       [substrand_reversed_flag] [tinyint] NULL ,
-       [create_time] [datetime] NULL ,
-       [last_updated_time] [datetime] NULL ,
-       [build_id] [int] NULL ,
-       [comment] [varchar] (255) NULL 
+CREATE TABLE [IndivBySource]
+(
+[ind_id] [int] NOT NULL ,
+[src_id] [int] NOT NULL ,
+[src_ind_id] [varchar](64) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[src_ind_grp] [varchar](64) NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPSubSNPLinkHistory] (
-       [subsnp_id] [int] NULL ,
-       [snp_id] [int] NULL ,
-       [build_id] [int] NULL ,
-       [history_create_time] [datetime] NOT NULL ,
-       [link_create_time] [datetime] NULL ,
-       [link_last_updated_time] [datetime] NULL ,
-       [orien] [tinyint] NULL ,
-       [build_id_when_history_made] [int] NULL ,
-       [comment] [varchar] (255) NULL 
+CREATE TABLE [IndivSourceCode]
+(
+[code] [int] NOT NULL ,
+[name] [varchar](22) NOT NULL ,
+[descrip] [varchar](255) NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[src_type] [varchar](10) NULL ,
+[display_order] [tinyint] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNPVal] (
-       [batch_id] [int] NOT NULL ,
-       [snp_id] [int] NOT NULL 
+CREATE TABLE [Individual]
+(
+[ind_id] [int] NOT NULL ,
+[descrip] [varchar](255) NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[tax_id] [int] NULL ,
+[ind_grp] [tinyint] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNP_HGVS] (
-       [snp_id] [int] NULL ,
-       [hgvs_name] [varchar] (256) NULL ,
-       [source] [varchar] (8) NOT NULL ,
-       [upd_time] [datetime] NOT NULL 
+CREATE TABLE [OmimVarLocusIdSNP]
+(
+[omim_id] [int] NOT NULL ,
+[locus_id] [int] NULL ,
+[omimvar_id] [char](4) NULL ,
+[locus_symbol] [char](10) NULL ,
+[var1] [char](20) NULL ,
+[aa_position] [int] NULL ,
+[var2] [char](20) NULL ,
+[var_class] [int] NOT NULL ,
+[snp_id] [int] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SNP_bitfield] (
-       [snp_id] [int] NOT NULL ,
-       [ver_code] [tinyint] NULL ,
-       [link_prop_b1] [tinyint] NULL ,
-       [link_prop_b2] [tinyint] NULL ,
-       [gene_prop_b1] [tinyint] NULL ,
-       [gene_prop_b2] [tinyint] NULL ,
-       [map_prop] [tinyint] NULL ,
-       [freq_prop] [tinyint] NULL ,
-       [gty_prop] [tinyint] NULL ,
-       [hapmap_prop] [tinyint] NULL ,
-       [pheno_prop] [tinyint] NULL ,
-       [variation_class] [tinyint] NOT NULL ,
-       [quality_check] [tinyint] NULL ,
-       [upd_time] [datetime] NOT NULL ,
-       [encoding] [binary] (12) NULL 
-)
+CREATE TABLE [Pedigree]
+(
+[ped_id] [numeric] NOT NULL ,
+[curator] [varchar](12) NOT NULL ,
+[curator_ped_id] [varchar](12) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)

 GO
 
 GO
 

-
-CREATE TABLE [SubPop] (
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [type] [char] (3) NOT NULL ,
-       [samplesize] [int] NOT NULL ,
-       [submitted_strand_code] [tinyint] NULL ,
-       [submitted_rs] [int] NULL ,
-       [allele_flag] [tinyint] NULL ,
-       [ambiguity_status] [tinyint] NULL ,
-       [sub_heterozygosity] [real] NULL ,
-       [est_heterozygosity] [real] NULL ,
-       [est_het_se_sq] [real] NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [observed] [varchar] (1000) NULL ,
-       [sub_het_se_sq] [real] NULL ,
-       [subpop_id] [int] IDENTITY (1, 1) NOT NULL 
+CREATE TABLE [PedigreeIndividual]
+(
+[ped_id] [decimal] NOT NULL ,
+[ind_id] [int] NOT NULL ,
+[ma_ind_id] [int] NULL ,
+[pa_ind_id] [int] NULL ,
+[sex] [char](1) NULL ,
+[create_time] [smalldatetime] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubPopAllele] (
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [allele] [char] (1) NOT NULL ,
-       [other] [varchar] (255) NULL ,
-       [freq] [real] NULL ,
-       [cnt_int] [int] NULL ,
-       [freq_min] [real] NULL ,
-       [freq_max] [real] NULL ,
-       [data_src] [varchar] (6) NULL ,
-       [type] [char] (3) NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [allele_flag] [tinyint] NULL ,
-       [cnt] [real] NULL ,
-       [allele_id] [int] NULL ,
-       [subpop_id] [int] NOT NULL 
+CREATE TABLE [PopLine]
+(
+[pop_id] [int] NOT NULL ,
+[line_num] [int] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubPopGty] (
-       [subpop_id] [int] NOT NULL ,
-       [gty_id] [int] NOT NULL ,
-       [gty_str] [varchar] (255) NULL ,
-       [cnt] [real] NULL ,
-       [freq] [real] NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
+CREATE TABLE [PopMandLine]
+(
+[pop_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNP] (
-       [subsnp_id] [int] NOT NULL ,
-       [known_snp_handle] [varchar] (20) NULL ,
-       [known_snp_loc_id] [varchar] (64) NULL ,
-       [known_snp_loc_id_upp] [varchar] (64) NULL ,
-       [batch_id] [int] NOT NULL ,
-       [loc_snp_id] [varchar] (64) NULL ,
-       [loc_snp_id_upp] [varchar] (64) NULL ,
-       [synonym_names] [varchar] (255) NULL ,
-       [loc_sts_id] [varchar] (64) NULL ,
-       [loc_sts_id_upp] [varchar] (64) NULL ,
-       [segregate] [char] (1) NOT NULL ,
-       [indiv_homozygosity_detected] [char] (1) NULL ,
-       [PCR_confirmed_ind] [char] (1) NULL ,
-       [gene_name] [varchar] (64) NULL ,
-       [sequence_len] [int] NULL ,
-       [samplesize] [int] NULL ,
-       [EXPRESSED_SEQUENCE_ind] [char] (1) NULL ,
-       [SOMATIC_ind] [char] (1) NULL ,
-       [sub_locus_id] [int] NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [ancestral_allele] [varchar] (255) NULL ,
-       [CpG_code] [tinyint] NULL ,
-       [variation_id] [int] NULL ,
-       [top_or_bot_strand] [char] (1) NULL ,
-       [validation_status] [tinyint] NULL ,
-       [snp_id] [int] NULL ,
-       [tax_id] [int] NOT NULL ,
-       [chr_id] [tinyint] NULL 
+CREATE TABLE [Population]
+(
+[pop_id] [int] NOT NULL ,
+[handle] [varchar](20) NOT NULL ,
+[loc_pop_id] [varchar](64) NOT NULL ,
+[loc_pop_id_upp] [varchar](64) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[src_id] [int] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPAcc_ins] (
-       [subsnp_id] [int] NOT NULL ,
-       [acc_type_ind] [char] (1) NOT NULL ,
-       [acc_part] [varchar] (16) NOT NULL ,
-       [acc_ver] [int] NULL 
+CREATE TABLE [RsMergeArch]
+(
+[rsHigh] [int] NULL ,
+[rsLow] [int] NULL ,
+[build_id] [int] NULL ,
+[orien] [tinyint] NULL ,
+[create_time] [datetime] NOT NULL ,
+[last_updated_time] [datetime] NOT NULL ,
+[rsCurrent] [int] NULL ,
+[orien2Current] [tinyint] NULL ,
+[comment] [varchar](255) NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPCommLine_ins] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
+CREATE TABLE [SNP]
+(
+[snp_id] [int] NULL ,
+[avg_heterozygosity] [real] NULL ,
+[het_se] [real] NULL ,
+[create_time] [datetime] NULL ,
+[last_updated_time] [datetime] NULL ,
+[CpG_code] [tinyint] NULL ,
+[tax_id] [int] NULL ,
+[validation_status] [tinyint] NULL ,
+[exemplar_subsnp_id] [int] NULL ,
+[univar_id] [int] NULL ,
+[cnt_subsnp] [int] NULL ,
+[map_property] [tinyint] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPHGVS] (
-       [subsnp_id] [int] NOT NULL ,
-       [sub_hgvs_c] [varchar] (32) NULL ,
-       [sub_hgvs_g] [varchar] (32) NULL ,
-       [sub_hgvs_p] [varchar] (32) NULL ,
-       [cal_hgvs_c] [varchar] (32) NULL ,
-       [cal_hgvs_g] [varchar] (32) NULL ,
-       [cal_hgvs_p] [varchar] (32) NULL ,
-       [upd_time] [smalldatetime] NULL ,
-       [gene_id] [int] NULL 
+CREATE TABLE [SNP3D]
+(
+[snp_id] [int] NOT NULL ,
+[protein_acc] [char](50) NOT NULL ,
+[master_gi] [int] NOT NULL ,
+[neighbor_gi] [int] NOT NULL ,
+[aa_position] [int] NOT NULL ,
+[var_res] [char](1) NOT NULL ,
+[contig_res] [char](1) NOT NULL ,
+[neighbor_res] [char](1) NOT NULL ,
+[neighbor_pos] [int] NOT NULL ,
+[var_color] [int] NOT NULL ,
+[var_label] [int] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPLinkout] (
-       [subsnp_id] [int] NOT NULL ,
-       [url_val] [varchar] (255) NOT NULL ,
-       [updated_time] [smalldatetime] NULL ,
-       [link_type] [varchar] (3) NOT NULL 
+CREATE TABLE [SNPAlleleFreq]
+(
+[snp_id] [int] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[chr_cnt] [float] NULL ,
+[freq] [float] NULL ,
+[last_updated_time] [datetime] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPMdFailLn] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
+CREATE TABLE [SNPAlleleFreq_TGP]
+(
+[snp_id] [int] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[freq] [float] NULL ,
+[count] [int] NULL ,
+[is_minor_allele] [bit] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPNoVariSeq] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
+CREATE TABLE [SNPAncestralAllele]
+(
+[snp_id] [int] NOT NULL ,
+[ancestral_allele_id] [int] NOT NULL ,
+[batch_id] [int] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPOmim] (
-       [subsnp_id] [int] NOT NULL ,
-       [omim_id] [int] NOT NULL ,
-       [allele_variant_id] [varchar] (32) NULL ,
-       [update_time] [smalldatetime] NULL ,
-       [mutObsCount] [int] NULL 
+CREATE TABLE [SNPClinSig]
+(
+[snp_id] [int] NOT NULL ,
+[clin_sig_id] [int] NULL ,
+[upd_time] [smalldatetime] NULL ,
+[clin_test_code] [varchar](16) NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPPubmed] (
-       [subsnp_id] [int] NOT NULL ,
-       [line_num] [int] NOT NULL ,
-       [pubmed_id] [int] NOT NULL ,
-       [updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [SubSNPSeq3_ins] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
+CREATE TABLE [SNPGtyFreq]
+(
+[snp_id] [int] NOT NULL ,
+[unigty_id] [int] NOT NULL ,
+[ind_cnt] [float] NULL ,
+[freq] [float] NULL ,
+[last_updated_time] [datetime] NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPSeq5_ins] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [tinyint] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL 
+CREATE TABLE [SNPHWProb]
+(
+[snp_id] [int] NOT NULL ,
+[df] [tinyint] NULL ,
+[chisq] [real] NULL ,
+[hwp] [real] NULL ,
+[ind_cnt] [smallint] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [SNPHistory]
+(
+[snp_id] [int] NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[history_create_time] [smalldatetime] NULL ,
+[comment] [varchar](255) NULL ,
+[reactivated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [SNPPubmed]
+(
+[snp_id] [int] NULL ,
+[subsnp_id] [int] NOT NULL ,
+[pubmed_id] [int] NULL ,
+[type] [varchar](9) NOT NULL ,
+[score] [int] NOT NULL ,
+[upd_time] [datetime] NOT NULL
+)
+GO
+
+CREATE TABLE [SNPSubSNPLink]
+(
+[subsnp_id] [int] NULL ,
+[snp_id] [int] NULL ,
+[substrand_reversed_flag] [tinyint] NULL ,
+[create_time] [datetime] NULL ,
+[last_updated_time] [datetime] NULL ,
+[build_id] [int] NULL ,
+[comment] [varchar](255) NULL
+)
+GO
+
+CREATE TABLE [SNPSubSNPLinkHistory]
+(
+[subsnp_id] [int] NULL ,
+[snp_id] [int] NULL ,
+[build_id] [int] NULL ,
+[history_create_time] [datetime] NOT NULL ,
+[link_create_time] [datetime] NULL ,
+[link_last_updated_time] [datetime] NULL ,
+[orien] [tinyint] NULL ,
+[build_id_when_history_made] [int] NULL ,
+[comment] [varchar](255) NULL
+)
+GO
+
+CREATE TABLE [SNPSuspect]
+(
+[snp_id] [int] NOT NULL ,
+[reason_code] [int] NULL ,
+[upd_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [dbo].[SuspectReasonCode](
+                [code] [int] NOT NULL,
+                [abbrev] [varchar](64) NULL,
+                [descrip] [varchar](255) NULL,
+                [create_time] [smalldatetime] NULL,
+                [last_update_time] [smalldatetime] NULL,
+PRIMARY KEY CLUSTERED 
+(
+                [code] ASC
+)WITH (PAD_INDEX  = OFF, STATISTICS_NORECOMPUTE  = OFF, IGNORE_DUP_KEY = OFF, ALLOW_ROW_LOCKS  = ON, ALLOW_PAGE_LOCKS  = ON) ON [PRIMARY]
+) ON [PRIMARY]
+
+CREATE TABLE [SNPVal]
+(
+[batch_id] [int] NOT NULL ,
+[snp_id] [int] NOT NULL
+)
+GO
+
+CREATE TABLE [SNP_HGVS]
+(
+[snp_id] [int] NULL ,
+[hgvs_name] [varchar](4000) NULL ,
+[source] [varchar](3) NOT NULL ,
+[upd_time] [datetime] NOT NULL
+)
+GO
+
+CREATE TABLE [SNP_bitfield]
+(
+[snp_id] [int] NOT NULL ,
+[ver_code] [tinyint] NULL ,
+[link_prop_b1] [tinyint] NULL ,
+[link_prop_b2] [tinyint] NULL ,
+[gene_prop_b1] [tinyint] NULL ,
+[gene_prop_b2] [tinyint] NULL ,
+[map_prop] [tinyint] NULL ,
+[freq_prop] [tinyint] NULL ,
+[gty_prop] [tinyint] NULL ,
+[hapmap_prop] [tinyint] NULL ,
+[pheno_prop] [tinyint] NULL ,
+[variation_class] [tinyint] NOT NULL ,
+[quality_check] [tinyint] NULL ,
+[upd_time] [datetime] NOT NULL ,
+[encoding] [binary] NULL
+)
+GO
+
+CREATE TABLE [SubPop]
+(
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[type] [char](3) NOT NULL ,
+[samplesize] [int] NOT NULL ,
+[submitted_strand_code] [tinyint] NULL ,
+[submitted_rs] [int] NULL ,
+[allele_flag] [tinyint] NULL ,
+[ambiguity_status] [tinyint] NULL ,
+[sub_heterozygosity] [real] NULL ,
+[est_heterozygosity] [real] NULL ,
+[est_het_se_sq] [real] NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[observed] [varchar](1000) NULL ,
+[sub_het_se_sq] [real] NULL ,
+[subpop_id] [int] IDENTITY(1,1) NOT NULL
+)
+GO
+
+CREATE TABLE [SubPopAllele]
+(
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[allele] [char](1) NOT NULL ,
+[other] [varchar](255) NULL ,
+[freq] [real] NULL ,
+[cnt_int] [int] NULL ,
+[freq_min] [real] NULL ,
+[freq_max] [real] NULL ,
+[data_src] [varchar](6) NULL ,
+[type] [char](3) NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[allele_flag] [tinyint] NULL ,
+[cnt] [real] NULL ,
+[allele_id] [int] NULL ,
+[subpop_id] [int] NOT NULL
+)
+GO
+
+CREATE TABLE [SubPopGty]
+(
+[subpop_id] [int] NOT NULL ,
+[gty_id] [int] NOT NULL ,
+[gty_str] [varchar](255) NULL ,
+[cnt] [real] NULL ,
+[freq] [real] NULL ,
+[last_updated_time] [smalldatetime] NOT NULL
+)
+GO
+
+CREATE TABLE [SubSNP]
+(
+[subsnp_id] [int] NOT NULL ,
+[known_snp_handle] [varchar](20) NULL ,
+[known_snp_loc_id] [varchar](64) NULL ,
+[known_snp_loc_id_upp] [varchar](64) NULL ,
+[batch_id] [int] NOT NULL ,
+[loc_snp_id] [varchar](64) NULL ,
+[loc_snp_id_upp] [varchar](64) NULL ,
+[synonym_names] [varchar](255) NULL ,
+[loc_sts_id] [varchar](64) NULL ,
+[loc_sts_id_upp] [varchar](64) NULL ,
+[segregate] [char](1) NOT NULL ,
+[indiv_homozygosity_detected] [char](1) NULL ,
+[PCR_confirmed_ind] [char](1) NULL ,
+[gene_name] [varchar](64) NULL ,
+[sequence_len] [int] NULL ,
+[samplesize] [int] NULL ,
+[EXPRESSED_SEQUENCE_ind] [char](1) NULL ,
+[SOMATIC_ind] [char](1) NULL ,
+[sub_locus_id] [int] NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[ancestral_allele] [varchar](255) NULL ,
+[CpG_code] [tinyint] NULL ,
+[variation_id] [int] NULL ,
+[top_or_bot_strand] [char](1) NULL ,
+[validation_status] [tinyint] NULL ,
+[snp_id] [int] NULL ,
+[tax_id] [int] NOT NULL ,
+[chr_id] [tinyint] NULL
+)
+GO
+
+CREATE TABLE [SubSNPAcc_ins]
+(
+[subsnp_id] [int] NOT NULL ,
+[acc_type_ind] [char](1) NOT NULL ,
+[acc_part] [varchar](16) NOT NULL ,
+[acc_ver] [int] NULL
+)
+GO
+
+CREATE TABLE [SubSNPCommLine_ins]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)
+GO
+
+CREATE TABLE [SubSNPHGVS]
+(
+[subsnp_id] [int] NOT NULL ,
+[sub_hgvs_c] [varchar](32) NULL ,
+[sub_hgvs_g] [varchar](64) NULL ,
+[sub_hgvs_p] [varchar](32) NULL ,
+[cal_hgvs_c] [varchar](32) NULL ,
+[cal_hgvs_g] [varchar](32) NULL ,
+[cal_hgvs_p] [varchar](32) NULL ,
+[upd_time] [smalldatetime] NULL ,
+[gene_id] [int] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNPSeqPos] (
-       [subsnp_id] [int] NOT NULL ,
-       [contig_acc] [varchar] (20) NOT NULL ,
-       [contig_pos] [int] NOT NULL ,
-       [chr] [varchar] (2) NULL ,
-       [upstream_len] [int] NOT NULL ,
-       [downstream_len] [int] NOT NULL ,
-       [last_update_time] [smalldatetime] NOT NULL ,
-       [mrna_acc] [varchar] (24) NULL 
+CREATE TABLE [SubSNPLinkout]
+(
+[subsnp_id] [int] NOT NULL ,
+[url_val] [varchar](255) NOT NULL ,
+[updated_time] [smalldatetime] NULL ,
+[link_type] [varchar](3) NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubSNP_top_or_bot] (
-       [subsnp_id] [int] NOT NULL ,
-       [top_or_bot] [char] (1) NULL ,
-       [step] [tinyint] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
+CREATE TABLE [SubSNPMdFailLn]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [SubmittedIndividual] (
-       [submitted_ind_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [loc_ind_id_upp] [varchar] (64) NOT NULL ,
-       [ind_id] [int] NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [tax_id] [int] NOT NULL ,
-       [loc_ind_alias] [varchar] (64) NULL ,
-       [loc_ind_id] [varchar] (64) NULL ,
-       [loc_ind_grp] [varchar] (64) NULL ,
-       [ploidy] [tinyint] NULL 
+CREATE TABLE [SubSNPNoVariSeq]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL

 )
 )

-GO
-
-
-CREATE TABLE [Synonym] (
-       [subsnp_id] [int] NOT NULL ,
-       [type] [varchar] (64) NOT NULL ,
-       [name] [varchar] (64) NULL 
+GO
+
+CREATE TABLE [SubSNPOmim]
+(
+[subsnp_id] [int] NOT NULL ,
+[omim_id] [int] NOT NULL ,
+[allele_variant_id] [varchar](32) NULL ,
+[update_time] [smalldatetime] NULL ,
+[mutObsCount] [int] NULL
+)
+GO
+
+CREATE TABLE [SubSNPPubmed]
+(
+[subsnp_id] [int] NOT NULL ,
+[line_num] [int] NOT NULL ,
+[pubmed_id] [int] NOT NULL ,
+[updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [SubSNPSeq3_ins]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)
+GO
+
+CREATE TABLE [SubSNPSeq5_ins]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [tinyint] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL
+)
+GO
+
+CREATE TABLE [SubSNPSeqPos]
+(
+[subsnp_id] [int] NOT NULL ,
+[contig_acc] [varchar](20) NOT NULL ,
+[contig_pos] [int] NOT NULL ,
+[chr] [varchar](2) NULL ,
+[upstream_len] [int] NOT NULL ,
+[downstream_len] [int] NOT NULL ,
+[last_update_time] [smalldatetime] NOT NULL ,
+[mrna_acc] [varchar](24) NULL
+)
+GO
+
+CREATE TABLE [SubSNP_top_or_bot]
+(
+[subsnp_id] [int] NOT NULL ,
+[top_or_bot] [char](1) NULL ,
+[step] [tinyint] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [SubmittedIndividual]
+(
+[submitted_ind_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[loc_ind_id_upp] [varchar](64) NOT NULL ,
+[ind_id] [int] NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[tax_id] [int] NOT NULL ,
+[loc_ind_alias] [varchar](64) NULL ,
+[loc_ind_id] [varchar](64) NULL ,
+[loc_ind_grp] [varchar](64) NULL ,
+[ploidy] [tinyint] NULL
+)
+GO
+
+CREATE TABLE [Synonym]
+(
+[subsnp_id] [int] NOT NULL ,
+[type] [varchar](64) NOT NULL ,
+[name] [varchar](64) NULL
+)
+GO
+
+CREATE TABLE [b135_ContigInfo_37_3]
+(
+[ctg_id] [int] NOT NULL ,
+[tax_id] [int] NOT NULL ,
+[contig_acc] [varchar](32) NOT NULL ,
+[contig_ver] [tinyint] NOT NULL ,
+[contig_name] [varchar](63) NULL ,
+[contig_chr] [varchar](32) NULL ,
+[contig_start] [int] NULL ,
+[contig_end] [int] NULL ,
+[orient] [tinyint] NULL ,
+[contig_gi] [int] NOT NULL ,
+[group_term] [varchar](32) NULL ,
+[group_label] [varchar](32) NULL ,
+[contig_label] [varchar](32) NULL ,
+[build_id] [int] NOT NULL ,
+[build_ver] [int] NOT NULL ,
+[last_updated_time] [datetime] NOT NULL ,
+[placement_status] [tinyint] NOT NULL ,
+[asm_acc] [varchar](32) NULL ,
+[asm_version] [smallint] NULL ,
+[chr_gi] [int] NULL ,
+[par_fl] [tinyint] NULL ,
+[top_level_fl] [tinyint] NOT NULL ,
+[gen_rgn] [varchar](32) NULL
+)
+GO
+
+CREATE TABLE [b135_MapLinkHGVS_37_3]
+(
+[snp_type] [char](2) NOT NULL ,
+[snp_id] [int] NULL ,
+[gi] [int] NULL ,
+[accession_how_cd] [int] NOT NULL ,
+[offset] [int] NULL ,
+[asn_to] [int] NULL ,
+[lf_ngbr] [int] NULL ,
+[rf_ngbr] [int] NULL ,
+[lc_ngbr] [int] NULL ,
+[rc_ngbr] [int] NULL ,
+[loc_type] [tinyint] NULL ,
+[build_id] [int] NULL ,
+[process_time] [smalldatetime] NULL ,
+[process_status] [int] NOT NULL ,
+[orientation] [tinyint] NULL ,
+[allele] [varchar](255) NULL ,
+[aln_quality] [real] NULL ,
+[num_mism] [int] NULL ,
+[num_del] [int] NULL ,
+[num_ins] [int] NULL ,
+[tier] [tinyint] NULL ,
+[ctg_gi] [int] NULL ,
+[ctg_from] [int] NULL ,
+[ctg_to] [int] NULL ,
+[ctg_orient] [tinyint] NULL
+)
+GO
+
+CREATE TABLE [b135_MapLinkInfo_37_3]
+(
+[gi] [int] NOT NULL ,
+[accession] [varchar](32) NOT NULL ,
+[accession_ver] [smallint] NOT NULL ,
+[acc] [varchar](32) NOT NULL ,
+[version] [smallint] NOT NULL ,
+[status] [varchar](32) NULL ,
+[create_dt] [smalldatetime] NULL ,
+[update_dt] [smalldatetime] NULL ,
+[cds_from] [int] NULL ,
+[cds_to] [int] NULL
+)
+GO
+
+CREATE TABLE [b135_MapLink_37_3]
+(
+[snp_type] [char](2) NOT NULL ,
+[snp_id] [int] NULL ,
+[gi] [int] NULL ,
+[accession_how_cd] [int] NULL ,
+[offset] [int] NULL ,
+[asn_to] [int] NULL ,
+[lf_ngbr] [int] NULL ,
+[rf_ngbr] [int] NULL ,
+[lc_ngbr] [int] NULL ,
+[rc_ngbr] [int] NULL ,
+[loc_type] [tinyint] NOT NULL ,
+[build_id] [int] NULL ,
+[process_time] [smalldatetime] NOT NULL ,
+[process_status] [int] NOT NULL ,
+[orientation] [tinyint] NULL ,
+[allele] [varchar](1024) NULL ,
+[aln_quality] [real] NULL ,
+[num_mism] [int] NULL ,
+[num_ins] [int] NULL ,
+[num_del] [int] NULL ,
+[tier] [tinyint] NULL ,
+[ctg_gi] [int] NULL ,
+[ctg_from] [int] NULL ,
+[ctg_to] [int] NULL ,
+[ctg_orient] [tinyint] NULL ,
+[source] [varchar](5) NOT NULL
+)
+GO
+
+CREATE TABLE [b135_ProteinInfo_37_3]
+(
+[gi] [int] NOT NULL ,
+[acc] [varchar](32) NOT NULL ,
+[version] [smallint] NOT NULL ,
+[prot_gi] [int] NOT NULL ,
+[prot_acc] [varchar](32) NOT NULL ,
+[prot_ver] [smallint] NOT NULL ,
+[status] [varchar](32) NULL ,
+[create_dt] [smalldatetime] NULL ,
+[update_dt] [smalldatetime] NULL
+)
+GO
+
+CREATE TABLE [b135_Remapped_37_3]
+(
+[snp_type] [char](2) NOT NULL ,
+[snp_id] [int] NULL ,
+[src_gi] [int] NOT NULL ,
+[src_from] [int] NOT NULL ,
+[src_to] [int] NOT NULL ,
+[src_l_ngbr] [int] NOT NULL ,
+[src_r_ngbr] [int] NOT NULL ,
+[src_orientation] [tinyint] NULL ,
+[src_aln_quality] [real] NULL ,
+[tgt_gi] [int] NULL ,
+[tgt_from] [int] NULL ,
+[tgt_to] [int] NULL ,
+[tgt_l_ngbr] [int] NULL ,
+[tgt_r_ngbr] [int] NULL ,
+[tgt_loc_type] [tinyint] NOT NULL ,
+[tgt_orientation] [tinyint] NULL ,
+[tgt_allele] [varchar](1024) NULL ,
+[tgt_aln_quality] [real] NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[comment] [varchar](255) NULL
+)
+GO
+
+CREATE TABLE [b135_SNPChrPosOnRef_37_3]
+(
+[snp_id] [int] NOT NULL ,
+[chr] [varchar](32) NOT NULL ,
+[pos] [int] NULL ,
+[orien] [int] NULL ,
+[neighbor_snp_list] [int] NULL ,
+[isPAR] [varchar](1) NOT NULL
+)
+GO
+
+CREATE TABLE [b135_SNPContigLoc_37_3]
+(
+[snp_type] [char](2) NOT NULL ,
+[snp_id] [int] NOT NULL ,
+[ctg_id] [int] NOT NULL ,
+[asn_from] [int] NOT NULL ,
+[asn_to] [int] NOT NULL ,
+[lf_ngbr] [int] NULL ,
+[rf_ngbr] [int] NULL ,
+[lc_ngbr] [int] NOT NULL ,
+[rc_ngbr] [int] NOT NULL ,
+[loc_type] [tinyint] NOT NULL ,
+[phys_pos_from] [int] NULL ,
+[snp_bld_id] [int] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[process_status] [tinyint] NOT NULL ,
+[orientation] [tinyint] NULL ,
+[allele] [varchar](1024) NULL ,
+[loc_sts_uid] [int] NULL ,
+[aln_quality] [real] NULL ,
+[num_mism] [int] NULL ,
+[num_del] [int] NULL ,
+[num_ins] [int] NULL ,
+[tier] [tinyint] NULL
+)
+GO
+
+CREATE TABLE [b135_SNPContigLocusId_37_3]
+(
+[snp_id] [int] NOT NULL ,
+[contig_acc] [varchar](32) NULL ,
+[contig_ver] [tinyint] NULL ,
+[asn_from] [int] NULL ,
+[asn_to] [int] NULL ,
+[locus_id] [int] NULL ,
+[locus_symbol] [varchar](128) NULL ,
+[mrna_acc] [varchar](32) NOT NULL ,
+[mrna_ver] [smallint] NOT NULL ,
+[protein_acc] [varchar](32) NULL ,
+[protein_ver] [smallint] NULL ,
+[fxn_class] [int] NOT NULL ,
+[reading_frame] [int] NULL ,
+[allele] [varchar](256) NULL ,
+[residue] [varchar](1024) NULL ,
+[aa_position] [int] NULL ,
+[build_id] [varchar](4) NOT NULL ,
+[ctg_id] [int] NULL ,
+[mrna_start] [int] NULL ,
+[mrna_stop] [int] NULL ,
+[codon] [varchar](1024) NULL ,
+[protRes] [char](3) NULL ,
+[contig_gi] [int] NULL ,
+[mrna_gi] [int] NOT NULL ,
+[mrna_orien] [tinyint] NULL ,
+[cp_mrna_ver] [smallint] NULL ,
+[cp_mrna_gi] [int] NULL ,
+[verComp] [varchar](7) NULL
+)
+GO
+
+CREATE TABLE [b135_SNPContigProtein_37_3]
+(
+[snp_id] [int] NOT NULL ,
+[contig_gi] [int] NOT NULL ,
+[contig_start] [int] NOT NULL ,
+[contig_stop] [int] NOT NULL ,
+[contig_orien] [tinyint] NOT NULL ,
+[contig_allele] [varchar](1024) NULL ,
+[mrna_gi] [int] NOT NULL ,
+[mrna_acc] [varchar](32) NOT NULL ,
+[mrna_ver] [smallint] NOT NULL ,
+[mrna_start] [int] NULL ,
+[mrna_stop] [int] NULL ,
+[mrna_orien] [tinyint] NULL ,
+[gene_symbol] [varchar](128) NULL ,
+[gene_id] [int] NULL ,
+[prot_gi] [int] NULL ,
+[prot_acc] [varchar](32) NULL ,
+[prot_ver] [smallint] NULL ,
+[prot_start] [int] NULL ,
+[prot_stop] [int] NULL ,
+[frame] [tinyint] NULL ,
+[var_allele] [varchar](1024) NULL ,
+[residue] [varchar](1024) NULL ,
+[mrna_codon] [varchar](1024) NULL ,
+[codon] [varchar](1024) NULL ,
+[fxn_class] [int] NOT NULL ,
+[in_stop_codon] [tinyint] NULL
+)
+GO
+
+CREATE TABLE [b135_SNPMapInfo_37_3]
+(
+[snp_type] [char](2) NOT NULL ,
+[snp_id] [int] NOT NULL ,
+[chr_cnt] [int] NOT NULL ,
+[contig_cnt] [int] NOT NULL ,
+[loc_cnt] [int] NOT NULL ,
+[weight] [int] NOT NULL ,
+[hap_cnt] [int] NULL ,
+[placed_cnt] [int] NOT NULL ,
+[unlocalized_cnt] [int] NOT NULL ,
+[unplaced_cnt] [int] NOT NULL ,
+[aligned_cnt] [int] NOT NULL ,
+[md5] [char](32) NULL ,
+[asm_acc] [varchar](32) NULL ,
+[asm_version] [smallint] NULL ,
+[assembly] [varchar](32) NULL
+)
+GO
+
+CREATE TABLE [b135_SNPMapLinkProtein_37_3]
+(
+[snp_id] [int] NOT NULL ,
+[mrna_acc] [varchar](32) NOT NULL ,
+[mrna_ver] [smallint] NOT NULL ,
+[mrna_gi] [int] NOT NULL ,
+[mrna_start] [int] NULL ,
+[mrna_stop] [int] NULL ,
+[mrna_orien] [tinyint] NULL ,
+[allele] [varchar](1024) NULL ,
+[gene_symbol] [varchar](128) NULL ,
+[gene_id] [int] NULL ,
+[prot_gi] [int] NULL ,
+[prot_acc] [varchar](32) NULL ,
+[prot_ver] [smallint] NULL ,
+[prot_start] [int] NULL ,
+[prot_stop] [int] NULL ,
+[frame] [tinyint] NULL ,
+[var_allele] [varchar](1024) NULL ,
+[residue] [varchar](1024) NULL ,
+[mrna_codon] [varchar](1024) NULL ,
+[codon] [varchar](1024) NULL ,
+[fxn_class] [int] NOT NULL ,
+[ctg_gi] [int] NULL ,
+[ctg_from] [int] NULL ,
+[ctg_to] [int] NULL ,
+[ctg_orientation] [tinyint] NULL ,
+[source] [varchar](7) NULL
+)
+GO
+
+CREATE TABLE [dn_IND_batchCount]
+(
+[batch_id] [int] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[ss_cnt] [int] NOT NULL ,
+[rs_cnt] [int] NOT NULL ,
+[ind_cnt] [int] NOT NULL ,
+[create_time] [datetime] NOT NULL
+)
+GO
+
+CREATE TABLE [dn_IND_batch_pop]
+(
+[batch_id] [smallint] NOT NULL ,
+[pop_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL
+)
+GO
+
+CREATE TABLE [dn_PopulationIndGrp]
+(
+[pop_id] [int] NOT NULL ,
+[ind_grp_name] [varchar](32) NOT NULL ,
+[ind_grp_code] [tinyint] NOT NULL
+)
+GO
+
+CREATE TABLE [dn_batchCount]
+(
+[batch_id] [int] NOT NULL ,
+[ss_cnt] [int] NOT NULL ,
+[rs_cnt] [int] NOT NULL ,
+[rs_validated_cnt] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[pop_cnt] [int] NULL ,
+[ind_cnt] [int] NULL
+)
+GO
+
+CREATE TABLE [dn_handleCount]
+(
+[handle] [varchar](20) NOT NULL ,
+[batch_type] [char](3) NOT NULL ,
+[ss_cnt] [int] NOT NULL ,
+[rs_cnt] [int] NULL ,
+[rs_validated_cnt] [int] NULL ,
+[create_time] [smalldatetime] NOT NULL
+)
+GO
+
+CREATE TABLE [dn_snpFxnCnt]
+(
+[build_id] [int] NOT NULL ,
+[fxn_class] [tinyint] NULL ,
+[snp_cnt] [int] NOT NULL ,
+[gene_cnt] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[tax_id] [int] NOT NULL
+)
+GO
+
+CREATE TABLE [dn_table_rowcount]
+(
+[tabname] [varchar](64) NOT NULL ,
+[row_cnt] [int] NOT NULL ,
+[build_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL ,
+[rows_in_spaceused] [int] NULL ,
+[reserved_KB_spaceused] [int] NULL ,
+[data_KB_spaceused] [int] NULL ,
+[index_size_KB_spaceused] [int] NULL ,
+[unused_KB_spaceused] [int] NULL

 )
 GO
 
 )
 GO
 

-
-CREATE TABLE [b132_ContigInfo_37_1] (
-       [ctg_id] [int] NOT NULL ,
-       [tax_id] [int] NOT NULL ,
-       [contig_acc] [varchar] (32) NOT NULL ,
-       [contig_ver] [tinyint] NULL ,
-       [contig_name] [varchar] (32) NOT NULL ,
-       [contig_chr] [varchar] (32) NULL ,
-       [contig_start] [int] NULL ,
-       [contig_end] [int] NULL ,
-       [orient] [tinyint] NULL ,
-       [contig_gi] [int] NULL ,
-       [group_term] [varchar] (32) NULL ,
-       [group_label] [varchar] (32) NULL ,
-       [contig_label] [varchar] (32) NULL ,
-       [build_id] [int] NULL ,
-       [build_ver] [int] NULL ,
-       [last_updated_time] [datetime] NOT NULL ,
-       [placement_status] [tinyint] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [b132_GenomeAssemblyInfo_37_1] (
-       [assembly] [varchar] (32) NOT NULL ,
-       [assembly_type] [varchar] (8) NOT NULL ,
-       [rep_order] [tinyint] NULL ,
-       [comment] [varchar] (255) NULL ,
-       [upd_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [b132_MapLinkInfo_37_1] (
-       [gi] [int] NULL ,
-       [accession] [varchar] (127) NULL ,
-       [accession_ver] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [b132_MapLink_37_1] (
-       [snp_type] [char] (2) NOT NULL ,
-       [snp_id] [int] NULL ,
-       [gi] [int] NOT NULL ,
-       [accession_how_cd] [int] NULL ,
-       [offset] [int] NULL ,
-       [asn_to] [int] NULL ,
-       [lf_ngbr] [int] NULL ,
-       [rf_ngbr] [int] NULL ,
-       [lc_ngbr] [int] NULL ,
-       [rc_ngbr] [int] NULL ,
-       [loc_type] [tinyint] NULL ,
-       [build_id] [int] NULL ,
-       [process_time] [datetime] NULL ,
-       [process_status] [int] NULL ,
-       [orientation] [int] NULL ,
-       [allele] [varchar] (1024) NULL ,
-       [aln_quality] [float] NULL ,
-       [num_mism] [int] NULL ,
-       [num_ins] [int] NULL ,
-       [num_del] [int] NULL ,
-       [tier] [int] NULL ,
-       [ctg_gi] [int] NULL ,
-       [ctg_from] [int] NULL ,
-       [ctg_to] [int] NULL ,
-       [ctg_orient] [tinyint] NULL ,
-       [source] [varchar] (5) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [b132_ProteinInfo_37_1] (
-       [prot_gi] [int] NULL ,
-       [prot_acc] [varchar] (128) NULL ,
-       [prot_ver] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [b132_SNPChrPosOnRef_37_1] (
-       [snp_id] [int] NULL ,
-       [chr] [varchar] (32) NULL ,
-       [pos] [int] NULL ,
-       [orien] [int] NULL ,
-       [neighbor_snp_list] [int] NULL ,
-       [isPAR] [varchar] (1) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [b132_SNPContigLoc_37_1] (
-       [snp_type] [char] (2) NOT NULL ,
-       [snp_id] [int] NOT NULL ,
-       [ctg_id] [int] NOT NULL ,
-       [asn_from] [int] NOT NULL ,
-       [asn_to] [int] NOT NULL ,
-       [lf_ngbr] [int] NULL ,
-       [rf_ngbr] [int] NULL ,
-       [lc_ngbr] [int] NOT NULL ,
-       [rc_ngbr] [int] NOT NULL ,
-       [loc_type] [tinyint] NOT NULL ,
-       [phys_pos_from] [int] NULL ,
-       [snp_bld_id] [int] NOT NULL ,
-       [last_updated_time] [datetime] NOT NULL ,
-       [process_status] [int] NOT NULL ,
-       [orientation] [tinyint] NULL ,
-       [allele] [varchar] (1024) NULL ,
-       [loc_sts_uid] [int] NULL ,
-       [aln_quality] [float] NULL ,
-       [num_mism] [int] NULL ,
-       [num_del] [int] NULL ,
-       [num_ins] [int] NULL ,
-       [tier] [tinyint] NULL 
-)
-GO
-
-
-CREATE TABLE [b132_SNPContigLocusId_37_1] (
-       [snp_id] [int] NULL ,
-       [contig_acc] [varchar] (32) NULL ,
-       [contig_ver] [tinyint] NULL ,
-       [asn_from] [int] NULL ,
-       [asn_to] [int] NULL ,
-       [locus_id] [int] NULL ,
-       [locus_symbol] [varchar] (128) NULL ,
-       [mrna_acc] [varchar] (128) NULL ,
-       [mrna_ver] [int] NULL ,
-       [protein_acc] [varchar] (128) NULL ,
-       [protein_ver] [int] NULL ,
-       [fxn_class] [int] NULL ,
-       [reading_frame] [int] NULL ,
-       [allele] [varchar] (256) NULL ,
-       [residue] [varchar] (1024) NULL ,
-       [aa_position] [int] NULL ,
-       [build_id] [varchar] (4) NOT NULL ,
-       [ctg_id] [int] NULL ,
-       [mrna_start] [int] NULL ,
-       [mrna_stop] [int] NULL ,
-       [codon] [varchar] (1024) NULL ,
-       [protRes] [char] (3) NULL ,
-       [contig_gi] [int] NULL ,
-       [mrna_gi] [int] NULL ,
-       [mrna_orien] [tinyint] NULL ,
-       [cp_mrna_ver] [int] NULL ,
-       [cp_mrna_gi] [int] NULL ,
-       [verComp] [varchar] (7) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [b132_SNPMapInfo_37_1] (
-       [snp_type] [char] (2) NOT NULL ,
-       [snp_id] [int] NOT NULL ,
-       [chr_cnt] [int] NOT NULL ,
-       [contig_cnt] [int] NOT NULL ,
-       [loc_cnt] [int] NOT NULL ,
-       [weight] [int] NOT NULL ,
-       [hap_cnt] [int] NOT NULL ,
-       [placed_cnt] [int] NOT NULL ,
-       [grouped_cnt] [int] NOT NULL ,
-       [unplaced_cnt] [int] NOT NULL ,
-       [md5] [char] (32) NULL ,
-       [assembly] [varchar] (32) NULL 
-)
-GO
-
-
-CREATE TABLE [dn_IND_batchCount] (
-       [batch_id] [int] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [ss_cnt] [int] NOT NULL ,
-       [rs_cnt] [int] NOT NULL ,
-       [ind_cnt] [int] NOT NULL ,
-       [create_time] [datetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_IND_batch_pop] (
-       [batch_id] [smallint] NOT NULL ,
-       [pop_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_PopulationIndGrp] (
-       [pop_id] [int] NOT NULL ,
-       [ind_grp_name] [varchar] (32) NOT NULL ,
-       [ind_grp_code] [tinyint] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_batchCount] (
-       [batch_id] [int] NOT NULL ,
-       [ss_cnt] [int] NOT NULL ,
-       [rs_cnt] [int] NOT NULL ,
-       [rs_validated_cnt] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [pop_cnt] [int] NULL ,
-       [ind_cnt] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [dn_handleCount] (
-       [handle] [varchar] (20) NOT NULL ,
-       [batch_type] [char] (3) NOT NULL ,
-       [ss_cnt] [int] NOT NULL ,
-       [rs_cnt] [int] NULL ,
-       [rs_validated_cnt] [int] NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_snpFxnCnt] (
-       [build_id] [int] NOT NULL ,
-       [fxn_class] [tinyint] NULL ,
-       [snp_cnt] [int] NOT NULL ,
-       [gene_cnt] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [tax_id] [int] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_table_rowcount] (
-       [tabname] [varchar] (64) NOT NULL ,
-       [row_cnt] [int] NOT NULL ,
-       [build_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL ,
-       [rows_in_spaceused] [int] NULL ,
-       [reserved_KB_spaceused] [int] NULL ,
-       [data_KB_spaceused] [int] NULL ,
-       [index_size_KB_spaceused] [int] NULL ,
-       [unused_KB_spaceused] [int] NULL 
-)
-GO
-
-

diff --git a/schema/human_9606_schema/human_9606_table_postgresql.sql b/schema/human_9606_schema/human_9606_table_postgresql.sql
index 21f01819255a3ef63b6ff686cbc64290b50cd241..9a76dddc8e4d189fdd01ee0480042fad04099798 100644 (file)
--- a/schema/human_9606_schema/human_9606_table_postgresql.sql
+++ b/schema/human_9606_schema/human_9606_table_postgresql.sql
@@ -1,826 +1,918 @@
-CREATE TABLE AlleleFreqBySsPop (
-       subsnp_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       allele_id int NOT NULL ,
-       source varchar (2) NOT NULL ,
-       cnt real NULL ,
-       freq real NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE Batch (
-       batch_id int NOT NULL ,
-       handle varchar (20) NOT NULL ,
-       loc_batch_id varchar (64) NOT NULL ,
-       loc_batch_id_upp varchar (64) NOT NULL ,
-       batch_type char (3) NOT NULL ,
-       status smallint NULL ,
-       simul_sts_status smallint NOT NULL ,
-       moltype varchar (8) NOT NULL ,
-       method_id int NOT NULL ,
-       samplesize int NULL ,
-       synonym_type varchar (255) NULL ,
-       submitted_time TIMESTAMP NOT NULL ,
-       linkout_url varchar (255) NULL ,
-       pop_id int NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       success_rate_int int NULL ,
-       build_id int NULL ,
-       tax_id int NOT NULL ,
-       ss_cnt int NULL 
-)
-;
-
-CREATE TABLE BatchCita (
-       batch_id int NOT NULL ,
-       position int NOT NULL ,
-       pub_id int NOT NULL ,
-       citation varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE BatchCommLine (
-       batch_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE BatchCultivar (
-       batch_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE BatchMeExLine (
-       batch_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE BatchStrain (
-       batch_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE BatchValCode (
-       batch_id int NOT NULL ,
-       validation_status smallint NOT NULL 
-)
-;
-
-CREATE TABLE Contact (
-       batch_id int NOT NULL ,
-       handle varchar (20) NOT NULL ,
-       name varchar (255) NOT NULL ,
-       fax varchar (255) NULL ,
-       phone varchar (255) NULL ,
-       email varchar (255) NULL ,
-       lab varchar (255) NULL ,
-       institution varchar (255) NULL ,
-       address varchar (255) NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE FreqSummaryBySsPop (
-       subsnp_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       source varchar (1) NOT NULL ,
-       chr_cnt int NOT NULL ,
-       ind_cnt int NOT NULL ,
-       non_founder_ind_cnt int NOT NULL ,
-       chisq real NULL ,
-       df smallint NULL ,
-       hwp real NULL ,
-       het real NULL ,
-       het_se real NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE GeneIdToName (
-       gene_id int NOT NULL ,
-       gene_symbol varchar (64) NOT NULL ,
-       gene_name varchar (255) NULL ,
-       gene_type varchar (255) NULL ,
-       tax_id int NOT NULL ,
-       last_update_time TIMESTAMP NOT NULL ,
-       ref_tax_id int NOT NULL ,
-       dbSNP_tax_id int NOT NULL ,
-       ins_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE GtyFreqBySsPop (
-       subsnp_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       unigty_id int NOT NULL ,
-       source varchar (1) NULL ,
-       cnt real NULL ,
-       freq real NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE IndGrpCode (
-       code smallint NOT NULL ,
-       name varchar (32) NOT NULL ,
-       descrip varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE IndivBySource (
-       ind_id int NOT NULL ,
-       src_id int NOT NULL ,
-       src_ind_id varchar (64) NOT NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       src_ind_grp varchar (64) NULL 
-)
-;
-
-CREATE TABLE IndivSourceCode (
-       code int NOT NULL ,
-       name varchar (22) NOT NULL ,
-       descrip varchar (255) NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       src_type varchar (10) NULL ,
-       display_order smallint NULL 
-)
-;
-
-CREATE TABLE Individual (
-       ind_id int NOT NULL ,
-       descrip varchar (255) NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       tax_id int NULL ,
-       ind_grp smallint NULL 
-)
-;
-
-CREATE TABLE OmimVarLocusIdSNP (
-       omim_id int NOT NULL ,
-       locus_id int NULL ,
-       omimvar_id char (4) NULL ,
-       locus_symbol char (10) NULL ,
-       var1 char (20) NULL ,
-       aa_position int NULL ,
-       var2 char (20) NULL ,
-       var_class int NOT NULL ,
-       snp_id int NOT NULL 
-)
-;
-
-CREATE TABLE Pedigree (
-       ped_id numeric(7, 0) NOT NULL ,
-       curator varchar (12) NOT NULL ,
-       curator_ped_id varchar (12) NOT NULL ,
-       create_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE PedigreeIndividual (
-       ped_id decimal(7, 0) NOT NULL ,
-       ind_id int NOT NULL ,
-       ma_ind_id int NULL ,
-       pa_ind_id int NULL ,
-       sex char (1) NULL ,
-       create_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE PopLine (
-       pop_id int NOT NULL ,
-       line_num int NOT NULL ,
-       line varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE PopMandLine (
-       pop_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE Population (
-       pop_id int NOT NULL ,
-       handle varchar (20) NOT NULL ,
-       loc_pop_id varchar (64) NOT NULL ,
-       loc_pop_id_upp varchar (64) NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       src_id int NULL 
-)
-;
-
-CREATE TABLE RsMergeArch (
-       rsHigh int NULL ,
-       rsLow int NULL ,
-       build_id int NULL ,
-       orien smallint NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       last_updated_time TIMESTAMP NOT NULL ,
-       rsCurrent int NULL ,
-       orien2Current smallint NULL ,
-       comment varchar (255) NULL 
-)
-;
-
-CREATE TABLE SNP (
-       snp_id int NULL ,
-       avg_heterozygosity real NULL ,
-       het_se real NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       CpG_code smallint NULL ,
-       tax_id int NULL ,
-       validation_status smallint NULL ,
-       exemplar_subsnp_id int NULL ,
-       univar_id int NULL ,
-       cnt_subsnp int NULL ,
-       map_property smallint NULL 
-)
-;
-
-CREATE TABLE SNP3D (
-       snp_id int NOT NULL ,
-       protein_acc char (50) NOT NULL ,
-       master_gi int NOT NULL ,
-       neighbor_gi int NOT NULL ,
-       aa_position int NOT NULL ,
-       var_res char (1) NOT NULL ,
-       contig_res char (1) NOT NULL ,
-       neighbor_res char (1) NOT NULL ,
-       neighbor_pos int NOT NULL ,
-       var_color int NOT NULL ,
-       var_label int NOT NULL 
-)
-;
-
-CREATE TABLE SNPAlleleFreq (
-       snp_id int NOT NULL ,
-       allele_id int NOT NULL ,
-       chr_cnt float NULL ,
-       freq float NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE SNPAncestralAllele (
-       snp_id int NOT NULL ,
-       ancestral_allele_id int NOT NULL ,
-       batch_id int DEFAULT 0 NOT NULL 
-)
-;
-
-CREATE TABLE SNPGtyFreq (
-       snp_id int NOT NULL ,
-       unigty_id int NOT NULL ,
-       ind_cnt float NULL ,
-       freq float NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE SNPHWProb (
-       snp_id int NOT NULL ,
-       df smallint NULL ,
-       chisq real NULL ,
-       hwp real NULL ,
-       ind_cnt smallint NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE SNPHistory (
-       snp_id int NOT NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NOT NULL ,
-       history_create_time TIMESTAMP NULL ,
-       comment varchar (255) NULL 
-)
-;
-
-CREATE TABLE SNPPubmed (
-       snp_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       pubmed_id int NOT NULL ,
-       type varchar (16) NOT NULL ,
-       score int NOT NULL ,
-       upd_date TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE SNPSubSNPLink (
-       subsnp_id int NULL ,
-       snp_id int NULL ,
-       substrand_reversed_flag smallint NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       build_id int NULL ,
-       comment varchar (255) NULL 
-)
-;
-
-CREATE TABLE SNPSubSNPLinkHistory (
-       subsnp_id int NULL ,
-       snp_id int NULL ,
-       build_id int NULL ,
-       history_create_time TIMESTAMP NOT NULL ,
-       link_create_time TIMESTAMP NULL ,
-       link_last_updated_time TIMESTAMP NULL ,
-       orien smallint NULL ,
-       build_id_when_history_made int NULL ,
-       comment varchar (255) NULL 
-)
-;
-
-CREATE TABLE SNPVal (
-       batch_id int NOT NULL ,
-       snp_id int NOT NULL 
-)
-;
-
-CREATE TABLE SNP_HGVS (
-       snp_id int NULL ,
-       hgvs_name varchar (256) NULL ,
-       source varchar (8) NOT NULL ,
-       upd_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE SNP_bitfield (
-       snp_id int NOT NULL ,
-       ver_code smallint NULL ,
-       link_prop_b1 smallint NULL ,
-       link_prop_b2 smallint NULL ,
-       gene_prop_b1 smallint NULL ,
-       gene_prop_b2 smallint NULL ,
-       map_prop smallint NULL ,
-       freq_prop smallint NULL ,
-       gty_prop smallint NULL ,
-       hapmap_prop smallint NULL ,
-       pheno_prop smallint NULL ,
-       variation_class smallint NOT NULL ,
-       quality_check smallint NULL ,
-       upd_time TIMESTAMP NOT NULL ,
-       encoding bytea NULL 
-)
-;
-
-CREATE TABLE SubPop (
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       type char (3) NOT NULL ,
-       samplesize int NOT NULL ,
-       submitted_strand_code smallint NULL ,
-       submitted_rs int NULL ,
-       allele_flag smallint NULL ,
-       ambiguity_status smallint NULL ,
-       sub_heterozygosity real NULL ,
-       est_heterozygosity real NULL ,
-       est_het_se_sq real NULL ,
-       last_updated_time TIMESTAMP DEFAULT NOW() NOT NULL ,
-       observed varchar (1000) NULL ,
-       sub_het_se_sq real NULL ,
-       subpop_id SERIAL NOT NULL 
-)
-;
-
-CREATE TABLE SubPopAllele (
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       allele char (1) NOT NULL ,
-       other varchar (255) NULL ,
-       freq real NULL ,
-       cnt_int int NULL ,
-       freq_min real NULL ,
-       freq_max real NULL ,
-       data_src varchar (6) NULL ,
-       type char (3) NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       allele_flag smallint NULL ,
-       cnt real NULL ,
-       allele_id int NULL ,
-       subpop_id int NOT NULL 
-)
-;
-
-CREATE TABLE SubPopGty (
-       subpop_id int NOT NULL ,
-       gty_id int NOT NULL ,
-       gty_str varchar (255) NULL ,
-       cnt real NULL ,
-       freq real NULL ,
-       last_updated_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE SubSNP (
-       subsnp_id int NOT NULL ,
-       known_snp_handle varchar (20) NULL ,
-       known_snp_loc_id varchar (64) NULL ,
-       known_snp_loc_id_upp varchar (64) NULL ,
-       batch_id int NOT NULL ,
-       loc_snp_id varchar (64) NULL ,
-       loc_snp_id_upp varchar (64) NULL ,
-       synonym_names varchar (255) NULL ,
-       loc_sts_id varchar (64) NULL ,
-       loc_sts_id_upp varchar (64) NULL ,
-       segregate char (1) NOT NULL ,
-       indiv_homozygosity_detected char (1) NULL ,
-       PCR_confirmed_ind char (1) NULL ,
-       gene_name varchar (64) NULL ,
-       sequence_len int NULL ,
-       samplesize int NULL ,
-       EXPRESSED_SEQUENCE_ind char (1) NULL ,
-       SOMATIC_ind char (1) NULL ,
-       sub_locus_id int NULL ,
-       create_time TIMESTAMP NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       ancestral_allele varchar (255) NULL ,
-       CpG_code smallint NULL ,
-       variation_id int NULL ,
-       top_or_bot_strand char (1) NULL ,
-       validation_status smallint NULL ,
-       snp_id int NULL ,
-       tax_id int NOT NULL ,
-       chr_id smallint NULL 
-)
-;
-
-CREATE TABLE SubSNPAcc_ins (
-       subsnp_id int NOT NULL ,
-       acc_type_ind char (1) NOT NULL ,
-       acc_part varchar (16) NOT NULL ,
-       acc_ver int NULL 
-)
-;
-
-CREATE TABLE SubSNPCommLine_ins (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPHGVS (
-       subsnp_id int NOT NULL ,
-       sub_hgvs_c varchar (32) NULL ,
-       sub_hgvs_g varchar (32) NULL ,
-       sub_hgvs_p varchar (32) NULL ,
-       cal_hgvs_c varchar (32) NULL ,
-       cal_hgvs_g varchar (32) NULL ,
-       cal_hgvs_p varchar (32) NULL ,
-       upd_time TIMESTAMP NULL ,
-       gene_id int NULL 
-)
-;
-
-CREATE TABLE SubSNPLinkout (
-       subsnp_id int NOT NULL ,
-       url_val varchar (255) NOT NULL ,
-       updated_time TIMESTAMP NULL ,
-       link_type varchar (3) DEFAULT 'NA' NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPMdFailLn (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPNoVariSeq (
-       subsnp_id int NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPOmim (
-       subsnp_id int NOT NULL ,
-       omim_id int NOT NULL ,
-       allele_variant_id varchar (32) NULL ,
-       update_time TIMESTAMP NULL ,
-       mutObsCount int NULL 
-)
-;
-
-CREATE TABLE SubSNPPubmed (
-       subsnp_id int NOT NULL ,
-       line_num int NOT NULL ,
-       pubmed_id int NOT NULL ,
-       updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq3_ins (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeq5_ins (
-       subsnp_id int NOT NULL ,
-       type smallint NOT NULL ,
-       line_num smallint NOT NULL ,
-       line varchar (255) NOT NULL 
-)
-;
-
-CREATE TABLE SubSNPSeqPos (
-       subsnp_id int NOT NULL ,
-       contig_acc varchar (20) NOT NULL ,
-       contig_pos int NOT NULL ,
-       chr varchar (2) NULL ,
-       upstream_len int NOT NULL ,
-       downstream_len int NOT NULL ,
-       last_update_time TIMESTAMP NOT NULL ,
-       mrna_acc varchar (24) NULL 
-)
-;
-
-CREATE TABLE SubSNP_top_or_bot (
-       subsnp_id int NOT NULL ,
-       top_or_bot char (1) NULL ,
-       step smallint NULL ,
-       last_updated_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE SubmittedIndividual (
-       submitted_ind_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       loc_ind_id_upp varchar (64) NOT NULL ,
-       ind_id int NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       last_updated_time TIMESTAMP NULL ,
-       tax_id int NOT NULL ,
-       loc_ind_alias varchar (64) NULL ,
-       loc_ind_id varchar (64) NULL ,
-       loc_ind_grp varchar (64) NULL ,
-       ploidy smallint DEFAULT 2 NULL 
-)
-;
-
-CREATE TABLE Synonym (
-       subsnp_id int NOT NULL ,
-       type varchar (64) NOT NULL ,
-       name varchar (64) NULL 
-)
-;
-
-CREATE TABLE b132_ContigInfo_37_1 (
-       ctg_id int NOT NULL ,
-       tax_id int NOT NULL ,
-       contig_acc varchar (32) NOT NULL ,
-       contig_ver smallint NULL ,
-       contig_name varchar (32) NOT NULL ,
-       contig_chr varchar (32) NULL ,
-       contig_start int NULL ,
-       contig_end int NULL ,
-       orient smallint NULL ,
-       contig_gi int NULL ,
-       group_term varchar (32) NULL ,
-       group_label varchar (32) NULL ,
-       contig_label varchar (32) NULL ,
-       build_id int NULL ,
-       build_ver int NULL ,
-       last_updated_time TIMESTAMP NOT NULL ,
-       placement_status smallint NOT NULL 
-)
-;
-
-CREATE TABLE b132_GenomeAssemblyInfo_37_1 (
-       assembly varchar (32) NOT NULL ,
-       assembly_type varchar (8) NOT NULL ,
-       rep_order smallint NULL ,
-       comment varchar (255) NULL ,
-       upd_time TIMESTAMP NULL 
-)
-;
-
-CREATE TABLE b132_MapLinkInfo_37_1 (
-       gi int NULL ,
-       accession varchar (127) NULL ,
-       accession_ver int NULL 
-)
-;
-
-CREATE TABLE b132_MapLink_37_1 (
-       snp_type char (2) NOT NULL ,
-       snp_id int NULL ,
-       gi int NOT NULL ,
-       accession_how_cd int NULL ,
-       "offset" int NULL ,
-       asn_to int NULL ,
-       lf_ngbr int NULL ,
-       rf_ngbr int NULL ,
-       lc_ngbr int NULL ,
-       rc_ngbr int NULL ,
-       loc_type smallint NULL ,
-       build_id int NULL ,
-       process_time TIMESTAMP NULL ,
-       process_status int NULL ,
-       orientation int NULL ,
-       allele varchar (1024) NULL ,
-       aln_quality float NULL ,
-       num_mism int NULL ,
-       num_ins int NULL ,
-       num_del int NULL ,
-       tier int NULL ,
-       ctg_gi int NULL ,
-       ctg_from int NULL ,
-       ctg_to int NULL ,
-       ctg_orient smallint NULL ,
-       source varchar (5) NOT NULL 
-)
-;
-
-CREATE TABLE b132_ProteinInfo_37_1 (
-       prot_gi int NULL ,
-       prot_acc varchar (128) NULL ,
-       prot_ver int NULL 
-)
-;
-
-CREATE TABLE b132_SNPChrPosOnRef_37_1 (
-       snp_id int NULL ,
-       chr varchar (32) NULL ,
-       pos int NULL ,
-       orien int NULL ,
-       neighbor_snp_list int NULL ,
-       isPAR varchar (1) NOT NULL 
-)
-;
-
-CREATE TABLE b132_SNPContigLoc_37_1 (
-       snp_type char (2) NOT NULL ,
-       snp_id int NOT NULL ,
-       ctg_id int NOT NULL ,
-       asn_from int NOT NULL ,
-       asn_to int NOT NULL ,
-       lf_ngbr int NULL ,
-       rf_ngbr int NULL ,
-       lc_ngbr int NOT NULL ,
-       rc_ngbr int NOT NULL ,
-       loc_type smallint NOT NULL ,
-       phys_pos_from int NULL ,
-       snp_bld_id int NOT NULL ,
-       last_updated_time TIMESTAMP NOT NULL ,
-       process_status int NOT NULL ,
-       orientation smallint NULL ,
-       allele varchar (1024) NULL ,
-       loc_sts_uid int NULL ,
-       aln_quality float NULL ,
-       num_mism int NULL ,
-       num_del int NULL ,
-       num_ins int NULL ,
-       tier smallint NULL 
-)
-;
-
-CREATE TABLE b132_SNPContigLocusId_37_1 (
-       snp_id int NULL ,
-       contig_acc varchar (32) NULL ,
-       contig_ver smallint NULL ,
-       asn_from int NULL ,
-       asn_to int NULL ,
-       locus_id int NULL ,
-       locus_symbol varchar (128) NULL ,
-       mrna_acc varchar (128) NULL ,
-       mrna_ver int NULL ,
-       protein_acc varchar (128) NULL ,
-       protein_ver int NULL ,
-       fxn_class int NULL ,
-       reading_frame int NULL ,
-       allele varchar (256) NULL ,
-       residue varchar (1024) NULL ,
-       aa_position int NULL ,
-       build_id varchar (4) NOT NULL ,
-       ctg_id int NULL ,
-       mrna_start int NULL ,
-       mrna_stop int NULL ,
-       codon varchar (1024) NULL ,
-       protRes char (3) NULL ,
-       contig_gi int NULL ,
-       mrna_gi int NULL ,
-       mrna_orien smallint NULL ,
-       cp_mrna_ver int NULL ,
-       cp_mrna_gi int NULL ,
-       verComp varchar (7) NOT NULL 
-)
-;
-
-CREATE TABLE b132_SNPMapInfo_37_1 (
-       snp_type char (2) NOT NULL ,
-       snp_id int NOT NULL ,
-       chr_cnt int NOT NULL ,
-       contig_cnt int NOT NULL ,
-       loc_cnt int NOT NULL ,
-       weight int NOT NULL ,
-       hap_cnt int NOT NULL ,
-       placed_cnt int NOT NULL ,
-       grouped_cnt int NOT NULL ,
-       unplaced_cnt int NOT NULL ,
-       md5 char (32) NULL ,
-       assembly varchar (32) NULL 
-)
-;
-
-CREATE TABLE dn_IND_batchCount (
-       batch_id int NOT NULL ,
-       pop_id int NOT NULL ,
-       ss_cnt int NOT NULL ,
-       rs_cnt int NOT NULL ,
-       ind_cnt int NOT NULL ,
-       create_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE dn_IND_batch_pop (
-       batch_id smallint NOT NULL ,
-       pop_id int NOT NULL ,
-       update_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE dn_PopulationIndGrp (
-       pop_id int NOT NULL ,
-       ind_grp_name varchar (32) NOT NULL ,
-       ind_grp_code smallint NOT NULL 
-)
-;
-
-CREATE TABLE dn_batchCount (
-       batch_id int NOT NULL ,
-       ss_cnt int NOT NULL ,
-       rs_cnt int NOT NULL ,
-       rs_validated_cnt int NOT NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       pop_cnt int NULL ,
-       ind_cnt int NULL 
-)
-;
-
-CREATE TABLE dn_handleCount (
-       handle varchar (20) NOT NULL ,
-       batch_type char (3) NOT NULL ,
-       ss_cnt int NOT NULL ,
-       rs_cnt int NULL ,
-       rs_validated_cnt int NULL ,
-       create_time TIMESTAMP NOT NULL 
-)
-;
-
-CREATE TABLE dn_snpFxnCnt (
-       build_id int NOT NULL ,
-       fxn_class smallint NULL ,
-       snp_cnt int NOT NULL ,
-       gene_cnt int NOT NULL ,
-       create_time TIMESTAMP NOT NULL ,
-       last_updated_time TIMESTAMP NOT NULL ,
-       tax_id int NOT NULL 
-)
-;
-
-CREATE TABLE dn_table_rowcount (
-       tabname varchar (64) NOT NULL ,
-       row_cnt int NOT NULL ,
-       build_id int NOT NULL ,
-       update_time TIMESTAMP NOT NULL ,
-       rows_in_spaceused int NULL ,
-       reserved_KB_spaceused int NULL ,
-       data_KB_spaceused int NULL ,
-       index_size_KB_spaceused int NULL ,
-       unused_KB_spaceused int NULL 
-)
-;
-
+CREATE TABLE AlleleFreqBySsPop
+(
+subsnp_id int NOT NULL ,
+pop_id int NOT NULL ,
+allele_id int NOT NULL ,
+source varchar(2) NOT NULL ,
+cnt real NULL ,
+freq real NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE Batch
+(
+batch_id int NOT NULL ,
+handle varchar(20) NOT NULL ,
+loc_batch_id varchar(64) NOT NULL ,
+loc_batch_id_upp varchar(64) NOT NULL ,
+batch_type char(3) NOT NULL ,
+status smallint NULL ,
+simul_sts_status smallint NOT NULL ,
+moltype varchar(8) NOT NULL ,
+method_id int NOT NULL ,
+samplesize int NULL ,
+synonym_type varchar(255) NULL ,
+submitted_time TIMESTAMP NOT NULL ,
+linkout_url varchar(255) NULL ,
+pop_id int NULL ,
+last_updated_time TIMESTAMP NULL ,
+success_rate_int int NULL ,
+build_id int NULL ,
+tax_id int NOT NULL ,
+ss_cnt int NULL
+);
+CREATE TABLE BatchCita
+(
+batch_id int NOT NULL ,
+position int NOT NULL ,
+pub_id int NOT NULL ,
+citation varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE BatchCommLine
+(
+batch_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE BatchCultivar
+(
+batch_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE BatchMeExLine
+(
+batch_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE BatchStrain
+(
+batch_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE BatchValCode
+(
+batch_id int NOT NULL ,
+validation_status smallint NOT NULL
+);
+CREATE TABLE ClinSigCode
+(
+code int NOT NULL ,
+abbrev varchar(64) NULL ,
+descrip varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE Contact
+(
+batch_id int NOT NULL ,
+handle varchar(20) NOT NULL ,
+name varchar(255) NOT NULL ,
+fax varchar(255) NULL ,
+phone varchar(255) NULL ,
+email varchar(255) NULL ,
+lab varchar(255) NULL ,
+institution varchar(255) NULL ,
+address varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE FreqSummaryBySsPop
+(
+subsnp_id int NOT NULL ,
+pop_id int NOT NULL ,
+source varchar(1) NOT NULL ,
+chr_cnt float NULL ,
+ind_cnt float NULL ,
+non_founder_ind_cnt int NOT NULL ,
+chisq float NULL ,
+df int NULL ,
+hwp float NOT NULL ,
+het int NULL ,
+het_se int NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE GeneIdToName
+(
+gene_id int NOT NULL ,
+gene_symbol varchar(64) NOT NULL ,
+gene_name varchar(255) NULL ,
+gene_type varchar(255) NULL ,
+tax_id int NOT NULL ,
+last_update_time TIMESTAMP NOT NULL ,
+ref_tax_id int NOT NULL ,
+dbSNP_tax_id int NOT NULL ,
+ins_time TIMESTAMP NULL
+);
+CREATE TABLE GtyFreqBySsPop
+(
+subsnp_id int NOT NULL ,
+pop_id int NOT NULL ,
+unigty_id int NOT NULL ,
+source varchar(1) NULL ,
+cnt real NULL ,
+freq real NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE IndGrpCode
+(
+code smallint NOT NULL ,
+name varchar(32) NOT NULL ,
+descrip varchar(255) NOT NULL
+);
+CREATE TABLE IndivBySource
+(
+ind_id int NOT NULL ,
+src_id int NOT NULL ,
+src_ind_id varchar(64) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+src_ind_grp varchar(64) NULL
+);
+CREATE TABLE IndivSourceCode
+(
+code int NOT NULL ,
+name varchar(22) NOT NULL ,
+descrip varchar(255) NULL ,
+create_time TIMESTAMP NOT NULL ,
+src_type varchar(10) NULL ,
+display_order smallint NULL
+);
+CREATE TABLE Individual
+(
+ind_id int NOT NULL ,
+descrip varchar(255) NULL ,
+create_time TIMESTAMP NOT NULL ,
+tax_id int NULL ,
+ind_grp smallint NULL
+);
+CREATE TABLE OmimVarLocusIdSNP
+(
+omim_id int NOT NULL ,
+locus_id int NULL ,
+omimvar_id char(4) NULL ,
+locus_symbol char(10) NULL ,
+var1 char(20) NULL ,
+aa_position int NULL ,
+var2 char(20) NULL ,
+var_class int NOT NULL ,
+snp_id int NOT NULL
+);
+CREATE TABLE Pedigree
+(
+ped_id numeric NOT NULL ,
+curator varchar(12) NOT NULL ,
+curator_ped_id varchar(12) NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE PedigreeIndividual
+(
+ped_id decimal NOT NULL ,
+ind_id int NOT NULL ,
+ma_ind_id int NULL ,
+pa_ind_id int NULL ,
+sex char(1) NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE PopLine
+(
+pop_id int NOT NULL ,
+line_num int NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE PopMandLine
+(
+pop_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE Population
+(
+pop_id int NOT NULL ,
+handle varchar(20) NOT NULL ,
+loc_pop_id varchar(64) NOT NULL ,
+loc_pop_id_upp varchar(64) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL ,
+src_id int NULL
+);
+CREATE TABLE RsMergeArch
+(
+rsHigh int NULL ,
+rsLow int NULL ,
+build_id int NULL ,
+orien smallint NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+rsCurrent int NULL ,
+orien2Current smallint NULL ,
+comment varchar(255) NULL
+);
+CREATE TABLE SNP
+(
+snp_id int NULL ,
+avg_heterozygosity real NULL ,
+het_se real NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL ,
+CpG_code smallint NULL ,
+tax_id int NULL ,
+validation_status smallint NULL ,
+exemplar_subsnp_id int NULL ,
+univar_id int NULL ,
+cnt_subsnp int NULL ,
+map_property smallint NULL
+);
+CREATE TABLE SNP3D
+(
+snp_id int NOT NULL ,
+protein_acc char(50) NOT NULL ,
+master_gi int NOT NULL ,
+neighbor_gi int NOT NULL ,
+aa_position int NOT NULL ,
+var_res char(1) NOT NULL ,
+contig_res char(1) NOT NULL ,
+neighbor_res char(1) NOT NULL ,
+neighbor_pos int NOT NULL ,
+var_color int NOT NULL ,
+var_label int NOT NULL
+);
+CREATE TABLE SNPAlleleFreq
+(
+snp_id int NOT NULL ,
+allele_id int NOT NULL ,
+chr_cnt float NULL ,
+freq float NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SNPAlleleFreq_TGP
+(
+snp_id int NOT NULL ,
+allele_id int NOT NULL ,
+freq float NULL ,
+count int NULL ,
+is_minor_allele bit NULL
+);
+CREATE TABLE SNPAncestralAllele
+(
+snp_id int NOT NULL ,
+ancestral_allele_id int NOT NULL ,
+batch_id int NOT NULL
+);
+CREATE TABLE SNPClinSig
+(
+snp_id int NOT NULL ,
+clin_sig_id int NULL ,
+upd_time TIMESTAMP NULL ,
+clin_test_code varchar(16) NULL
+);
+CREATE TABLE SNPGtyFreq
+(
+snp_id int NOT NULL ,
+unigty_id int NOT NULL ,
+ind_cnt float NULL ,
+freq float NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SNPHWProb
+(
+snp_id int NOT NULL ,
+df smallint NULL ,
+chisq real NULL ,
+hwp real NULL ,
+ind_cnt smallint NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE SNPHistory
+(
+snp_id int NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+history_create_time TIMESTAMP NULL ,
+comment varchar(255) NULL ,
+reactivated_time TIMESTAMP NULL
+);
+CREATE TABLE SNPPubmed
+(
+snp_id int NULL ,
+subsnp_id int NOT NULL ,
+pubmed_id int NULL ,
+type varchar(9) NOT NULL ,
+score int NOT NULL ,
+upd_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SNPSubSNPLink
+(
+subsnp_id int NULL ,
+snp_id int NULL ,
+substrand_reversed_flag smallint NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL ,
+build_id int NULL ,
+comment varchar(255) NULL
+);
+CREATE TABLE SNPSubSNPLinkHistory
+(
+subsnp_id int NULL ,
+snp_id int NULL ,
+build_id int NULL ,
+history_create_time TIMESTAMP NOT NULL ,
+link_create_time TIMESTAMP NULL ,
+link_last_updated_time TIMESTAMP NULL ,
+orien smallint NULL ,
+build_id_when_history_made int NULL ,
+comment varchar(255) NULL
+);
+CREATE TABLE SNPSuspect
+(
+snp_id int NOT NULL ,
+reason_code int NULL ,
+upd_time TIMESTAMP NULL
+);
+CREATE TABLE dbo.SuspectReasonCode(
+                code int NOT NULL,
+                abbrev varchar(64) NULL,
+                descrip varchar(255) NULL,
+                create_time TIMESTAMP NULL,
+                last_update_time TIMESTAMP NULL,
+PRIMARY KEY (
+                code)WITH (PAD_INDEX  = OFF, STATISTICS_NORECOMPUTE  = OFF, IGNORE_DUP_KEY = OFF, ALLOW_ROW_LOCKS  = ON, ALLOW_PAGE_LOCKS  = ON) ON PRIMARY
+) ON PRIMARY
+CREATE TABLE SNPVal
+(
+batch_id int NOT NULL ,
+snp_id int NOT NULL
+);
+CREATE TABLE SNP_HGVS
+(
+snp_id int NULL ,
+hgvs_name varchar(4000) NULL ,
+source varchar(3) NOT NULL ,
+upd_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SNP_bitfield
+(
+snp_id int NOT NULL ,
+ver_code smallint NULL ,
+link_prop_b1 smallint NULL ,
+link_prop_b2 smallint NULL ,
+gene_prop_b1 smallint NULL ,
+gene_prop_b2 smallint NULL ,
+map_prop smallint NULL ,
+freq_prop smallint NULL ,
+gty_prop smallint NULL ,
+hapmap_prop smallint NULL ,
+pheno_prop smallint NULL ,
+variation_class smallint NOT NULL ,
+quality_check smallint NULL ,
+upd_time TIMESTAMP NOT NULL ,
+encoding bytea NULL
+);
+CREATE TABLE SubPop
+(
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+pop_id int NOT NULL ,
+type char(3) NOT NULL ,
+samplesize int NOT NULL ,
+submitted_strand_code smallint NULL ,
+submitted_rs int NULL ,
+allele_flag smallint NULL ,
+ambiguity_status smallint NULL ,
+sub_heterozygosity real NULL ,
+est_heterozygosity real NULL ,
+est_het_se_sq real NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+observed varchar(1000) NULL ,
+sub_het_se_sq real NULL ,
+subpop_id SERIAL NOT NULL
+);
+CREATE TABLE SubPopAllele
+(
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+pop_id int NOT NULL ,
+allele char(1) NOT NULL ,
+other varchar(255) NULL ,
+freq real NULL ,
+cnt_int int NULL ,
+freq_min real NULL ,
+freq_max real NULL ,
+data_src varchar(6) NULL ,
+type char(3) NULL ,
+last_updated_time TIMESTAMP NULL ,
+allele_flag smallint NULL ,
+cnt real NULL ,
+allele_id int NULL ,
+subpop_id int NOT NULL
+);
+CREATE TABLE SubPopGty
+(
+subpop_id int NOT NULL ,
+gty_id int NOT NULL ,
+gty_str varchar(255) NULL ,
+cnt real NULL ,
+freq real NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SubSNP
+(
+subsnp_id int NOT NULL ,
+known_snp_handle varchar(20) NULL ,
+known_snp_loc_id varchar(64) NULL ,
+known_snp_loc_id_upp varchar(64) NULL ,
+batch_id int NOT NULL ,
+loc_snp_id varchar(64) NULL ,
+loc_snp_id_upp varchar(64) NULL ,
+synonym_names varchar(255) NULL ,
+loc_sts_id varchar(64) NULL ,
+loc_sts_id_upp varchar(64) NULL ,
+segregate char(1) NOT NULL ,
+indiv_homozygosity_detected char(1) NULL ,
+PCR_confirmed_ind char(1) NULL ,
+gene_name varchar(64) NULL ,
+sequence_len int NULL ,
+samplesize int NULL ,
+EXPRESSED_SEQUENCE_ind char(1) NULL ,
+SOMATIC_ind char(1) NULL ,
+sub_locus_id int NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL ,
+ancestral_allele varchar(255) NULL ,
+CpG_code smallint NULL ,
+variation_id int NULL ,
+top_or_bot_strand char(1) NULL ,
+validation_status smallint NULL ,
+snp_id int NULL ,
+tax_id int NOT NULL ,
+chr_id smallint NULL
+);
+CREATE TABLE SubSNPAcc_ins
+(
+subsnp_id int NOT NULL ,
+acc_type_ind char(1) NOT NULL ,
+acc_part varchar(16) NOT NULL ,
+acc_ver int NULL
+);
+CREATE TABLE SubSNPCommLine_ins
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPHGVS
+(
+subsnp_id int NOT NULL ,
+sub_hgvs_c varchar(32) NULL ,
+sub_hgvs_g varchar(64) NULL ,
+sub_hgvs_p varchar(32) NULL ,
+cal_hgvs_c varchar(32) NULL ,
+cal_hgvs_g varchar(32) NULL ,
+cal_hgvs_p varchar(32) NULL ,
+upd_time TIMESTAMP NULL ,
+gene_id int NULL
+);
+CREATE TABLE SubSNPLinkout
+(
+subsnp_id int NOT NULL ,
+url_val varchar(255) NOT NULL ,
+updated_time TIMESTAMP NULL ,
+link_type varchar(3) NOT NULL
+);
+CREATE TABLE SubSNPMdFailLn
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPNoVariSeq
+(
+subsnp_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPOmim
+(
+subsnp_id int NOT NULL ,
+omim_id int NOT NULL ,
+allele_variant_id varchar(32) NULL ,
+update_time TIMESTAMP NULL ,
+mutObsCount int NULL
+);
+CREATE TABLE SubSNPPubmed
+(
+subsnp_id int NOT NULL ,
+line_num int NOT NULL ,
+pubmed_id int NOT NULL ,
+updated_time TIMESTAMP NULL
+);
+CREATE TABLE SubSNPSeq3_ins
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeq5_ins
+(
+subsnp_id int NOT NULL ,
+type smallint NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL
+);
+CREATE TABLE SubSNPSeqPos
+(
+subsnp_id int NOT NULL ,
+contig_acc varchar(20) NOT NULL ,
+contig_pos int NOT NULL ,
+chr varchar(2) NULL ,
+upstream_len int NOT NULL ,
+downstream_len int NOT NULL ,
+last_update_time TIMESTAMP NOT NULL ,
+mrna_acc varchar(24) NULL
+);
+CREATE TABLE SubSNP_top_or_bot
+(
+subsnp_id int NOT NULL ,
+top_or_bot char(1) NULL ,
+step smallint NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE SubmittedIndividual
+(
+submitted_ind_id int NOT NULL ,
+pop_id int NOT NULL ,
+loc_ind_id_upp varchar(64) NOT NULL ,
+ind_id int NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NULL ,
+tax_id int NOT NULL ,
+loc_ind_alias varchar(64) NULL ,
+loc_ind_id varchar(64) NULL ,
+loc_ind_grp varchar(64) NULL ,
+ploidy smallint NULL
+);
+CREATE TABLE Synonym
+(
+subsnp_id int NOT NULL ,
+type varchar(64) NOT NULL ,
+name varchar(64) NULL
+);
+CREATE TABLE b135_ContigInfo_37_3
+(
+ctg_id int NOT NULL ,
+tax_id int NOT NULL ,
+contig_acc varchar(32) NOT NULL ,
+contig_ver smallint NOT NULL ,
+contig_name varchar(63) NULL ,
+contig_chr varchar(32) NULL ,
+contig_start int NULL ,
+contig_end int NULL ,
+orient smallint NULL ,
+contig_gi int NOT NULL ,
+group_term varchar(32) NULL ,
+group_label varchar(32) NULL ,
+contig_label varchar(32) NULL ,
+build_id int NOT NULL ,
+build_ver int NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+placement_status smallint NOT NULL ,
+asm_acc varchar(32) NULL ,
+asm_version smallint NULL ,
+chr_gi int NULL ,
+par_fl smallint NULL ,
+top_level_fl smallint NOT NULL ,
+gen_rgn varchar(32) NULL
+);
+CREATE TABLE b135_MapLinkHGVS_37_3
+(
+snp_type char(2) NOT NULL ,
+snp_id int NULL ,
+gi int NULL ,
+accession_how_cd int NOT NULL ,
+offset int NULL ,
+asn_to int NULL ,
+lf_ngbr int NULL ,
+rf_ngbr int NULL ,
+lc_ngbr int NULL ,
+rc_ngbr int NULL ,
+loc_type smallint NULL ,
+build_id int NULL ,
+process_time TIMESTAMP NULL ,
+process_status int NOT NULL ,
+orientation smallint NULL ,
+allele varchar(255) NULL ,
+aln_quality real NULL ,
+num_mism int NULL ,
+num_del int NULL ,
+num_ins int NULL ,
+tier smallint NULL ,
+ctg_gi int NULL ,
+ctg_from int NULL ,
+ctg_to int NULL ,
+ctg_orient smallint NULL
+);
+CREATE TABLE b135_MapLinkInfo_37_3
+(
+gi int NOT NULL ,
+accession varchar(32) NOT NULL ,
+accession_ver smallint NOT NULL ,
+acc varchar(32) NOT NULL ,
+version smallint NOT NULL ,
+status varchar(32) NULL ,
+create_dt TIMESTAMP NULL ,
+update_dt TIMESTAMP NULL ,
+cds_from int NULL ,
+cds_to int NULL
+);
+CREATE TABLE b135_MapLink_37_3
+(
+snp_type char(2) NOT NULL ,
+snp_id int NULL ,
+gi int NULL ,
+accession_how_cd int NULL ,
+offset int NULL ,
+asn_to int NULL ,
+lf_ngbr int NULL ,
+rf_ngbr int NULL ,
+lc_ngbr int NULL ,
+rc_ngbr int NULL ,
+loc_type smallint NOT NULL ,
+build_id int NULL ,
+process_time TIMESTAMP NOT NULL ,
+process_status int NOT NULL ,
+orientation smallint NULL ,
+allele varchar(1024) NULL ,
+aln_quality real NULL ,
+num_mism int NULL ,
+num_ins int NULL ,
+num_del int NULL ,
+tier smallint NULL ,
+ctg_gi int NULL ,
+ctg_from int NULL ,
+ctg_to int NULL ,
+ctg_orient smallint NULL ,
+source varchar(5) NOT NULL
+);
+CREATE TABLE b135_ProteinInfo_37_3
+(
+gi int NOT NULL ,
+acc varchar(32) NOT NULL ,
+version smallint NOT NULL ,
+prot_gi int NOT NULL ,
+prot_acc varchar(32) NOT NULL ,
+prot_ver smallint NOT NULL ,
+status varchar(32) NULL ,
+create_dt TIMESTAMP NULL ,
+update_dt TIMESTAMP NULL
+);
+CREATE TABLE b135_Remapped_37_3
+(
+snp_type char(2) NOT NULL ,
+snp_id int NULL ,
+src_gi int NOT NULL ,
+src_from int NOT NULL ,
+src_to int NOT NULL ,
+src_l_ngbr int NOT NULL ,
+src_r_ngbr int NOT NULL ,
+src_orientation smallint NULL ,
+src_aln_quality real NULL ,
+tgt_gi int NULL ,
+tgt_from int NULL ,
+tgt_to int NULL ,
+tgt_l_ngbr int NULL ,
+tgt_r_ngbr int NULL ,
+tgt_loc_type smallint NOT NULL ,
+tgt_orientation smallint NULL ,
+tgt_allele varchar(1024) NULL ,
+tgt_aln_quality real NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+comment varchar(255) NULL
+);
+CREATE TABLE b135_SNPChrPosOnRef_37_3
+(
+snp_id int NOT NULL ,
+chr varchar(32) NOT NULL ,
+pos int NULL ,
+orien int NULL ,
+neighbor_snp_list int NULL ,
+isPAR varchar(1) NOT NULL
+);
+CREATE TABLE b135_SNPContigLoc_37_3
+(
+snp_type char(2) NOT NULL ,
+snp_id int NOT NULL ,
+ctg_id int NOT NULL ,
+asn_from int NOT NULL ,
+asn_to int NOT NULL ,
+lf_ngbr int NULL ,
+rf_ngbr int NULL ,
+lc_ngbr int NOT NULL ,
+rc_ngbr int NOT NULL ,
+loc_type smallint NOT NULL ,
+phys_pos_from int NULL ,
+snp_bld_id int NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+process_status smallint NOT NULL ,
+orientation smallint NULL ,
+allele varchar(1024) NULL ,
+loc_sts_uid int NULL ,
+aln_quality real NULL ,
+num_mism int NULL ,
+num_del int NULL ,
+num_ins int NULL ,
+tier smallint NULL
+);
+CREATE TABLE b135_SNPContigLocusId_37_3
+(
+snp_id int NOT NULL ,
+contig_acc varchar(32) NULL ,
+contig_ver smallint NULL ,
+asn_from int NULL ,
+asn_to int NULL ,
+locus_id int NULL ,
+locus_symbol varchar(128) NULL ,
+mrna_acc varchar(32) NOT NULL ,
+mrna_ver smallint NOT NULL ,
+protein_acc varchar(32) NULL ,
+protein_ver smallint NULL ,
+fxn_class int NOT NULL ,
+reading_frame int NULL ,
+allele varchar(256) NULL ,
+residue varchar(1024) NULL ,
+aa_position int NULL ,
+build_id varchar(4) NOT NULL ,
+ctg_id int NULL ,
+mrna_start int NULL ,
+mrna_stop int NULL ,
+codon varchar(1024) NULL ,
+protRes char(3) NULL ,
+contig_gi int NULL ,
+mrna_gi int NOT NULL ,
+mrna_orien smallint NULL ,
+cp_mrna_ver smallint NULL ,
+cp_mrna_gi int NULL ,
+verComp varchar(7) NULL
+);
+CREATE TABLE b135_SNPContigProtein_37_3
+(
+snp_id int NOT NULL ,
+contig_gi int NOT NULL ,
+contig_start int NOT NULL ,
+contig_stop int NOT NULL ,
+contig_orien smallint NOT NULL ,
+contig_allele varchar(1024) NULL ,
+mrna_gi int NOT NULL ,
+mrna_acc varchar(32) NOT NULL ,
+mrna_ver smallint NOT NULL ,
+mrna_start int NULL ,
+mrna_stop int NULL ,
+mrna_orien smallint NULL ,
+gene_symbol varchar(128) NULL ,
+gene_id int NULL ,
+prot_gi int NULL ,
+prot_acc varchar(32) NULL ,
+prot_ver smallint NULL ,
+prot_start int NULL ,
+prot_stop int NULL ,
+frame smallint NULL ,
+var_allele varchar(1024) NULL ,
+residue varchar(1024) NULL ,
+mrna_codon varchar(1024) NULL ,
+codon varchar(1024) NULL ,
+fxn_class int NOT NULL ,
+in_stop_codon smallint NULL
+);
+CREATE TABLE b135_SNPMapInfo_37_3
+(
+snp_type char(2) NOT NULL ,
+snp_id int NOT NULL ,
+chr_cnt int NOT NULL ,
+contig_cnt int NOT NULL ,
+loc_cnt int NOT NULL ,
+weight int NOT NULL ,
+hap_cnt int NULL ,
+placed_cnt int NOT NULL ,
+unlocalized_cnt int NOT NULL ,
+unplaced_cnt int NOT NULL ,
+aligned_cnt int NOT NULL ,
+md5 char(32) NULL ,
+asm_acc varchar(32) NULL ,
+asm_version smallint NULL ,
+assembly varchar(32) NULL
+);
+CREATE TABLE b135_SNPMapLinkProtein_37_3
+(
+snp_id int NOT NULL ,
+mrna_acc varchar(32) NOT NULL ,
+mrna_ver smallint NOT NULL ,
+mrna_gi int NOT NULL ,
+mrna_start int NULL ,
+mrna_stop int NULL ,
+mrna_orien smallint NULL ,
+allele varchar(1024) NULL ,
+gene_symbol varchar(128) NULL ,
+gene_id int NULL ,
+prot_gi int NULL ,
+prot_acc varchar(32) NULL ,
+prot_ver smallint NULL ,
+prot_start int NULL ,
+prot_stop int NULL ,
+frame smallint NULL ,
+var_allele varchar(1024) NULL ,
+residue varchar(1024) NULL ,
+mrna_codon varchar(1024) NULL ,
+codon varchar(1024) NULL ,
+fxn_class int NOT NULL ,
+ctg_gi int NULL ,
+ctg_from int NULL ,
+ctg_to int NULL ,
+ctg_orientation smallint NULL ,
+source varchar(7) NULL
+);
+CREATE TABLE dn_IND_batchCount
+(
+batch_id int NOT NULL ,
+pop_id int NOT NULL ,
+ss_cnt int NOT NULL ,
+rs_cnt int NOT NULL ,
+ind_cnt int NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE dn_IND_batch_pop
+(
+batch_id smallint NOT NULL ,
+pop_id int NOT NULL ,
+update_time TIMESTAMP NOT NULL
+);
+CREATE TABLE dn_PopulationIndGrp
+(
+pop_id int NOT NULL ,
+ind_grp_name varchar(32) NOT NULL ,
+ind_grp_code smallint NOT NULL
+);
+CREATE TABLE dn_batchCount
+(
+batch_id int NOT NULL ,
+ss_cnt int NOT NULL ,
+rs_cnt int NOT NULL ,
+rs_validated_cnt int NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+pop_cnt int NULL ,
+ind_cnt int NULL
+);
+CREATE TABLE dn_handleCount
+(
+handle varchar(20) NOT NULL ,
+batch_type char(3) NOT NULL ,
+ss_cnt int NOT NULL ,
+rs_cnt int NULL ,
+rs_validated_cnt int NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE dn_snpFxnCnt
+(
+build_id int NOT NULL ,
+fxn_class smallint NULL ,
+snp_cnt int NOT NULL ,
+gene_cnt int NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+tax_id int NOT NULL
+);
+CREATE TABLE dn_table_rowcount
+(
+tabname varchar(64) NOT NULL ,
+row_cnt int NOT NULL ,
+build_id int NOT NULL ,
+update_time TIMESTAMP NOT NULL ,
+rows_in_spaceused int NULL ,
+reserved_KB_spaceused int NULL ,
+data_KB_spaceused int NULL ,
+index_size_KB_spaceused int NULL ,
+unused_KB_spaceused int NULL
+);

diff --git a/schema/human_9606_schema/human_gty1_constraint.sql b/schema/human_9606_schema/human_gty1_constraint.sql
index f2a495a13dcc1c0e2f1058b8525f094a702260dd..4eca20f4e486f8efda8f25b84bc44ff442471dcc 100644 (file)
--- a/schema/human_9606_schema/human_gty1_constraint.sql
+++ b/schema/human_9606_schema/human_gty1_constraint.sql
@@ -1,78 +1,22 @@
-ALTER TABLE [SubInd_ch1] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch1] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch1] ADD CONSTRAINT [pk_ch_t_SubInd_ch1]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch2] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch2] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch2] ADD CONSTRAINT [pk_ch_t_SubInd_ch2]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch3] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch3] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch3] ADD CONSTRAINT [pk_ch_t_SubInd_ch3]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch4] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch4] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch4] ADD CONSTRAINT [pk_ch_t_SubInd_ch4]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch5] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch5] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch5] ADD CONSTRAINT [pk_ch_t_SubInd_ch5]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch6] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch6] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch6] ADD CONSTRAINT [pk_ch_t_SubInd_ch6]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch7] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch7] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch7] ADD CONSTRAINT [pk_ch_t_SubInd_ch7]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 
 GO
 
 

-

diff --git a/schema/human_9606_schema/human_gty1_constraint_postgresql.sql b/schema/human_9606_schema/human_gty1_constraint_postgresql.sql
deleted file mode 100644 (file)
index 083750b..0000000
--- a/schema/human_9606_schema/human_gty1_constraint_postgresql.sql
+++ /dev/null
@@ -1,71 +0,0 @@
-ALTER TABLE SubInd_ch1 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch1 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch2 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch2 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch3 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch3 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch4 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch4 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch5 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch5 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch6 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch6 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch7 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch7 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-

diff --git a/schema/human_9606_schema/human_gty1_index.sql b/schema/human_9606_schema/human_gty1_index.sql
index 5dd05bf316cfc745ca8b9c6913d0589ccb432cae..6eeeb7d516e3cb573b5e730e608dff67ae09af57 100644 (file)
--- a/schema/human_9606_schema/human_gty1_index.sql
+++ b/schema/human_9606_schema/human_gty1_index.sql
@@ -1,53 +1,38 @@
- CREATE  INDEX [i_bs] ON [SubInd_ch1]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch1] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch1]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch1] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch2]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch2] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch2]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch2] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch3]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch3] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch3]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch3] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch4]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch4] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch4]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch4] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch5]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch5] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch5]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch5] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch6]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch6] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch6]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch6] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch7]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch7] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch7]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch7] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  CLUSTERED  INDEX [i_b_size] ON [dn_table_rowcount]([build_id] DESC , [reserved_KB_spaceused] DESC )
+CREATE CLUSTERED INDEX [i_b_size] ON [dn_table_rowcount] ([build_id] DESC,[reserved_KB_spaceused] DESC)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/human_gty1_index_postgresql.sql b/schema/human_9606_schema/human_gty1_index_postgresql.sql
deleted file mode 100644 (file)
index 0c98d90..0000000
--- a/schema/human_9606_schema/human_gty1_index_postgresql.sql
+++ /dev/null
@@ -1,49 +0,0 @@
- CREATE  INDEX ON SubInd_ch1(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch1(submitted_ind_id, subsnp_id, gty_id)
-;
-CREATE INDEX ON SubInd_ch1(subsnp_id);
-CREATE INDEX ON SubInd_ch2(subsnp_id);
-CREATE INDEX ON SubInd_ch3(subsnp_id);
-CREATE INDEX ON SubInd_ch4(subsnp_id);
-CREATE INDEX ON SubInd_ch5(subsnp_id);
-CREATE INDEX ON SubInd_ch6(subsnp_id);
-CREATE INDEX ON SubInd_ch7(subsnp_id);
-CREATE INDEX ON SubInd_ch8(subsnp_id);
-CREATE INDEX ON SubInd_ch9(subsnp_id);
-
-
- CREATE  INDEX ON SubInd_ch2(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch2(submitted_ind_id, subsnp_id, gty_id)
-;
-
-
- CREATE  INDEX ON SubInd_ch3(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch3(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch4(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch4(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch5(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch5(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch6(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch6(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch7(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch7(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE    INDEX ON dn_table_rowcount(build_id DESC , reserved_KB_spaceused DESC )
-;
-

diff --git a/schema/human_9606_schema/human_gty1_table.sql b/schema/human_9606_schema/human_gty1_table.sql
index 4e8e9d566b72a593331f58e3ba30ab1eb56d6ac7..cd45ba248bd4b5d9ba576af00e311dc5a76d4057 100644 (file)
--- a/schema/human_9606_schema/human_gty1_table.sql
+++ b/schema/human_9606_schema/human_gty1_table.sql
@@ -1,105 +1,105 @@
-CREATE TABLE [SubInd_ch1] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch1]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch2] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch2]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch3] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch3]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch4] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch4]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch5] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch5]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch6] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch6]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch7] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch7]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [dn_table_rowcount] (
-       [tabname] [varchar] (64) NOT NULL ,
-       [row_cnt] [int] NOT NULL ,
-       [build_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL ,
-       [rows_in_spaceused] [int] NULL ,
-       [reserved_KB_spaceused] [int] NULL ,
-       [data_KB_spaceused] [int] NULL ,
-       [index_size_KB_spaceused] [int] NULL ,
-       [unused_KB_spaceused] [int] NULL 
-)
+CREATE TABLE [dn_table_rowcount]
+(
+[tabname] [varchar](64) NOT NULL ,
+[row_cnt] [int] NOT NULL ,
+[build_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL ,
+[rows_in_spaceused] [int] NULL ,
+[reserved_KB_spaceused] [int] NULL ,
+[data_KB_spaceused] [int] NULL ,
+[index_size_KB_spaceused] [int] NULL ,
+[unused_KB_spaceused] [int] NULL
+)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/human_gty1_table_postgresql.sql b/schema/human_9606_schema/human_gty1_table_postgresql.sql
deleted file mode 100644 (file)
index de00c19..0000000
--- a/schema/human_9606_schema/human_gty1_table_postgresql.sql
+++ /dev/null
@@ -1,57 +0,0 @@
-CREATE TABLE SubInd (
-       chr CHAR NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-);
-
-CREATE TABLE SubInd_ch1 CHECK (chr = '1') INHERITS SubInd;
-CREATE TABLE SubInd_ch2 CHECK (chr = '2') INHERITS SubInd;
-CREATE TABLE SubInd_ch3 CHECK (chr = '3') INHERITS SubInd;
-CREATE TABLE SubInd_ch4 CHECK (chr = '4') INHERITS SubInd;
-CREATE TABLE SubInd_ch5 CHECK (chr = '5') INHERITS SubInd;
-CREATE TABLE SubInd_ch6 CHECK (chr = '6') INHERITS SubInd;
-CREATE TABLE SubInd_ch7 CHECK (chr = '7') INHERITS SubInd;
-CREATE TABLE SubInd_ch8 CHECK (chr = '8') INHERITS SubInd;
-CREATE TABLE SubInd_ch9 CHECK (chr = '9') INHERITS SubInd;
-CREATE TABLE SubInd_ch10 CHECK (chr = '10') INHERITS SubInd;
-CREATE TABLE SubInd_ch11 CHECK (chr = '11') INHERITS SubInd;
-CREATE TABLE SubInd_ch12 CHECK (chr = '12') INHERITS SubInd;
-CREATE TABLE SubInd_ch13 CHECK (chr = '13') INHERITS SubInd;
-CREATE TABLE SubInd_ch14 CHECK (chr = '14') INHERITS SubInd;
-CREATE TABLE SubInd_ch15 CHECK (chr = '15') INHERITS SubInd;
-CREATE TABLE SubInd_ch16 CHECK (chr = '16') INHERITS SubInd;
-CREATE TABLE SubInd_ch17 CHECK (chr = '17') INHERITS SubInd;
-CREATE TABLE SubInd_ch18 CHECK (chr = '18') INHERITS SubInd;
-CREATE TABLE SubInd_ch19 CHECK (chr = '19') INHERITS SubInd;
-CREATE TABLE SubInd_ch20 CHECK (chr = '20') INHERITS SubInd;
-CREATE TABLE SubInd_ch21 CHECK (chr = '21') INHERITS SubInd;
-CREATE TABLE SubInd_ch22 CHECK (chr = '22') INHERITS SubInd;
-CREATE TABLE SubInd_chAltOnly CHECK (chr = 'AltOnly') INHERITS SubInd;
-CREATE TABLE SubInd_chMT CHECK (chr = 'MT') INHERITS SubInd;
-CREATE TABLE SubInd_chMulti CHECK (chr = 'Multi') INHERITS SubInd;
-CREATE TABLE SubInd_chNewSs CHECK (chr = 'NewSs') INHERITS SubInd;
-CREATE TABLE SubInd_chNotOn CHECK (chr = 'NotOn') INHERITS SubInd;
-CREATE TABLE SubInd_chPAR CHECK (chr = 'PAR') INHERITS SubInd;
-CREATE TABLE SubInd_chUn CHECK (chr = 'Un') INHERITS SubInd;
-CREATE TABLE SubInd_chX CHECK (chr = 'X') INHERITS SubInd;
-CREATE TABLE SubInd_chY CHECK (chr = 'Y') INHERITS SubInd;
-
-
-CREATE TABLE dn_table_rowcount (
-       tabname varchar (64) NOT NULL ,
-       row_cnt int NOT NULL ,
-       build_id int NOT NULL ,
-       update_time TIMESTAMP NOT NULL ,
-       rows_in_spaceused int NULL ,
-       reserved_KB_spaceused int NULL ,
-       data_KB_spaceused int NULL ,
-       index_size_KB_spaceused int NULL ,
-       unused_KB_spaceused int NULL 
-)
-;
-

diff --git a/schema/human_9606_schema/human_gty2_constraint.sql b/schema/human_9606_schema/human_gty2_constraint.sql
index def01ceb892e55100d1d866fe138457cbc0f615d..84802ffaead62374e379a37c473516c7896d93a9 100644 (file)
--- a/schema/human_9606_schema/human_gty2_constraint.sql
+++ b/schema/human_9606_schema/human_gty2_constraint.sql
@@ -1,265 +1,73 @@
-ALTER TABLE [SubInd_ch10] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch10] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch10] ADD CONSTRAINT [pk_ch_t_SubInd_ch10]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch11] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch11] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch11] ADD CONSTRAINT [pk_ch_t_SubInd_ch11]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch12] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch12] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch12] ADD CONSTRAINT [pk_ch_t_SubInd_ch12]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch13] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch13] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch13] ADD CONSTRAINT [pk_ch_t_SubInd_ch13]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch14] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch14] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch14] ADD CONSTRAINT [pk_ch_t_SubInd_ch14]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch15] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch15] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch15] ADD CONSTRAINT [pk_ch_t_SubInd_ch15]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch16] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch16] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch16] ADD CONSTRAINT [pk_ch_t_SubInd_ch16]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch17] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch17] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch17] ADD CONSTRAINT [pk_ch_t_SubInd_ch17]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch18] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch18] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch18] ADD CONSTRAINT [pk_ch_t_SubInd_ch18]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch19] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch19] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch19] ADD CONSTRAINT [pk_ch_t_SubInd_ch19]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch20] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch20] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch20] ADD CONSTRAINT [pk_ch_t_SubInd_ch20]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch21] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch21] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch21] ADD CONSTRAINT [pk_ch_t_SubInd_ch21]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch22] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch22] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch22] ADD CONSTRAINT [pk_ch_t_SubInd_ch22]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch8] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch8] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch8] ADD CONSTRAINT [pk_ch_t_SubInd_ch8]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_ch9] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_ch9] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_ch9] ADD CONSTRAINT [pk_ch_t_SubInd_ch9]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chAltOnly] ADD 
-       CONSTRAINT [pk_SubInd_chAltOnly] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chAltOnly] ADD CONSTRAINT [pk_SubInd_chAltOnly]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chMT] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_chMT] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chMT] ADD CONSTRAINT [pk_ch_t_SubInd_chMT]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chMulti] ADD 
-       CONSTRAINT [pk_SubInd_chMulti] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chMulti] ADD CONSTRAINT [pk_SubInd_chMulti]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chNewSs] ADD 
-       CONSTRAINT [pk_SubInd_chNewSs] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chNewSs] ADD CONSTRAINT [pk_SubInd_chNewSs]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chNotOn] ADD 
-       CONSTRAINT [pk_SubInd_chNotOn] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chNotOn] ADD CONSTRAINT [pk_SubInd_chNotOn]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chPAR] ADD 
-       CONSTRAINT [pk_SubInd_chPAR] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chPAR] ADD CONSTRAINT [pk_SubInd_chPAR]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chUn] ADD 
-       CONSTRAINT [pk_SubInd_chUn] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chUn] ADD CONSTRAINT [pk_SubInd_chUn]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chX] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_chX] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chX] ADD CONSTRAINT [pk_ch_t_SubInd_chX]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SubInd_chY] ADD 
-       CONSTRAINT [pk_ch_t_SubInd_chY] PRIMARY KEY  CLUSTERED 
-       (
-               [subsnp_id],
-               [submitted_ind_id],
-               [batch_id],
-               [chr]
-       )
+ALTER TABLE [SubInd_chY] ADD CONSTRAINT [pk_ch_t_SubInd_chY]  PRIMARY KEY  CLUSTERED ([chr] ASC,[batch_id] ASC,[subsnp_id] ASC,[submitted_ind_id] ASC)\r

 GO
 
 
 GO
 
 

-

diff --git a/schema/human_9606_schema/human_gty2_constraint_postgresql.sql b/schema/human_9606_schema/human_gty2_constraint_postgresql.sql
index 2c5b27e2b5194913b5e451dac4657c19122657e4..2b2612278878239e64aa4a50f8b6b5f2170aefae 100644 (file)
--- a/schema/human_9606_schema/human_gty2_constraint_postgresql.sql
+++ b/schema/human_9606_schema/human_gty2_constraint_postgresql.sql
@@ -1,241 +1,24 @@
-ALTER TABLE SubInd_ch10 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch10 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch11 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch11 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch12 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch12 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch13 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch13 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch14 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch14 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch15 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch15 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch16 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch16 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch17 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch17 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch18 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch18 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch19 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch19 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch20 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch20 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch21 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch21 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch22 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch22 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch8 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch8 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_ch9 ADD 
-       CONSTRAINT pk_ch_t_SubInd_ch9 PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chAltOnly ADD 
-       CONSTRAINT pk_SubInd_chAltOnly PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chMT ADD 
-       CONSTRAINT pk_ch_t_SubInd_chMT PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chMulti ADD 
-       CONSTRAINT pk_SubInd_chMulti PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chNewSs ADD 
-       CONSTRAINT pk_SubInd_chNewSs PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chNotOn ADD 
-       CONSTRAINT pk_SubInd_chNotOn PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chPAR ADD 
-       CONSTRAINT pk_SubInd_chPAR PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chUn ADD 
-       CONSTRAINT pk_SubInd_chUn PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chX ADD 
-       CONSTRAINT pk_ch_t_SubInd_chX PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-ALTER TABLE SubInd_chY ADD 
-       CONSTRAINT pk_ch_t_SubInd_chY PRIMARY KEY   
-       (
-               subsnp_id,
-               submitted_ind_id,
-               batch_id,
-               chr
-       )
-;
-
-
+ALTER TABLE SubInd_ch10 ADD CONSTRAINT pk_ch_t_SubInd_ch10  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch11 ADD CONSTRAINT pk_ch_t_SubInd_ch11  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch12 ADD CONSTRAINT pk_ch_t_SubInd_ch12  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch13 ADD CONSTRAINT pk_ch_t_SubInd_ch13  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch14 ADD CONSTRAINT pk_ch_t_SubInd_ch14  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch15 ADD CONSTRAINT pk_ch_t_SubInd_ch15  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch16 ADD CONSTRAINT pk_ch_t_SubInd_ch16  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch17 ADD CONSTRAINT pk_ch_t_SubInd_ch17  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch18 ADD CONSTRAINT pk_ch_t_SubInd_ch18  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch19 ADD CONSTRAINT pk_ch_t_SubInd_ch19  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch20 ADD CONSTRAINT pk_ch_t_SubInd_ch20  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch21 ADD CONSTRAINT pk_ch_t_SubInd_ch21  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch22 ADD CONSTRAINT pk_ch_t_SubInd_ch22  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch8 ADD CONSTRAINT pk_ch_t_SubInd_ch8  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_ch9 ADD CONSTRAINT pk_ch_t_SubInd_ch9  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chAltOnly ADD CONSTRAINT pk_SubInd_chAltOnly  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chMT ADD CONSTRAINT pk_ch_t_SubInd_chMT  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chMulti ADD CONSTRAINT pk_SubInd_chMulti  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chNewSs ADD CONSTRAINT pk_SubInd_chNewSs  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chNotOn ADD CONSTRAINT pk_SubInd_chNotOn  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chPAR ADD CONSTRAINT pk_SubInd_chPAR  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chUn ADD CONSTRAINT pk_SubInd_chUn  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chX ADD CONSTRAINT pk_ch_t_SubInd_chX  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);
+ALTER TABLE SubInd_chY ADD CONSTRAINT pk_ch_t_SubInd_chY  PRIMARY KEY  (chr,batch_id,subsnp_id,submitted_ind_id);

diff --git a/schema/human_9606_schema/human_gty2_index.sql b/schema/human_9606_schema/human_gty2_index.sql
index 480f2ff6070ed3ea244724e49ae6b512fb72362c..3b24325f537737d0cadcd2b5efa5933d50431a76 100644 (file)
--- a/schema/human_9606_schema/human_gty2_index.sql
+++ b/schema/human_9606_schema/human_gty2_index.sql
@@ -1,172 +1,123 @@
- CREATE  INDEX [i_bs] ON [SubInd_ch10]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch10] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch10]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch10] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch11]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch11] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch11]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch11] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch12]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch12] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch12]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch12] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch13]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch13] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch13]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch13] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch14]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch14] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch14]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch14] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch15]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch15] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch15]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch15] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch16]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch16] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch16]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch16] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch17]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch17] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch17]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch17] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch18]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch18] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch18]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch18] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch19]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch19] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch19]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch19] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch20]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch20] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch20]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch20] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch21]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch21] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch21]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch21] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch22]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch22] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch22]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch22] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch8]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch8] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch8]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch8] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_ch9]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_ch9] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_ch9]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_ch9] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chAltOnly]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chAltOnly] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chAltOnly]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chAltOnly] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chMT]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chMT] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chMT]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chMT] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chMulti]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chMulti] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chMulti]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chMulti] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_batch_ss] ON [SubInd_chNewSs]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_batch_ss] ON [SubInd_chNewSs] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chNewSs]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chNewSs] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chNotOn]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chNotOn] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chNotOn]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chNotOn] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chPAR]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chPAR] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chPAR]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chPAR] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chUn]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chUn] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chUn]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chUn] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chX]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chX] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chX]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chX] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_bs] ON [SubInd_chY]([batch_id], [subsnp_id])
+CREATE NONCLUSTERED INDEX [i_bs] ON [SubInd_chY] ([batch_id] ASC,[subsnp_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_ind_ss] ON [SubInd_chY]([submitted_ind_id], [subsnp_id], [gty_id])
+CREATE NONCLUSTERED INDEX [i_ind_ss] ON [SubInd_chY] ([submitted_ind_id] ASC,[subsnp_id] ASC,[gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  CLUSTERED  INDEX [i_b_size] ON [dn_table_rowcount]([build_id] DESC , [reserved_KB_spaceused] DESC )
+CREATE CLUSTERED INDEX [i_b_size] ON [dn_table_rowcount] ([build_id] DESC,[reserved_KB_spaceused] DESC)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/human_gty2_index_postgresql.sql b/schema/human_9606_schema/human_gty2_index_postgresql.sql
index e4f03156b9d920c6478c1cb0d67f47eb75bc227b..bd28e29f3ed6ed9b85219c211958ec765ccf375e 100644 (file)
--- a/schema/human_9606_schema/human_gty2_index_postgresql.sql
+++ b/schema/human_9606_schema/human_gty2_index_postgresql.sql
@@ -1,123 +1,49 @@
- CREATE  INDEX ON SubInd_ch10(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch10(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch11(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch11(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch12(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch12(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch13(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch13(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch14(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch14(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch15(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch15(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch16(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch16(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch17(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch17(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch18(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch18(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch19(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch19(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch20(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch20(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch21(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch21(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch22(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch22(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch8(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch8(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_ch9(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_ch9(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chAltOnly(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chAltOnly(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chMT(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chMT(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chMulti(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chMulti(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chNewSs(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chNewSs(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chNotOn(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chNotOn(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chPAR(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chPAR(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chUn(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chUn(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chX(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chX(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE  INDEX ON SubInd_chY(batch_id, subsnp_id)
-;
- CREATE  INDEX ON SubInd_chY(submitted_ind_id, subsnp_id, gty_id)
-;
-
- CREATE    INDEX ON dn_table_rowcount(build_id DESC , reserved_KB_spaceused DESC )
-;
-
+CREATE INDEX ON SubInd_ch10 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch10 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch11 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch11 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch12 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch12 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch13 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch13 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch14 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch14 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch15 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch15 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch16 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch16 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch17 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch17 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch18 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch18 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch19 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch19 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch20 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch20 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch21 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch21 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch22 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch22 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch8 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch8 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_ch9 (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_ch9 (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chAltOnly (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chAltOnly (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chMT (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chMT (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chMulti (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chMulti (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chNewSs (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chNewSs (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chNotOn (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chNotOn (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chPAR (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chPAR (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chUn (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chUn (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chX (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chX (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON SubInd_chY (batch_id,subsnp_id);
+CREATE INDEX ON SubInd_chY (submitted_ind_id,subsnp_id,gty_id);
+CREATE INDEX ON dn_table_rowcount (build_id DESC,reserved_KB_spaceused DESC);

diff --git a/schema/human_9606_schema/human_gty2_table.sql b/schema/human_9606_schema/human_gty2_table.sql
index a5ff4d06597069b54ff5585a7ca356d5773c6912..d310b6441fde38ea4ca417865e360250ee7ad3bb 100644 (file)
--- a/schema/human_9606_schema/human_gty2_table.sql
+++ b/schema/human_9606_schema/human_gty2_table.sql
@@ -1,326 +1,326 @@
-CREATE TABLE [SubInd_ch10] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch10]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch11] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch11]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch12] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch12]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch13] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch13]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch14] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch14]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch15] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch15]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch16] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch16]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch17] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch17]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch18] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch18]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch19] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch19]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch20] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch20]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch21] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch21]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch22] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch22]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch8] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch8]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_ch9] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_ch9]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chAltOnly] (
-       [chr] [varchar] (8) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chAltOnly]
+(
+[chr] [varchar](8) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chMT] (
-       [chr] [varchar] (8) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chMT]
+(
+[chr] [varchar](8) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chMulti] (
-       [chr] [varchar] (8) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chMulti]
+(
+[chr] [varchar](8) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chNewSs] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [tinyint] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chNewSs]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [tinyint] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chNotOn] (
-       [chr] [varchar] (8) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chNotOn]
+(
+[chr] [varchar](8) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chPAR] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chPAR]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chUn] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chUn]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chX] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chX]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [SubInd_chY] (
-       [chr] [varchar] (3) NOT NULL ,
-       [batch_id] [int] NOT NULL ,
-       [subsnp_id] [int] NOT NULL ,
-       [submitted_ind_id] [int] NOT NULL ,
-       [submitted_strand_code] [int] NULL ,
-       [allele_flag] [int] NULL ,
-       [gty_id] [int] NULL ,
-       [submitted_rs] [int] NULL 
-)
+CREATE TABLE [SubInd_chY]
+(
+[chr] [varchar](3) NOT NULL ,
+[batch_id] [int] NOT NULL ,
+[subsnp_id] [int] NOT NULL ,
+[submitted_ind_id] [int] NOT NULL ,
+[submitted_strand_code] [int] NULL ,
+[allele_flag] [int] NULL ,
+[gty_id] [int] NULL ,
+[submitted_rs] [int] NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [dn_table_rowcount] (
-       [tabname] [varchar] (64) NOT NULL ,
-       [row_cnt] [int] NOT NULL ,
-       [build_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL ,
-       [rows_in_spaceused] [int] NULL ,
-       [reserved_KB_spaceused] [int] NULL ,
-       [data_KB_spaceused] [int] NULL ,
-       [index_size_KB_spaceused] [int] NULL ,
-       [unused_KB_spaceused] [int] NULL 
-)
+CREATE TABLE [dn_table_rowcount]
+(
+[tabname] [varchar](64) NOT NULL ,
+[row_cnt] [int] NOT NULL ,
+[build_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL ,
+[rows_in_spaceused] [int] NULL ,
+[reserved_KB_spaceused] [int] NULL ,
+[data_KB_spaceused] [int] NULL ,
+[index_size_KB_spaceused] [int] NULL ,
+[unused_KB_spaceused] [int] NULL
+)\r

 GO
 
 GO
 

-

diff --git a/schema/human_9606_schema/human_gty2_table_postgresql.sql b/schema/human_9606_schema/human_gty2_table_postgresql.sql
index 616818f6f4e6c6bd79a23250db7931a9e4ab9aed..c4714cde25cf840afbe5d49322f791eb0e4ddacb 100644 (file)
--- a/schema/human_9606_schema/human_gty2_table_postgresql.sql
+++ b/schema/human_9606_schema/human_gty2_table_postgresql.sql
@@ -1,301 +1,276 @@
-CREATE TABLE SubInd_ch10 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch11 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch12 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch13 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch14 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch15 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch16 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch17 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch18 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch19 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch20 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch21 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch22 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch8 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_ch9 (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chAltOnly (
-       chr varchar (8) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chMT (
-       chr varchar (8) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chMulti (
-       chr varchar (8) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chNewSs (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag smallint NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chNotOn (
-       chr varchar (8) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chPAR (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chUn (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chX (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE SubInd_chY (
-       chr varchar (3) NOT NULL ,
-       batch_id int NOT NULL ,
-       subsnp_id int NOT NULL ,
-       submitted_ind_id int NOT NULL ,
-       submitted_strand_code int NULL ,
-       allele_flag int NULL ,
-       gty_id int NULL ,
-       submitted_rs int NULL 
-)
-;
-
-CREATE TABLE dn_table_rowcount (
-       tabname varchar (64) NOT NULL ,
-       row_cnt int NOT NULL ,
-       build_id int NOT NULL ,
-       update_time TIMESTAMP NOT NULL ,
-       rows_in_spaceused int NULL ,
-       reserved_KB_spaceused int NULL ,
-       data_KB_spaceused int NULL ,
-       index_size_KB_spaceused int NULL ,
-       unused_KB_spaceused int NULL 
-)
-;
-
+CREATE TABLE SubInd_ch10
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch11
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch12
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch13
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch14
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch15
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch16
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch17
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch18
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch19
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch20
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch21
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch22
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch8
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_ch9
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chAltOnly
+(
+chr varchar(8) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chMT
+(
+chr varchar(8) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chMulti
+(
+chr varchar(8) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chNewSs
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag smallint NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chNotOn
+(
+chr varchar(8) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chPAR
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chUn
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chX
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE SubInd_chY
+(
+chr varchar(3) NOT NULL ,
+batch_id int NOT NULL ,
+subsnp_id int NOT NULL ,
+submitted_ind_id int NOT NULL ,
+submitted_strand_code int NULL ,
+allele_flag int NULL ,
+gty_id int NULL ,
+submitted_rs int NULL
+);
+CREATE TABLE dn_table_rowcount
+(
+tabname varchar(64) NOT NULL ,
+row_cnt int NOT NULL ,
+build_id int NOT NULL ,
+update_time TIMESTAMP NOT NULL ,
+rows_in_spaceused int NULL ,
+reserved_KB_spaceused int NULL ,
+data_KB_spaceused int NULL ,
+index_size_KB_spaceused int NULL ,
+unused_KB_spaceused int NULL
+);

diff --git a/schema/shared_schema/dbSNP_main_constraint.sql b/schema/shared_schema/dbSNP_main_constraint.sql
index 304d119b3a0b289f3f5a45fa4f8dba9e2e4c0dd5..57326f775b2a1d1a74d96eb4bb188c2f9785ff3c 100644 (file)
--- a/schema/shared_schema/dbSNP_main_constraint.sql
+++ b/schema/shared_schema/dbSNP_main_constraint.sql
@@ -1,398 +1,157 @@
-ALTER TABLE [Allele] ADD 
-       CONSTRAINT [pk_Allele] PRIMARY KEY  CLUSTERED 
-       (
-               [allele_id]
-       )
+ALTER TABLE [Allele] ADD CONSTRAINT [pk_Allele]  PRIMARY KEY  CLUSTERED ([allele_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [AlleleFlagCode] ADD 
-       CONSTRAINT [pk_AlleleFlagCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [AlleleFlagCode] ADD CONSTRAINT [pk_AlleleFlagCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [AlleleMotif] ADD 
-       CONSTRAINT [pk_AlleleMotif] PRIMARY KEY  CLUSTERED 
-       (
-               [allele_id],
-               [motif_order]
-       )
+ALTER TABLE [AlleleMotif] ADD CONSTRAINT [pk_AlleleMotif]  PRIMARY KEY  CLUSTERED ([allele_id] ASC,[motif_order] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [AllocIds] ADD 
-       CONSTRAINT [pk_AllocIds] PRIMARY KEY  NONCLUSTERED 
-       (
-               [name]
-       )
+ALTER TABLE [AllocIds] ADD CONSTRAINT [pk_AllocIds]  PRIMARY KEY  NONCLUSTERED ([name] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Author] ADD 
-       CONSTRAINT [pk_Author] PRIMARY KEY  NONCLUSTERED 
-       (
-               [pub_id],
-               [position]
-       )
+ALTER TABLE [Author] ADD CONSTRAINT [pk_Author]  PRIMARY KEY  NONCLUSTERED ([pub_id] ASC,[position] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
-ALTER TABLE [CpGCode] ADD 
-       CONSTRAINT [pk_CpGCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [CpGCode] ADD CONSTRAINT [pk_CpGCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 
 
 GO
 
 
 

+ALTER TABLE [GenomeBuildInfo] ADD CONSTRAINT [df_GenomeBuildInfo_insert_time] DEFAULT (GETDATE()) FOR [insert_time]
+ALTER TABLE [GenomeBuildInfo] ADD CONSTRAINT [df_GenomeBuildInfo_is_major] DEFAULT ((1)) FOR [is_major]
+ALTER TABLE [GenomeBuildInfo] ADD CONSTRAINT [df_GenomeBuildInfo_ncbi_genome_tax_id] DEFAULT ((0)) FOR [ncbi_genome_tax_id]

 
 

-ALTER TABLE [GenomeBuildInfo] ADD 
-       CONSTRAINT [DF__GenomeBui__inser__15E52B55] DEFAULT (getdate()) FOR [insert_time],
-       CONSTRAINT [DF__GenomeBui__is_ma__18C19800] DEFAULT (1) FOR [is_major],
-       CONSTRAINT [DF__GenomeBui__ncbi___23FE4082] DEFAULT (0) FOR [ncbi_genome_tax_id]
-GO
-
-
-ALTER TABLE [GtyAllele] ADD 
-       CONSTRAINT [pk_GtyAllele] PRIMARY KEY  CLUSTERED 
-       (
-               [gty_id],
-               [rev_flag],
-               [chr_num]
-       )
+ALTER TABLE [GtyAllele] ADD CONSTRAINT [pk_GtyAllele]  PRIMARY KEY  CLUSTERED ([gty_id] ASC,[rev_flag] ASC,[chr_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [IUPACna] ADD 
-       CONSTRAINT [pk_IUPACna] PRIMARY KEY  CLUSTERED 
-       (
-               [allele]
-       )
+ALTER TABLE [IUPACna] ADD CONSTRAINT [pk_IUPACna]  PRIMARY KEY  CLUSTERED ([allele] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [LoadHistory] ADD 
-       CONSTRAINT [pk_LoadHistory] PRIMARY KEY  NONCLUSTERED 
-       (
-               [build_id]
-       )
+ALTER TABLE [LoadHistory] ADD CONSTRAINT [pk_LoadHistory]  PRIMARY KEY  NONCLUSTERED ([build_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [LocTypeCode] ADD 
-       CONSTRAINT [DF__LocTypeCo__creat__75CD617E] DEFAULT (getdate()) FOR [create_time],
-       CONSTRAINT [pk_LocTypeCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [LocTypeCode] ADD CONSTRAINT [DF__LocTypeCo__creat__75CD617E] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [LocTypeCode] ADD CONSTRAINT [pk_LocTypeCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [MapLinkCode] ADD 
-       CONSTRAINT [pk_MapLinkCode] PRIMARY KEY  CLUSTERED 
-       (
-               [which_code],
-               [code]
-       )
+ALTER TABLE [MapLinkCode] ADD CONSTRAINT [pk_MapLinkCode]  PRIMARY KEY  CLUSTERED ([which_code] ASC,[code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Method] ADD 
-       CONSTRAINT [pk_Method_mid] PRIMARY KEY  CLUSTERED 
-       (
-               [method_id]
-       )
+ALTER TABLE [Method] ADD CONSTRAINT [pk_Method_mid]  PRIMARY KEY  CLUSTERED ([method_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [MethodClass] ADD 
-       CONSTRAINT [pk_MethodClass] PRIMARY KEY  CLUSTERED 
-       (
-               [meth_class_id]
-       )
+ALTER TABLE [MethodClass] ADD CONSTRAINT [pk_MethodClass]  PRIMARY KEY  CLUSTERED ([meth_class_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [MethodLine] ADD 
-       CONSTRAINT [pk_MethodLine] PRIMARY KEY  NONCLUSTERED 
-       (
-               [method_id],
-               [line_num]
-       )
+ALTER TABLE [MethodLine] ADD CONSTRAINT [pk_MethodLine]  PRIMARY KEY  NONCLUSTERED ([method_id] ASC,[line_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Moltype] ADD 
-       CONSTRAINT [pk_Moltype] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [Moltype] ADD CONSTRAINT [pk_Moltype]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Motif] ADD 
-       CONSTRAINT [pk_Motif] PRIMARY KEY  CLUSTERED 
-       (
-               [motif_id]
-       )
+ALTER TABLE [Motif] ADD CONSTRAINT [pk_Motif]  PRIMARY KEY  CLUSTERED ([motif_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [ObsGenotype] ADD 
-       CONSTRAINT [pk_ObsGenotype] PRIMARY KEY  CLUSTERED 
-       (
-               [gty_id]
-       )
+ALTER TABLE [ObsGenotype] ADD CONSTRAINT [pk_ObsGenotype]  PRIMARY KEY  CLUSTERED ([gty_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [ObsVariation] ADD 
-       CONSTRAINT [DF__ObsVariat__creat__3BB5CE82] DEFAULT (getdate()) FOR [create_time],
-       CONSTRAINT [DF__ObsVariat__last___3CA9F2BB] DEFAULT (getdate()) FOR [last_updated_time],
-       CONSTRAINT [pk_ObsVariation] PRIMARY KEY  CLUSTERED 
-       (
-               [var_id]
-       )
+ALTER TABLE [ObsVariation] ADD CONSTRAINT [DF__ObsVariat__creat__3BB5CE82] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [ObsVariation] ADD CONSTRAINT [DF__ObsVariat__last___3CA9F2BB] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [ObsVariation] ADD CONSTRAINT [pk_ObsVariation]  PRIMARY KEY  CLUSTERED ([var_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [OrgDbStatus] ADD 
-       CONSTRAINT [pk_org_db_status] PRIMARY KEY  CLUSTERED 
-       (
-               [database_name]
-       )
+ALTER TABLE [OrgDbStatus] ADD CONSTRAINT [pk_org_db_status]  PRIMARY KEY  CLUSTERED ([database_name] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [OrganismTax] ADD 
-       CONSTRAINT [pk_organism] PRIMARY KEY  NONCLUSTERED 
-       (
-               [tax_id]
-       )
+ALTER TABLE [OrganismTax] ADD CONSTRAINT [pk_organism]  PRIMARY KEY  NONCLUSTERED ([tax_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [PopClass] ADD 
-       CONSTRAINT [pk_PopClass] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_id],
-               [pop_class_id]
-       )
+ALTER TABLE [PopClass] ADD CONSTRAINT [pk_PopClass]  PRIMARY KEY  CLUSTERED ([pop_id] ASC,[pop_class_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [PopClassCode] ADD 
-       CONSTRAINT [PK__PopClassCode__270595B6] PRIMARY KEY  CLUSTERED 
-       (
-               [pop_class_id]
-       )
+ALTER TABLE [PopClassCode] ADD CONSTRAINT [PK__PopClassCode__270595B6]  PRIMARY KEY  CLUSTERED ([pop_class_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [Publication] ADD 
-       CONSTRAINT [pk_Publication] PRIMARY KEY  NONCLUSTERED 
-       (
-               [pub_id]
-       )
+ALTER TABLE [Publication] ADD CONSTRAINT [pk_Publication]  PRIMARY KEY  NONCLUSTERED ([pub_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNPGlossary] ADD 
-       CONSTRAINT [DF__SNPGlossa__last___4050666D] DEFAULT (getdate()) FOR [last_updated],
-       CONSTRAINT [pk_SNPGlossary] PRIMARY KEY  CLUSTERED 
-       (
-               [term]
-       )
+ALTER TABLE [SNPGlossary] ADD CONSTRAINT [DF__SNPGlossa__last___4050666D] DEFAULT (GETDATE()) FOR [last_updated]
+ALTER TABLE [SNPGlossary] ADD CONSTRAINT [pk_SNPGlossary]  PRIMARY KEY  CLUSTERED ([term] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SNP_tax_id] ADD 
-       CONSTRAINT [DF__SNP_tax_i__statu__31583BA0] DEFAULT ('C') FOR [status],
-       CONSTRAINT [pk_SNP_tax_id] PRIMARY KEY  CLUSTERED 
-       (
-               [snp_id]
-       )
+ALTER TABLE [SNP_tax_id] ADD CONSTRAINT [DF__SNP_tax_i__statu__31583BA0] DEFAULT ('C') FOR [status]
+ALTER TABLE [SNP_tax_id] ADD CONSTRAINT [pk_SNP_tax_id]  PRIMARY KEY  CLUSTERED ([snp_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SnpChrCode] ADD 
-       CONSTRAINT [pk_SnpChrCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [SnpChrCode] ADD CONSTRAINT [pk_SnpChrCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SnpClassCode] ADD 
-       CONSTRAINT [pk_SnpClassCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [SnpClassCode] ADD CONSTRAINT [pk_SnpClassCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SnpFunctionCode] ADD 
-       CONSTRAINT [pk_SnpFunctionCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [SnpFunctionCode] ADD CONSTRAINT [pk_SnpFunctionCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [SnpValidationCode] ADD 
-       CONSTRAINT [pk_SnpValidationCode] PRIMARY KEY  NONCLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [SnpValidationCode] ADD CONSTRAINT [pk_SnpValidationCode]  PRIMARY KEY  NONCLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [StrandCode] ADD 
-       CONSTRAINT [pk_StrandCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [StrandCode] ADD CONSTRAINT [pk_StrandCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
-ALTER TABLE [Submitter] ADD 
-       CONSTRAINT [DF_Submitter_create_time] DEFAULT (getdate()) FOR [create_time],
-       CONSTRAINT [pk_Submitter] PRIMARY KEY  NONCLUSTERED 
-       (
-               [handle]
-       )
+ALTER TABLE [Submitter] ADD CONSTRAINT [DF_Submitter_create_time] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [Submitter] ADD CONSTRAINT [pk_Submitter]  PRIMARY KEY  NONCLUSTERED ([handle] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [TemplateType] ADD 
-       CONSTRAINT [pk_TemplateType] PRIMARY KEY  CLUSTERED 
-       (
-               [temp_type_id]
-       )
+ALTER TABLE [TemplateType] ADD CONSTRAINT [pk_TemplateType]  PRIMARY KEY  CLUSTERED ([temp_type_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [UniGty] ADD 
-       CONSTRAINT [pk_UniGty] PRIMARY KEY  CLUSTERED 
-       (
-               [unigty_id]
-       )
+ALTER TABLE [UniGty] ADD CONSTRAINT [pk_UniGty]  PRIMARY KEY  CLUSTERED ([unigty_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [UniVariAllele] ADD 
-       CONSTRAINT [pk_UniVariAllele] PRIMARY KEY  CLUSTERED 
-       (
-               [univar_id],
-               [allele_id]
-       )
+ALTER TABLE [UniVariAllele] ADD CONSTRAINT [pk_UniVariAllele]  PRIMARY KEY  CLUSTERED ([univar_id] ASC,[allele_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [UniVariation] ADD 
-       CONSTRAINT [pk_UniVariation] PRIMARY KEY  CLUSTERED 
-       (
-               [univar_id]
-       )
+ALTER TABLE [UniVariation] ADD CONSTRAINT [pk_UniVariation]  PRIMARY KEY  CLUSTERED ([univar_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [UniVariationSrcCode] ADD 
-       CONSTRAINT [pk_UniVariationSrcCode] PRIMARY KEY  CLUSTERED 
-       (
-               [code]
-       )
+ALTER TABLE [UniVariationSrcCode] ADD CONSTRAINT [pk_UniVariationSrcCode]  PRIMARY KEY  CLUSTERED ([code] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [VariAllele] ADD 
-       CONSTRAINT [pk_VariAllele] PRIMARY KEY  CLUSTERED 
-       (
-               [var_id],
-               [allele_id]
-       )
+ALTER TABLE [VariAllele] ADD CONSTRAINT [pk_VariAllele]  PRIMARY KEY  CLUSTERED ([var_id] ASC,[allele_id] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [db_DataDictionaryNew] ADD 
-       CONSTRAINT [DF__db_DataDi__updat__5BB889C0] DEFAULT (getdate()) FOR [update_time]
+ALTER TABLE [db_ftp_table_list] ADD CONSTRAINT [DF__db_ftp_ta__creat__27F9B9EF] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [db_ftp_table_list] ADD CONSTRAINT [pk_db_ftp_table_list]  PRIMARY KEY  CLUSTERED ([table_name] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [db_ftp_table_list] ADD 
-       CONSTRAINT [DF__db_ftp_ta__creat__27F9B9EF] DEFAULT (getdate()) FOR [create_time],
-       CONSTRAINT [pk_db_ftp_table_list] PRIMARY KEY  CLUSTERED 
-       (
-               [table_name]
-       )
+ALTER TABLE [db_map_table_name] ADD CONSTRAINT [DF__db_map_ta__inNon__206E7217] DEFAULT ('N') FOR [inNonHuman]
+ALTER TABLE [db_map_table_name] ADD CONSTRAINT [pk_db_map_table_name]  PRIMARY KEY  CLUSTERED ([table_name] ASC)\r

 GO
 
 GO
 

-
-
-ALTER TABLE [dn_Allele_rev] ADD 
-       CONSTRAINT [pk_dn_Allele_rev] PRIMARY KEY  CLUSTERED 
-       (
-               [allele_id],
-               [rev_flag]
-       )
+ALTER TABLE [dn_Allele_rev] ADD CONSTRAINT [pk_dn_Allele_rev]  PRIMARY KEY  CLUSTERED ([allele_id] ASC,[rev_flag] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_Motif_rev] ADD 
-       CONSTRAINT [pk_dn_Motif_rev] PRIMARY KEY  CLUSTERED 
-       (
-               [motif_id],
-               [rev_flag]
-       )
+ALTER TABLE [dn_Motif_rev] ADD CONSTRAINT [pk_dn_Motif_rev]  PRIMARY KEY  CLUSTERED ([motif_id] ASC,[rev_flag] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_UniGty_allele] ADD 
-       CONSTRAINT [pk_dn_UniGty_allele] PRIMARY KEY  CLUSTERED 
-       (
-               [unigty_id],
-               [chr_num]
-       )
+ALTER TABLE [dn_UniGty_allele] ADD CONSTRAINT [pk_dn_UniGty_allele]  PRIMARY KEY  CLUSTERED ([unigty_id] ASC,[chr_num] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_UniGty_rev] ADD 
-       CONSTRAINT [pk_dn_Gty_rev] PRIMARY KEY  CLUSTERED 
-       (
-               [unigty_id],
-               [rev_flag]
-       )
+ALTER TABLE [dn_UniGty_rev] ADD CONSTRAINT [pk_dn_Gty_rev]  PRIMARY KEY  CLUSTERED ([unigty_id] ASC,[rev_flag] ASC)\r

 GO
 
 GO
 

-
-ALTER TABLE [dn_UniVariation_rev] ADD 
-       CONSTRAINT [pk_dn_UniVariation_rev] PRIMARY KEY  CLUSTERED 
-       (
-               [univar_id],
-               [rev_flag]
-       )
+ALTER TABLE [dn_UniVariation_rev] ADD CONSTRAINT [pk_dn_UniVariation_rev]  PRIMARY KEY  CLUSTERED ([univar_id] ASC,[rev_flag] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
-ALTER TABLE [dn_summary] ADD 
-       CONSTRAINT [DF__dn_summar__creat__383A4359] DEFAULT (getdate()) FOR [create_time],
-       CONSTRAINT [DF__dn_summar__last___392E6792] DEFAULT (getdate()) FOR [last_updated_time],
-        PRIMARY KEY  CLUSTERED 
-       (
-               [tax_id],
-               [build_id],
-               [type]
-       )
+ALTER TABLE [dn_summary] ADD CONSTRAINT [DF__dn_summar__creat__383A4359] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [dn_summary] ADD CONSTRAINT [DF__dn_summar__last___392E6792] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [dn_summary] ADD CONSTRAINT [PK__dn_summary__3651FAE7]  PRIMARY KEY  CLUSTERED ([tax_id] ASC,[build_id] ASC,[type] ASC)\r

 GO
 
 GO
 

-

diff --git a/schema/shared_schema/dbSNP_main_constraint_postgresql.sql b/schema/shared_schema/dbSNP_main_constraint_postgresql.sql
index 802b551b14f2cdbfb9fecd98beb7762e226a387f..66edbcf0386c913ca3d3afe6ab0814610cba7ddc 100644 (file)
--- a/schema/shared_schema/dbSNP_main_constraint_postgresql.sql
+++ b/schema/shared_schema/dbSNP_main_constraint_postgresql.sql
@@ -1,351 +1,67 @@
-ALTER TABLE Allele ADD \r
-       CONSTRAINT pk_Allele PRIMARY KEY   \r
-       (\r
-               allele_id\r
-       )\r
-;\r
-\r
-ALTER TABLE AlleleFlagCode ADD \r
-       CONSTRAINT pk_AlleleFlagCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE AlleleMotif ADD \r
-       CONSTRAINT pk_AlleleMotif PRIMARY KEY   \r
-       (\r
-               allele_id,\r
-               motif_order\r
-       )\r
-;\r
-\r
-ALTER TABLE AllocIds ADD \r
-       CONSTRAINT pk_AllocIds PRIMARY KEY\r
-       (\r
-               name\r
-       )\r
-;\r
-\r
-ALTER TABLE Author ADD \r
-       CONSTRAINT pk_Author PRIMARY KEY\r
-       (\r
-               pub_id,\r
-               position\r
-       )\r
-;\r
-\r
-\r
-\r
-ALTER TABLE CpGCode ADD \r
-       CONSTRAINT pk_CpGCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-\r
-\r
--- ALTER TABLE GenomeBuildInfo ADD \r
---     CONSTRAINT DF__GenomeBui__inser__15E52B55 DEFAULT (getdate()) FOR insert_time,\r
---     CONSTRAINT DF__GenomeBui__is_ma__18C19800 DEFAULT (1) FOR is_major,\r
---     CONSTRAINT DF__GenomeBui__ncbi___23FE4082 DEFAULT (0) FOR ncbi_genome_tax_id\r
--- ;\r
-\r
-ALTER TABLE GtyAllele ADD \r
-       CONSTRAINT pk_GtyAllele PRIMARY KEY   \r
-       (\r
-               gty_id,\r
-               rev_flag,\r
-               chr_num\r
-       )\r
-;\r
-\r
-ALTER TABLE IUPACna ADD \r
-       CONSTRAINT pk_IUPACna PRIMARY KEY   \r
-       (\r
-               allele\r
-       )\r
-;\r
-\r
-ALTER TABLE LoadHistory ADD \r
-       CONSTRAINT pk_LoadHistory PRIMARY KEY\r
-       (\r
-               build_id\r
-       )\r
-;\r
-\r
-ALTER TABLE LocTypeCode ADD \r
---     CONSTRAINT DF__LocTypeCo__creat__75CD617E DEFAULT (getdate()) FOR create_time,\r
-       CONSTRAINT pk_LocTypeCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE MapLinkCode ADD \r
-       CONSTRAINT pk_MapLinkCode PRIMARY KEY   \r
-       (\r
-               which_code,\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE Method ADD \r
-       CONSTRAINT pk_Method_mid PRIMARY KEY   \r
-       (\r
-               method_id\r
-       )\r
-;\r
-\r
-ALTER TABLE MethodClass ADD \r
-       CONSTRAINT pk_MethodClass PRIMARY KEY   \r
-       (\r
-               meth_class_id\r
-       )\r
-;\r
-\r
-ALTER TABLE MethodLine ADD \r
-       CONSTRAINT pk_MethodLine PRIMARY KEY\r
-       (\r
-               method_id,\r
-               line_num\r
-       )\r
-;\r
-\r
-ALTER TABLE Moltype ADD \r
-       CONSTRAINT pk_Moltype PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE Motif ADD \r
-       CONSTRAINT pk_Motif PRIMARY KEY   \r
-       (\r
-               motif_id\r
-       )\r
-;\r
-\r
-ALTER TABLE ObsGenotype ADD \r
-       CONSTRAINT pk_ObsGenotype PRIMARY KEY   \r
-       (\r
-               gty_id\r
-       )\r
-;\r
-\r
-ALTER TABLE ObsVariation ADD \r
---     CONSTRAINT DF__ObsVariat__creat__3BB5CE82 DEFAULT (getdate()) FOR create_time,\r
---     CONSTRAINT DF__ObsVariat__last___3CA9F2BB DEFAULT (getdate()) FOR last_updated_time,\r
-       CONSTRAINT pk_ObsVariation PRIMARY KEY   \r
-       (\r
-               var_id\r
-       )\r
-;\r
-\r
-ALTER TABLE OrgDbStatus ADD \r
-       CONSTRAINT pk_org_db_status PRIMARY KEY   \r
-       (\r
-               database_name\r
-       )\r
-;\r
-\r
-ALTER TABLE OrganismTax ADD \r
-       CONSTRAINT pk_organism PRIMARY KEY\r
-       (\r
-               tax_id\r
-       )\r
-;\r
-\r
-ALTER TABLE PopClass ADD \r
-       CONSTRAINT pk_PopClass PRIMARY KEY   \r
-       (\r
-               pop_id,\r
-               pop_class_id\r
-       )\r
-;\r
-\r
-ALTER TABLE PopClassCode ADD \r
-       CONSTRAINT PK__PopClassCode__270595B6 PRIMARY KEY   \r
-       (\r
-               pop_class_id\r
-       )\r
-;\r
-\r
-ALTER TABLE Publication ADD \r
-       CONSTRAINT pk_Publication PRIMARY KEY\r
-       (\r
-               pub_id\r
-       )\r
-;\r
-\r
-ALTER TABLE SNPGlossary ADD \r
---     CONSTRAINT DF__SNPGlossa__last___4050666D DEFAULT (getdate()) FOR last_updated,\r
-       CONSTRAINT pk_SNPGlossary PRIMARY KEY   \r
-       (\r
-               term\r
-       )\r
-;\r
-\r
-ALTER TABLE SNP_tax_id ADD \r
---     CONSTRAINT DF__SNP_tax_i__statu__31583BA0 DEFAULT ('C') FOR status,\r
-       CONSTRAINT pk_SNP_tax_id PRIMARY KEY   \r
-       (\r
-               snp_id\r
-       )\r
-;\r
-\r
-ALTER TABLE SnpChrCode ADD \r
-       CONSTRAINT pk_SnpChrCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE SnpClassCode ADD \r
-       CONSTRAINT pk_SnpClassCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE SnpFunctionCode ADD \r
-       CONSTRAINT pk_SnpFunctionCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE SnpValidationCode ADD \r
-       CONSTRAINT pk_SnpValidationCode PRIMARY KEY\r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE StrandCode ADD \r
-       CONSTRAINT pk_StrandCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-\r
-\r
-ALTER TABLE Submitter ADD \r
---     CONSTRAINT DF_Submitter_create_time DEFAULT (getdate()) FOR create_time,\r
-       CONSTRAINT pk_Submitter PRIMARY KEY\r
-       (\r
-               handle\r
-       )\r
-;\r
-\r
-ALTER TABLE TemplateType ADD \r
-       CONSTRAINT pk_TemplateType PRIMARY KEY   \r
-       (\r
-               temp_type_id\r
-       )\r
-;\r
-\r
-ALTER TABLE UniGty ADD \r
-       CONSTRAINT pk_UniGty PRIMARY KEY   \r
-       (\r
-               unigty_id\r
-       )\r
-;\r
-\r
-ALTER TABLE UniVariAllele ADD \r
-       CONSTRAINT pk_UniVariAllele PRIMARY KEY   \r
-       (\r
-               univar_id,\r
-               allele_id\r
-       )\r
-;\r
-\r
-ALTER TABLE UniVariation ADD \r
-       CONSTRAINT pk_UniVariation PRIMARY KEY   \r
-       (\r
-               univar_id\r
-       )\r
-;\r
-\r
-ALTER TABLE UniVariationSrcCode ADD \r
-       CONSTRAINT pk_UniVariationSrcCode PRIMARY KEY   \r
-       (\r
-               code\r
-       )\r
-;\r
-\r
-ALTER TABLE VariAllele ADD \r
-       CONSTRAINT pk_VariAllele PRIMARY KEY   \r
-       (\r
-               var_id,\r
-               allele_id\r
-       )\r
-;\r
-\r
-ALTER TABLE db_ftp_table_list ADD \r
---     CONSTRAINT DF__db_ftp_ta__creat__27F9B9EF DEFAULT (getdate()) FOR create_time,\r
-       CONSTRAINT pk_db_ftp_table_list PRIMARY KEY   \r
-       (\r
-               table_name\r
-       )\r
-;\r
-\r
--- ALTER TABLE db_map_table_name ADD \r
---     CONSTRAINT DF__db_map_ta__inNon__206E7217 DEFAULT ('N') FOR inNonHuman\r
--- ;\r
-\r
-ALTER TABLE dn_Allele_rev ADD \r
-       CONSTRAINT pk_dn_Allele_rev PRIMARY KEY   \r
-       (\r
-               allele_id,\r
-               rev_flag\r
-       )\r
-;\r
-\r
-ALTER TABLE dn_Motif_rev ADD \r
-       CONSTRAINT pk_dn_Motif_rev PRIMARY KEY   \r
-       (\r
-               motif_id,\r
-               rev_flag\r
-       )\r
-;\r
-\r
-ALTER TABLE dn_UniGty_allele ADD \r
-       CONSTRAINT pk_dn_UniGty_allele PRIMARY KEY   \r
-       (\r
-               unigty_id,\r
-               chr_num\r
-       )\r
-;\r
-\r
-ALTER TABLE dn_UniGty_rev ADD \r
-       CONSTRAINT pk_dn_Gty_rev PRIMARY KEY   \r
-       (\r
-               unigty_id,\r
-               rev_flag\r
-       )\r
-;\r
-\r
-ALTER TABLE dn_UniVariation_rev ADD \r
-       CONSTRAINT pk_dn_UniVariation_rev PRIMARY KEY   \r
-       (\r
-               univar_id,\r
-               rev_flag\r
-       )\r
-;\r
-\r
-\r
-\r
-ALTER TABLE dn_summary ADD \r
---     CONSTRAINT DF__dn_summar__creat__383A4359 DEFAULT (getdate()) FOR create_time,\r
---     CONSTRAINT DF__dn_summar__last___392E6792 DEFAULT (getdate()) FOR last_updated_time,\r
-        PRIMARY KEY   \r
-       (\r
-               tax_id,\r
-               build_id,\r
-               type\r
-       )\r
-;\r
-\r
+ALTER TABLE Allele ADD CONSTRAINT pk_Allele  PRIMARY KEY   (allele_id ASC);
+ALTER TABLE AlleleFlagCode ADD CONSTRAINT pk_AlleleFlagCode  PRIMARY KEY   (code ASC);
+ALTER TABLE AlleleMotif ADD CONSTRAINT pk_AlleleMotif  PRIMARY KEY   (allele_id ASC,motif_order ASC);
+ALTER TABLE AllocIds ADD CONSTRAINT pk_AllocIds  PRIMARY KEY   (name ASC);
+ALTER TABLE Author ADD CONSTRAINT pk_Author  PRIMARY KEY   (pub_id ASC,position ASC);
+
+
+ALTER TABLE CpGCode ADD CONSTRAINT pk_CpGCode  PRIMARY KEY   (code ASC);
+
+
+ALTER TABLE GenomeBuildInfo ALTER COLUMN insert_time SET DEFAULT NOW();
+ALTER TABLE GenomeBuildInfo ALTER COLUMN is_major SET DEFAULT (1);
+ALTER TABLE GenomeBuildInfo ALTER COLUMN ncbi_genome_tax_id SET DEFAULT (0);
+
+ALTER TABLE GtyAllele ADD CONSTRAINT pk_GtyAllele  PRIMARY KEY   (gty_id ASC,rev_flag ASC,chr_num ASC);
+ALTER TABLE IUPACna ADD CONSTRAINT pk_IUPACna  PRIMARY KEY   (allele ASC);
+ALTER TABLE LoadHistory ADD CONSTRAINT pk_LoadHistory  PRIMARY KEY   (build_id ASC);
+ALTER TABLE LocTypeCode ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE LocTypeCode ADD CONSTRAINT pk_LocTypeCode  PRIMARY KEY   (code ASC);
+ALTER TABLE MapLinkCode ADD CONSTRAINT pk_MapLinkCode  PRIMARY KEY   (which_code ASC,code ASC);
+ALTER TABLE Method ADD CONSTRAINT pk_Method_mid  PRIMARY KEY   (method_id ASC);
+ALTER TABLE MethodClass ADD CONSTRAINT pk_MethodClass  PRIMARY KEY   (meth_class_id ASC);
+ALTER TABLE MethodLine ADD CONSTRAINT pk_MethodLine  PRIMARY KEY   (method_id ASC,line_num ASC);
+ALTER TABLE Moltype ADD CONSTRAINT pk_Moltype  PRIMARY KEY   (code ASC);
+ALTER TABLE Motif ADD CONSTRAINT pk_Motif  PRIMARY KEY   (motif_id ASC);
+ALTER TABLE ObsGenotype ADD CONSTRAINT pk_ObsGenotype  PRIMARY KEY   (gty_id ASC);
+ALTER TABLE ObsVariation ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE ObsVariation ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE ObsVariation ADD CONSTRAINT pk_ObsVariation  PRIMARY KEY   (var_id ASC);
+ALTER TABLE OrgDbStatus ADD CONSTRAINT pk_org_db_status  PRIMARY KEY   (database_name ASC);
+ALTER TABLE OrganismTax ADD CONSTRAINT pk_organism  PRIMARY KEY   (tax_id ASC);
+ALTER TABLE PopClass ADD CONSTRAINT pk_PopClass  PRIMARY KEY   (pop_id ASC,pop_class_id ASC);
+ALTER TABLE PopClassCode ADD CONSTRAINT PK__PopClassCode__270595B6  PRIMARY KEY   (pop_class_id ASC);
+ALTER TABLE Publication ADD CONSTRAINT pk_Publication  PRIMARY KEY   (pub_id ASC);
+ALTER TABLE SNPGlossary ALTER COLUMN last_updated SET DEFAULT NOW();
+ALTER TABLE SNPGlossary ADD CONSTRAINT pk_SNPGlossary  PRIMARY KEY   (term ASC);
+ALTER TABLE SNP_tax_id ALTER COLUMN status SET DEFAULT 'C';
+ALTER TABLE SNP_tax_id ADD CONSTRAINT pk_SNP_tax_id  PRIMARY KEY   (snp_id ASC);
+ALTER TABLE SnpChrCode ADD CONSTRAINT pk_SnpChrCode  PRIMARY KEY   (code ASC);
+ALTER TABLE SnpClassCode ADD CONSTRAINT pk_SnpClassCode  PRIMARY KEY   (code ASC);
+ALTER TABLE SnpFunctionCode ADD CONSTRAINT pk_SnpFunctionCode  PRIMARY KEY   (code ASC);
+ALTER TABLE SnpValidationCode ADD CONSTRAINT pk_SnpValidationCode  PRIMARY KEY   (code ASC);
+ALTER TABLE StrandCode ADD CONSTRAINT pk_StrandCode  PRIMARY KEY   (code ASC);
+
+
+ALTER TABLE Submitter ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE Submitter ADD CONSTRAINT pk_Submitter  PRIMARY KEY   (handle ASC);
+ALTER TABLE TemplateType ADD CONSTRAINT pk_TemplateType  PRIMARY KEY   (temp_type_id ASC);
+ALTER TABLE UniGty ADD CONSTRAINT pk_UniGty  PRIMARY KEY   (unigty_id ASC);
+ALTER TABLE UniVariAllele ADD CONSTRAINT pk_UniVariAllele  PRIMARY KEY   (univar_id ASC,allele_id ASC);
+ALTER TABLE UniVariation ADD CONSTRAINT pk_UniVariation  PRIMARY KEY   (univar_id ASC);
+ALTER TABLE UniVariationSrcCode ADD CONSTRAINT pk_UniVariationSrcCode  PRIMARY KEY   (code ASC);
+ALTER TABLE VariAllele ADD CONSTRAINT pk_VariAllele  PRIMARY KEY   (var_id ASC,allele_id ASC);
+ALTER TABLE db_ftp_table_list ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE db_ftp_table_list ADD CONSTRAINT pk_db_ftp_table_list  PRIMARY KEY   (table_name ASC);
+ALTER TABLE db_map_table_name ALTER COLUMN inNonHuman SET DEFAULT 'N';
+ALTER TABLE db_map_table_name ADD CONSTRAINT pk_db_map_table_name  PRIMARY KEY   (table_name ASC);
+ALTER TABLE dn_Allele_rev ADD CONSTRAINT pk_dn_Allele_rev  PRIMARY KEY   (allele_id ASC,rev_flag ASC);
+ALTER TABLE dn_Motif_rev ADD CONSTRAINT pk_dn_Motif_rev  PRIMARY KEY   (motif_id ASC,rev_flag ASC);
+ALTER TABLE dn_UniGty_allele ADD CONSTRAINT pk_dn_UniGty_allele  PRIMARY KEY   (unigty_id ASC,chr_num ASC);
+ALTER TABLE dn_UniGty_rev ADD CONSTRAINT pk_dn_Gty_rev  PRIMARY KEY   (unigty_id ASC,rev_flag ASC);
+ALTER TABLE dn_UniVariation_rev ADD CONSTRAINT pk_dn_UniVariation_rev  PRIMARY KEY   (univar_id ASC,rev_flag ASC);
+
+
+ALTER TABLE dn_summary ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE dn_summary ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE dn_summary ADD CONSTRAINT PK__dn_summary__3651FAE7  PRIMARY KEY   (tax_id ASC,build_id ASC,type ASC);

diff --git a/schema/shared_schema/dbSNP_main_index.sql b/schema/shared_schema/dbSNP_main_index.sql
index 7586c54eaa51a8919fc0a2d5fd8b6a708e1f951b..5040d46d192684cb410027a057575c5877de6a43 100644 (file)
--- a/schema/shared_schema/dbSNP_main_index.sql
+++ b/schema/shared_schema/dbSNP_main_index.sql
@@ -1,24 +1,19 @@
- CREATE  UNIQUE  INDEX [i_allele] ON [Allele]([allele])
+CREATE NONCLUSTERED INDEX [i_allele] ON [Allele] ([allele] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_rev_allele_id] ON [Allele]([rev_allele_id])
+CREATE NONCLUSTERED INDEX [i_rev_allele_id] ON [Allele] ([rev_allele_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_motif] ON [AlleleMotif]([motif_id])
+CREATE NONCLUSTERED INDEX [i_motif] ON [AlleleMotif] ([motif_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [ind_AllocIds_name] ON [AllocIds]([name])
+CREATE CLUSTERED INDEX [ind_AllocIds_name] ON [AllocIds] ([name] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_auth] ON [Author]([author])
+CREATE NONCLUSTERED INDEX [i_auth] ON [Author] ([author] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_ss] ON [Batch_tax_id]([batch_id])
+CREATE CLUSTERED INDEX [i_ss] ON [Batch_tax_id] ([batch_id] ASC)\r

 GO
 
 
 GO
 
 


@@ -26,129 +21,98 @@ GO
 
 
 
 
 
 

-
- CREATE  INDEX [i_unigty] ON [GtyAllele]([unigty_id])
+CREATE NONCLUSTERED INDEX [i_unigty] ON [GtyAllele] ([unigty_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [gty_id_idx] ON [GtyAllele]([gty_id])
+CREATE NONCLUSTERED INDEX [gty_id_idx] ON [GtyAllele] ([gty_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_gty_id] ON [GtyAllele]([gty_id])
+CREATE NONCLUSTERED INDEX [i_gty_id] ON [GtyAllele] ([gty_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_loaddate] ON [LoadHistory]([loaddate])
+CREATE NONCLUSTERED INDEX [i_loaddate] ON [LoadHistory] ([loaddate] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
- CREATE  UNIQUE  INDEX [i_handle_loc_method_id] ON [Method]([handle], [loc_method_id])
+CREATE NONCLUSTERED INDEX [i_handle_loc_method_id] ON [Method] ([handle] ASC,[loc_method_id] ASC)\r

 GO
 
 
 
 
 GO
 
 
 
 

-
- CREATE  UNIQUE  INDEX [i_motif] ON [Motif]([motif])
+CREATE NONCLUSTERED INDEX [i_motif] ON [Motif] ([motif] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_obs] ON [ObsGenotype]([obs])
+CREATE NONCLUSTERED INDEX [i_obs] ON [ObsGenotype] ([obs] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_obs_upp_fix] ON [ObsGenotype]([obs_upp_fix])
+CREATE NONCLUSTERED INDEX [i_obs_upp_fix] ON [ObsGenotype] ([obs_upp_fix] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_gty_id] ON [ObsGenotype]([gty_id])
+CREATE NONCLUSTERED INDEX [i_gty_id] ON [ObsGenotype] ([gty_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  INDEX [i_pattern] ON [ObsVariation]([pattern])
+CREATE NONCLUSTERED INDEX [i_pattern] ON [ObsVariation] ([pattern] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_univar] ON [ObsVariation]([univar_id])
+CREATE NONCLUSTERED INDEX [i_univar] ON [ObsVariation] ([univar_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [iuc_OrganismTax] ON [OrganismTax]([organism])
+CREATE CLUSTERED INDEX [iuc_OrganismTax] ON [OrganismTax] ([organism] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_tax_id] ON [OrganismTax]([tax_id])
+CREATE NONCLUSTERED INDEX [i_tax_id] ON [OrganismTax] ([tax_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_sp_tax] ON [OrganismTax]([species_tax_id])
+CREATE NONCLUSTERED INDEX [i_sp_tax] ON [OrganismTax] ([species_tax_id] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_dbname] ON [OrganismTax]([database_name])
+CREATE NONCLUSTERED INDEX [i_dbname] ON [OrganismTax] ([database_name] ASC)\r

 GO
 
 
 
 GO
 
 
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_handle_title] ON [Publication]([handle], [title])
+CREATE CLUSTERED INDEX [i_handle_title] ON [Publication] ([handle] ASC,[title] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_tax_id] ON [SNP_tax_id]([tax_id], [snp_id])
+CREATE NONCLUSTERED INDEX [i_tax_id] ON [SNP_tax_id] ([tax_id] ASC,[snp_id] ASC)\r

 GO
 
 
 
 
 GO
 
 
 
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_code] ON [SnpValidationCode]([code])
+CREATE CLUSTERED INDEX [i_code] ON [SnpValidationCode] ([code] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_abbrev_orien] ON [StrandCode]([abbrev], [rs_to_ss_orien], [code])
+CREATE NONCLUSTERED INDEX [i_abbrev_orien] ON [StrandCode] ([abbrev] ASC,[rs_to_ss_orien] ASC,[code] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_comment_id] ON [SubSNPDelComm]([comment_id])
+CREATE CLUSTERED INDEX [i_comment_id] ON [SubSNPDelComm] ([comment_id] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  UNIQUE  CLUSTERED  INDEX [iuc_Submitter] ON [Submitter]([handle])
+CREATE CLUSTERED INDEX [iuc_Submitter] ON [Submitter] ([handle] ASC)\r

 GO
 GO

-
- CREATE  INDEX [ic_Submitter] ON [Submitter]([name])
+CREATE NONCLUSTERED INDEX [ic_Submitter] ON [Submitter] ([name] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  UNIQUE  INDEX [i_u_gty_str] ON [UniGty]([gty_str])
+CREATE NONCLUSTERED INDEX [i_u_gty_str] ON [UniGty] ([gty_str] ASC)\r

 GO
 GO

-
- CREATE  UNIQUE  INDEX [i_u_allele_ids] ON [UniGty]([allele_id_1], [allele_id_2])
+CREATE NONCLUSTERED INDEX [i_u_allele_ids] ON [UniGty] ([allele_id_1] ASC,[allele_id_2] ASC)\r

 GO
 GO

-
- CREATE  INDEX [i_allele_id_2] ON [UniGty]([allele_id_2])
+CREATE NONCLUSTERED INDEX [i_allele_id_2] ON [UniGty] ([allele_id_2] ASC)\r

 GO
 
 GO
 

-
- CREATE  INDEX [i_allele_id] ON [UniVariAllele]([allele_id])
+CREATE NONCLUSTERED INDEX [i_allele_id] ON [UniVariAllele] ([allele_id] ASC)\r

 GO
 
 GO
 

-
- CREATE  UNIQUE  INDEX [i_u_var_str] ON [UniVariation]([var_str])
+CREATE NONCLUSTERED INDEX [i_u_var_str] ON [UniVariation] ([var_str] ASC)\r

 GO
 GO

-
- CREATE  INDEX [cv_uvid_class] ON [UniVariation]([univar_id], [subsnp_class])
+CREATE NONCLUSTERED INDEX [cv_uvid_class] ON [UniVariation] ([univar_id] ASC,[subsnp_class] ASC)\r

 GO
 
 
 GO
 
 

-
- CREATE  INDEX [i_allele_id] ON [VariAllele]([allele_id])
+CREATE NONCLUSTERED INDEX [i_allele_id] ON [VariAllele] ([allele_id] ASC)\r

 GO
 
 
 GO
 
 

- CREATE  UNIQUE  INDEX [i_u] ON [db_DataDictionaryNew]([tab], [col_order])
-GO

 
 
 
 
 
 


@@ -156,11 +120,7 @@ GO
 
 
 
 
 
 

-
-
-
- CREATE  UNIQUE  CLUSTERED  INDEX [i_gty] ON [dn_gty2unigty_trueSNP]([gty_id], [rev_flag])
+CREATE CLUSTERED INDEX [i_gty] ON [dn_gty2unigty_trueSNP] ([gty_id] ASC,[rev_flag] ASC)\r

 GO
 
 
 GO
 
 

-

diff --git a/schema/shared_schema/dbSNP_main_index_postgresql.sql b/schema/shared_schema/dbSNP_main_index_postgresql.sql
index 0bca28e74faed1e13abb5a730a38eb5039a23d66..4162f20f9452a72ba458f0e1081e0f516b10c811 100644 (file)
--- a/schema/shared_schema/dbSNP_main_index_postgresql.sql
+++ b/schema/shared_schema/dbSNP_main_index_postgresql.sql
@@ -1,126 +1,36 @@
- CREATE  UNIQUE  INDEX ON Allele(allele)\r
-;\r
- CREATE  INDEX ON Allele(rev_allele_id)\r
-;\r
-\r
-\r
- CREATE  INDEX ON AlleleMotif(motif_id)\r
-;\r
-\r
- CREATE  UNIQUE    INDEX ON AllocIds(name)\r
-;\r
-\r
- CREATE  INDEX ON Author(author)\r
-;\r
-\r
- CREATE  UNIQUE    INDEX ON Batch_tax_id(batch_id)\r
-;\r
-\r
-\r
-\r
-\r
-\r
-\r
- CREATE  INDEX ON GtyAllele(unigty_id)\r
-;\r
- CREATE  INDEX ON GtyAllele(gty_id)\r
-;\r
- CREATE  INDEX ON GtyAllele(gty_id)\r
-;\r
-\r
-\r
- CREATE  INDEX ON LoadHistory(loaddate)\r
-;\r
-\r
-\r
-\r
- CREATE  UNIQUE  INDEX ON Method(handle, loc_method_id)\r
-;\r
-\r
-\r
-\r
-\r
- CREATE  UNIQUE  INDEX ON Motif(motif)\r
-;\r
-\r
- CREATE  INDEX ON ObsGenotype(obs)\r
-;\r
- CREATE  INDEX ON ObsGenotype(obs_upp_fix)\r
-;\r
- CREATE  INDEX ON ObsGenotype(gty_id)\r
-;\r
-\r
- CREATE  UNIQUE  INDEX ON ObsVariation(pattern)\r
-;\r
- CREATE  INDEX ON ObsVariation(univar_id)\r
-;\r
-\r
-\r
- CREATE  UNIQUE    INDEX ON OrganismTax(organism)\r
-;\r
- CREATE  INDEX ON OrganismTax(tax_id)\r
-;\r
- CREATE  INDEX ON OrganismTax(species_tax_id)\r
-;\r
- CREATE  INDEX ON OrganismTax(database_name)\r
-;\r
-\r
-\r
-\r
- CREATE  UNIQUE    INDEX ON Publication(handle, title)\r
-;\r
-\r
-\r
- CREATE  INDEX ON SNP_tax_id(tax_id, snp_id)\r
-;\r
-\r
-\r
-\r
-\r
- CREATE  UNIQUE    INDEX ON SnpValidationCode(code)\r
-;\r
-\r
- CREATE  INDEX ON StrandCode(abbrev, rs_to_ss_orien, code)\r
-;\r
-\r
- CREATE  UNIQUE    INDEX ON SubSNPDelComm(comment_id)\r
-;\r
-\r
-\r
- CREATE  UNIQUE    INDEX ON Submitter(handle)\r
-;\r
- CREATE  INDEX ON Submitter(name)\r
-;\r
-\r
-\r
- CREATE  UNIQUE  INDEX ON UniGty(gty_str)\r
-;\r
- CREATE  UNIQUE  INDEX ON UniGty(allele_id_1, allele_id_2)\r
-;\r
- CREATE  INDEX ON UniGty(allele_id_2)\r
-;\r
-\r
- CREATE  INDEX ON UniVariAllele(allele_id)\r
-;\r
-\r
- CREATE  UNIQUE  INDEX ON UniVariation(var_str)\r
-;\r
- CREATE  INDEX ON UniVariation(univar_id, subsnp_class)\r
-;\r
-\r
-\r
- CREATE  INDEX ON VariAllele(allele_id)\r
-;\r
-\r
-\r
-\r
-\r
-\r
-\r
-\r
-\r
-\r
- CREATE  UNIQUE    INDEX ON dn_gty2unigty_trueSNP(gty_id, rev_flag)\r
-;\r
-\r
-\r
+CREATE INDEX ON Allele (allele);
+CREATE INDEX ON Allele (rev_allele_id);
+CREATE INDEX ON AlleleMotif (motif_id);
+CREATE INDEX ON AllocIds (name);
+CREATE INDEX ON Author (author);
+CREATE INDEX ON Batch_tax_id (batch_id);
+CREATE INDEX ON GtyAllele (unigty_id);
+CREATE INDEX ON GtyAllele (gty_id);
+CREATE INDEX ON GtyAllele (gty_id);
+CREATE INDEX ON LoadHistory (loaddate);
+CREATE INDEX ON Method (handle ASC,loc_method_id);
+CREATE INDEX ON Motif (motif);
+CREATE INDEX ON ObsGenotype (obs);
+CREATE INDEX ON ObsGenotype (obs_upp_fix);
+CREATE INDEX ON ObsGenotype (gty_id);
+CREATE INDEX ON ObsVariation (pattern);
+CREATE INDEX ON ObsVariation (univar_id);
+CREATE INDEX ON OrganismTax (organism);
+CREATE INDEX ON OrganismTax (tax_id);
+CREATE INDEX ON OrganismTax (species_tax_id);
+CREATE INDEX ON OrganismTax (database_name);
+CREATE INDEX ON Publication (handle ASC,title);
+CREATE INDEX ON SNP_tax_id (tax_id ASC,snp_id);
+CREATE INDEX ON SnpValidationCode (code);
+CREATE INDEX ON StrandCode (abbrev ASC,rs_to_ss_orien ASC,code);
+CREATE INDEX ON SubSNPDelComm (comment_id);
+CREATE INDEX ON Submitter (handle);
+CREATE INDEX ON Submitter (name);
+CREATE INDEX ON UniGty (gty_str);
+CREATE INDEX ON UniGty (allele_id_1 ASC,allele_id_2);
+CREATE INDEX ON UniGty (allele_id_2);
+CREATE INDEX ON UniVariAllele (allele_id);
+CREATE INDEX ON UniVariation (var_str);
+CREATE INDEX ON UniVariation (univar_id ASC,subsnp_class);
+CREATE INDEX ON VariAllele (allele_id);
+CREATE INDEX ON dn_gty2unigty_trueSNP (gty_id ASC,rev_flag);

diff --git a/schema/shared_schema/dbSNP_main_table.sql b/schema/shared_schema/dbSNP_main_table.sql
index c3d151b73095ad7dbb152aad76b932219a7af45e..ddfe6cf99acd8a9efca3af7ec6ec24a767fc9998 100644 (file)
--- a/schema/shared_schema/dbSNP_main_table.sql
+++ b/schema/shared_schema/dbSNP_main_table.sql
@@ -1,582 +1,578 @@
-CREATE TABLE [Allele] (
-       [allele_id] [int] NOT NULL ,
-       [allele] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [rev_allele_id] [int] NULL ,
-       [src] [varchar] (10) NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
+CREATE TABLE [Allele]
+(
+[allele_id] [int] NOT NULL ,
+[allele] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[rev_allele_id] [int] NULL ,
+[src] [varchar](10) NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [AlleleFlagCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](12) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [AlleleMotif]
+(
+[allele_id] [int] NOT NULL ,
+[motif_order] [int] NOT NULL ,
+[motif_id] [int] NOT NULL ,
+[repeat_cnt] [real] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [AllocIds]
+(
+[name] [varchar](30) NOT NULL ,
+[id] [int] NOT NULL ,
+[cycle] [int] NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[comment] [varchar](255) NULL
+)\r
+GO
+
+CREATE TABLE [Author]
+(
+[pub_id] [int] NOT NULL ,
+[position] [tinyint] NOT NULL ,
+[author] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [Batch_tax_id]
+(
+[batch_id] [int] NOT NULL ,
+[tax_id] [int] NOT NULL ,
+[update_time] [datetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [ChiSqPValueLookUp]
+(
+[df] [tinyint] NOT NULL ,
+[chisq_from] [float] NOT NULL ,
+[chisq_to] [float] NOT NULL ,
+[pvalue_upper_bound] [float] NOT NULL
+)\r
+GO
+
+CREATE TABLE [CpGCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](12) NOT NULL ,
+[descrip] [varchar](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [GenBankDivisionCode]
+(
+[code] [varchar](6) NOT NULL ,
+[abbrev] [varchar](40) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[display_order] [tinyint] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [GenderCode]
+(
+[code] [char](1) NOT NULL ,
+[gender] [varchar](6) NOT NULL
+)\r
+GO
+
+CREATE TABLE [GenomeBuildInfo]
+(
+[snp_build_id] [int] NOT NULL ,
+[tax_id] [int] NOT NULL ,
+[database_name] [varchar](32) NOT NULL ,
+[ncbi_build_id] [int] NOT NULL ,
+[ncbi_build_ver] [tinyint] NOT NULL ,
+[insert_time] [smalldatetime] NOT NULL ,
+[is_major] [tinyint] NOT NULL ,
+[ncbi_genome_tax_id] [int] NOT NULL ,
+[ref_assembly] [varchar](32) NULL ,
+[annot_set_acc] [varchar](32) NULL ,
+[annot_set_ver] [smallint] NULL
+)\r
+GO
+
+CREATE TABLE [GtyAllele]
+(
+[gty_id] [int] NOT NULL ,
+[rev_flag] [bit] NOT NULL ,
+[chr_num] [tinyint] NOT NULL ,
+[fwd_allele_id] [int] NOT NULL ,
+[unigty_id] [int] NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [IUPACna]
+(
+[allele] [varchar](1) NOT NULL ,
+[meaning] [varchar](10) NOT NULL ,
+[bitcode] [varchar](4) NOT NULL ,
+[value] [tinyint] NOT NULL ,
+[rev_base] [char](1) NULL
+)\r
+GO
+
+CREATE TABLE [LoadHistory]
+(
+[build_id] [int] NOT NULL ,
+[loaddate] [smalldatetime] NOT NULL ,
+[status] [char](30) NOT NULL ,
+[comments] [varchar](255) NULL ,
+[script] [varchar](255) NULL ,
+[ftp_done_date] [smalldatetime] NULL ,
+[entrez_done_date] [smalldatetime] NULL ,
+[blastdb_done_date] [smalldatetime] NULL ,
+[web_date] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [LocTypeCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](12) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [MapLinkCode]
+(
+[which_code] [varchar](20) NOT NULL ,
+[code] [tinyint] NOT NULL ,
+[abbr] [varchar](10) NULL ,
+[note] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [Method]
+(
+[method_id] [int] NOT NULL ,
+[handle] [varchar](20) NOT NULL ,
+[loc_method_id] [varchar](64) NOT NULL ,
+[loc_method_id_upp] [varchar](64) NOT NULL ,
+[method_class] [tinyint] NULL ,
+[template_type] [tinyint] NULL ,
+[seq_both_strands] [varchar](3) NULL ,
+[mult_pcr_amplification] [varchar](3) NULL ,
+[mult_clones_tested] [varchar](3) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [MethodClass]
+(
+[meth_class_id] [tinyint] NOT NULL ,
+[name] [varchar](64) NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[validation_status] [tinyint] NOT NULL
+)\r
+GO
+
+CREATE TABLE [MethodLine]
+(
+[method_id] [int] NOT NULL ,
+[line_num] [tinyint] NOT NULL ,
+[line] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [Moltype]
+(
+[code] [tinyint] NOT NULL ,
+[moltype] [varchar](10) NOT NULL ,
+[descrip] [varchar](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [Motif]
+(
+[motif_id] [int] NOT NULL ,
+[motif] [varchar](253) NOT NULL ,
+[rev_motif_id] [int] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [ObsGenotype]
+(
+[gty_id] [int] NOT NULL ,
+[obs] [varchar](512) NOT NULL ,
+[obs_upp_fix] [varchar](512) NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [ObsVariation]
+(
+[var_id] [int] NOT NULL ,
+[pattern] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NULL ,
+[univar_id] [int] NULL ,
+[var_flag] [tinyint] NULL
+)\r
+GO
+
+CREATE TABLE [OrgDbStatus]
+(
+[database_name] [varchar](32) NOT NULL ,
+[SNP_cnt] [int] NULL ,
+[SubSNP_cnt] [int] NULL ,
+[cluster_cnt] [int] NULL ,
+[unmapped_rs_cnt] [int] NULL ,
+[SubInd_cnt] [int] NULL ,
+[ind_cnt] [int] NULL ,
+[SubInd_ss_cnt] [int] NULL ,
+[SubPop_cnt] [int] NULL ,
+[pop_cnt] [int] NULL ,
+[SubPop_ss_cnt] [int] NULL ,
+[GtyFreqBySsPop_ss_cnt] [int] NULL ,
+[AlleleFreqBySsPop_ss_cnt] [int] NULL ,
+[SNPGtyFreq_rs_cnt] [int] NULL ,
+[SNPAlleleFreq_rs_cnt] [int] NULL ,
+[snp_build_max] [int] NULL ,
+[genome_build_max] [varchar](8) NULL ,
+[map_time] [smalldatetime] NULL ,
+[cluster_time_max] [smalldatetime] NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_SNPBatch_time] [smalldatetime] NULL ,
+[last_POPBatch_time] [smalldatetime] NULL ,
+[last_INDBatch_time] [smalldatetime] NULL ,
+[rsMax] [int] NULL ,
+[rsMissenseMax] [int] NULL ,
+[copy2FTP_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [OrganismTax]
+(
+[organism] [varchar](128) NOT NULL ,
+[tax_id] [int] NOT NULL ,
+[common_name] [varchar](32) NULL ,
+[gpipe_abbr] [varchar](7) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[comment] [varchar](255) NULL ,
+[division_cd] [varchar](6) NULL ,
+[database_name] [varchar](32) NOT NULL ,
+[short_common_name] [varchar](32) NOT NULL ,
+[tax_id_rank] [varchar](5) NOT NULL ,
+[species_tax_id] [int] NOT NULL ,
+[no_freq_summary] [bit] NULL ,
+[entrez_index] [smallint] NULL ,
+[pub_genome_build] [decimal] NULL
+)\r
+GO
+
+CREATE TABLE [PopClass]
+(
+[pop_id] [int] NOT NULL ,
+[pop_class_id] [int] NOT NULL ,
+[snp_count] [int] NULL
+)\r
+GO
+
+CREATE TABLE [PopClassCode]
+(
+[pop_class_id] [int] NOT NULL ,
+[pop_class] [char](50) NOT NULL ,
+[pop_class_text] [char](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [Publication]
+(
+[pub_id] [int] NOT NULL ,
+[pmid] [int] NULL ,
+[handle] [varchar](20) NOT NULL ,
+[meduid] [int] NULL ,
+[title] [varchar](235) NOT NULL ,
+[journal] [varchar](255) NULL ,
+[vol] [varchar](255) NULL ,
+[suppl] [varchar](128) NULL ,
+[issue] [varchar](128) NULL ,
+[i_suppl] [varchar](128) NULL ,
+[pages] [varchar](255) NULL ,
+[year] [smallint] NOT NULL ,
+[status] [tinyint] NOT NULL ,
+[blobflag] [tinyint] NULL ,
+[last_updated] [smalldatetime] NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [SNPGlossary]
+(
+[term] [varchar](256) NOT NULL ,
+[description] [varchar](4000) NULL ,
+[last_updated] [smalldatetime] NULL ,
+[used_in] [varchar](32) NULL
+)\r
+GO
+
+CREATE TABLE [SNP_tax_id]
+(
+[snp_id] [int] NOT NULL ,
+[tax_id] [int] NULL ,
+[update_time] [smalldatetime] NULL ,
+[status] [char](1) NULL
+)\r
+GO
+
+CREATE TABLE [SnpChrCode]
+(
+[code] [varchar](8) NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[sort_order] [tinyint] NULL ,
+[db_name] [varchar](32) NULL ,
+[NC_acc] [varchar](16) NULL
+)\r
+GO
+
+CREATE TABLE [SnpClassCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[display_str] [varchar](255) NULL
+)\r
+GO
+
+CREATE TABLE [SnpFunctionCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[top_level_class] [char](5) NOT NULL ,
+[is_coding] [tinyint] NOT NULL ,
+[is_exon] [bit] NULL ,
+[var_prop_loc_code] [int] NULL ,
+[var_prop_effect_code] [int] NULL
+)\r
+GO
+
+CREATE TABLE [SnpValidationCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](64) NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [StrandCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[rs_to_ss_orien] [bit] NOT NULL ,
+[descrip] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [SubSNPDelComm]
+(
+[comment_id] [smallint] NOT NULL ,
+[comment] [varchar](255) NOT NULL ,
+[create_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [SubSNPSeqTypeCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[descrip] [varchar](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [Submitter]
+(
+[handle] [varchar](20) NOT NULL ,
+[name] [varchar](255) NOT NULL ,
+[fax] [varchar](255) NULL ,
+[phone] [varchar](255) NULL ,
+[email] [varchar](255) NULL ,
+[lab] [varchar](255) NULL ,
+[institution] [varchar](255) NULL ,
+[address] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_updated_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [TemplateType]
+(
+[temp_type_id] [tinyint] NOT NULL ,
+[name] [varchar](64) NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [UniGty]
+(
+[unigty_id] [int] NOT NULL ,
+[gty_str] [varchar](255) NULL ,
+[allele_id_1] [int] NOT NULL ,
+[allele_id_2] [int] NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [UniVariAllele]
+(
+[univar_id] [int] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [UniVariation]
+(
+[univar_id] [int] NOT NULL ,
+[var_str] [varchar](900) NULL ,
+[allele_cnt] [smallint] NOT NULL ,
+[subsnp_class] [tinyint] NOT NULL ,
+[iupack_code] [char](1) NOT NULL ,
+[top_or_bot_strand] [char](1) NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL ,
+[src_code] [tinyint] NULL ,
+[rev_univar_id] [int] NULL
+)\r
+GO
+
+CREATE TABLE [UniVariationSrcCode]
+(
+[code] [tinyint] NOT NULL ,
+[abbrev] [varchar](20) NOT NULL ,
+[descrip] [varchar](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [VariAllele]
+(
+[var_id] [int] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [db_ftp_table_list]
+(
+[table_name] [varchar](32) NOT NULL ,
+[db_str] [varchar](64) NOT NULL ,
+[create_time] [smalldatetime] NULL
+)\r
+GO
+
+CREATE TABLE [db_map_table_name]
+(
+[table_name] [varchar](32) NOT NULL ,
+[to_index] [bit] NULL ,
+[isCurrent] [char](1) NULL ,
+[inNonHuman] [char](1) NOT NULL
+)\r
+GO
+
+CREATE TABLE [dn_Allele_rev]
+(
+[allele_id] [int] NOT NULL ,
+[rev_flag] [tinyint] NOT NULL ,
+[fwd_allele_id] [int] NOT NULL ,
+[fwd_allele] [varchar](255) NOT NULL
+)\r
+GO
+
+CREATE TABLE [dn_Motif_rev]
+(
+[motif_id] [int] NOT NULL ,
+[rev_flag] [tinyint] NOT NULL ,
+[fwd_motif] [varchar](253) NULL ,
+[fwd_motif_id] [int] NULL
+)\r
+GO
+
+CREATE TABLE [dn_UniGty_allele]
+(
+[unigty_id] [int] NOT NULL ,
+[chr_num] [tinyint] NOT NULL ,
+[allele_id] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL
+)\r
+GO
+
+CREATE TABLE [dn_UniGty_rev]
+(
+[unigty_id] [int] NOT NULL ,
+[rev_flag] [tinyint] NOT NULL ,
+[fwd_unigty_id] [int] NOT NULL ,
+[fwd_gty_str] [varchar](255) NULL
+)\r
+GO
+
+CREATE TABLE [dn_UniVariation_rev]
+(
+[univar_id] [int] NOT NULL ,
+[rev_flag] [tinyint] NOT NULL ,
+[fwd_univar_id] [int] NULL ,
+[fwd_univar_str] [varchar](900) NULL
+)\r
+GO
+
+CREATE TABLE [dn_baseFlip]
+(
+[base] [char](1) NULL ,
+[rev_flag] [tinyint] NULL ,
+[fwd_base] [char](1) NULL
+)\r
+GO
+
+CREATE TABLE [dn_gty2unigty_trueSNP]
+(
+[gty_id] [int] NOT NULL ,
+[rev_flag] [bit] NOT NULL ,
+[unigty_id] [int] NULL ,
+[obs] [varchar](512) NOT NULL ,
+[gty_str] [varchar](255) NULL
+)\r
+GO
+
+CREATE TABLE [dn_summary]
+(
+[tax_id] [int] NOT NULL ,
+[build_id] [int] NOT NULL ,
+[type] [varchar](20) NOT NULL ,
+[cnt] [int] NOT NULL ,
+[create_time] [smalldatetime] NOT NULL ,
+[last_updated_time] [smalldatetime] NOT NULL
+)\r

 GO
 
 GO
 

-
-CREATE TABLE [AlleleFlagCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (12) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [AlleleMotif] (
-       [allele_id] [int] NOT NULL ,
-       [motif_order] [int] NOT NULL ,
-       [motif_id] [int] NOT NULL ,
-       [repeat_cnt] [real] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [AllocIds] (
-       [name] [varchar] (30) NOT NULL ,
-       [id] [int] NOT NULL ,
-       [cycle] [int] NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [Author] (
-       [pub_id] [int] NOT NULL ,
-       [position] [tinyint] NOT NULL ,
-       [author] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [Batch_tax_id] (
-       [batch_id] [int] NOT NULL ,
-       [tax_id] [int] NOT NULL ,
-       [update_time] [datetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [ChiSqPValueLookUp] (
-       [df] [tinyint] NOT NULL ,
-       [chisq_from] [float] NOT NULL ,
-       [chisq_to] [float] NOT NULL ,
-       [pvalue_upper_bound] [float] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [CpGCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (12) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [GenBankDivisionCode] (
-       [code] [varchar] (6) NOT NULL ,
-       [abbrev] [varchar] (40) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [display_order] [tinyint] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [GenderCode] (
-       [code] [char] (1) NOT NULL ,
-       [gender] [varchar] (6) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [GenomeBuildInfo] (
-       [snp_build_id] [int] NOT NULL ,
-       [tax_id] [int] NOT NULL ,
-       [database_name] [varchar] (32) NOT NULL ,
-       [ncbi_build_id] [int] NOT NULL ,
-       [ncbi_build_ver] [tinyint] NOT NULL ,
-       [insert_time] [smalldatetime] NOT NULL ,
-       [is_major] [tinyint] NOT NULL ,
-       [ncbi_genome_tax_id] [int] NOT NULL ,
-       [ref_assembly] [varchar] (255) NULL 
-)
-GO
-
-
-CREATE TABLE [GtyAllele] (
-       [gty_id] [int] NOT NULL ,
-       [rev_flag] [bit] NOT NULL ,
-       [chr_num] [tinyint] NOT NULL ,
-       [fwd_allele_id] [int] NOT NULL ,
-       [unigty_id] [int] NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [IUPACna] (
-       [allele] [varchar] (1) NOT NULL ,
-       [meaning] [varchar] (10) NOT NULL ,
-       [bitcode] [varchar] (4) NOT NULL ,
-       [value] [tinyint] NOT NULL ,
-       [rev_base] [char] (1) NULL 
-)
-GO
-
-
-CREATE TABLE [LoadHistory] (
-       [build_id] [int] NOT NULL ,
-       [loaddate] [smalldatetime] NOT NULL ,
-       [status] [char] (30) NOT NULL ,
-       [comments] [varchar] (255) NULL ,
-       [script] [varchar] (255) NULL ,
-       [ftp_done_date] [smalldatetime] NULL ,
-       [entrez_done_date] [smalldatetime] NULL ,
-       [blastdb_done_date] [smalldatetime] NULL ,
-       [web_date] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [LocTypeCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (12) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [MapLinkCode] (
-       [which_code] [varchar] (20) NOT NULL ,
-       [code] [tinyint] NOT NULL ,
-       [abbr] [varchar] (10) NULL ,
-       [note] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [Method] (
-       [method_id] [int] NOT NULL ,
-       [handle] [varchar] (20) NOT NULL ,
-       [loc_method_id] [varchar] (64) NOT NULL ,
-       [loc_method_id_upp] [varchar] (64) NOT NULL ,
-       [method_class] [tinyint] NULL ,
-       [template_type] [tinyint] NULL ,
-       [seq_both_strands] [varchar] (3) NULL ,
-       [mult_pcr_amplification] [varchar] (3) NULL ,
-       [mult_clones_tested] [varchar] (3) NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [MethodClass] (
-       [meth_class_id] [tinyint] NOT NULL ,
-       [name] [varchar] (64) NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [validation_status] [tinyint] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [MethodLine] (
-       [method_id] [int] NOT NULL ,
-       [line_num] [tinyint] NOT NULL ,
-       [line] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [Moltype] (
-       [code] [tinyint] NOT NULL ,
-       [moltype] [varchar] (10) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [Motif] (
-       [motif_id] [int] NOT NULL ,
-       [motif] [varchar] (253) NOT NULL ,
-       [rev_motif_id] [int] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [ObsGenotype] (
-       [gty_id] [int] NOT NULL ,
-       [obs] [varchar] (512) NOT NULL ,
-       [obs_upp_fix] [varchar] (512) NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [ObsVariation] (
-       [var_id] [int] NOT NULL ,
-       [pattern] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NULL ,
-       [univar_id] [int] NULL ,
-       [var_flag] [tinyint] NULL 
-)
-GO
-
-
-CREATE TABLE [OrgDbStatus] (
-       [database_name] [varchar] (32) NOT NULL ,
-       [SNP_cnt] [int] NULL ,
-       [SubSNP_cnt] [int] NULL ,
-       [cluster_cnt] [int] NULL ,
-       [unmapped_rs_cnt] [int] NULL ,
-       [SubInd_cnt] [int] NULL ,
-       [ind_cnt] [int] NULL ,
-       [SubInd_ss_cnt] [int] NULL ,
-       [SubPop_cnt] [int] NULL ,
-       [pop_cnt] [int] NULL ,
-       [SubPop_ss_cnt] [int] NULL ,
-       [GtyFreqBySsPop_ss_cnt] [int] NULL ,
-       [AlleleFreqBySsPop_ss_cnt] [int] NULL ,
-       [SNPGtyFreq_rs_cnt] [int] NULL ,
-       [SNPAlleleFreq_rs_cnt] [int] NULL ,
-       [snp_build_max] [int] NULL ,
-       [genome_build_max] [varchar] (8) NULL ,
-       [map_time] [smalldatetime] NULL ,
-       [cluster_time_max] [smalldatetime] NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_SNPBatch_time] [smalldatetime] NULL ,
-       [last_POPBatch_time] [smalldatetime] NULL ,
-       [last_INDBatch_time] [smalldatetime] NULL ,
-       [rsMax] [int] NULL ,
-       [rsMissenseMax] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [OrganismTax] (
-       [organism] [varchar] (40) NOT NULL ,
-       [tax_id] [int] NOT NULL ,
-       [common_name] [varchar] (32) NULL ,
-       [gpipe_abbr] [varchar] (7) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [comment] [varchar] (255) NULL ,
-       [division_cd] [varchar] (6) NULL ,
-       [database_name] [varchar] (32) NOT NULL ,
-       [short_common_name] [varchar] (32) NOT NULL ,
-       [tax_id_rank] [varchar] (5) NOT NULL ,
-       [species_tax_id] [int] NOT NULL ,
-       [no_freq_summary] [bit] NULL ,
-       [entrez_index] [smallint] NULL ,
-       [pub_genome_build] [decimal](4, 1) NULL 
-)
-GO
-
-
-CREATE TABLE [PopClass] (
-       [pop_id] [int] NOT NULL ,
-       [pop_class_id] [int] NOT NULL ,
-       [snp_count] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [PopClassCode] (
-       [pop_class_id] [int] NOT NULL ,
-       [pop_class] [char] (50) NOT NULL ,
-       [pop_class_text] [char] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [Publication] (
-       [pub_id] [int] NOT NULL ,
-       [pmid] [int] NULL ,
-       [handle] [varchar] (20) NOT NULL ,
-       [meduid] [int] NULL ,
-       [title] [varchar] (235) NOT NULL ,
-       [journal] [varchar] (255) NULL ,
-       [vol] [varchar] (255) NULL ,
-       [suppl] [varchar] (128) NULL ,
-       [issue] [varchar] (128) NULL ,
-       [i_suppl] [varchar] (128) NULL ,
-       [pages] [varchar] (255) NULL ,
-       [year] [smallint] NOT NULL ,
-       [status] [tinyint] NOT NULL ,
-       [blobflag] [tinyint] NULL ,
-       [last_updated] [smalldatetime] NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [SNPGlossary] (
-       [term] [varchar] (256) NOT NULL ,
-       [description] [varchar] (4000) NULL ,
-       [last_updated] [smalldatetime] NULL ,
-       [used_in] [varchar] (32) NULL 
-)
-GO
-
-
-CREATE TABLE [SNP_tax_id] (
-       [snp_id] [int] NOT NULL ,
-       [tax_id] [int] NULL ,
-       [update_time] [smalldatetime] NULL ,
-       [status] [char] (1) NULL 
-)
-GO
-
-
-CREATE TABLE [SnpChrCode] (
-       [code] [varchar] (8) NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [sort_order] [tinyint] NULL ,
-       [db_name] [varchar] (32) NULL 
-)
-GO
-
-
-CREATE TABLE [SnpClassCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [display_str] [varchar] (255) NULL 
-)
-GO
-
-
-CREATE TABLE [SnpFunctionCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [top_level_class] [char] (5) NOT NULL ,
-       [is_coding] [tinyint] NOT NULL ,
-       [is_exon] [bit] NULL 
-)
-GO
-
-
-CREATE TABLE [SnpValidationCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (40) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [StrandCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [rs_to_ss_orien] [bit] NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [SubSNPDelComm] (
-       [comment_id] [smallint] NOT NULL ,
-       [comment] [varchar] (255) NOT NULL ,
-       [create_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [SubSNPSeqTypeCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [Submitter] (
-       [handle] [varchar] (20) NOT NULL ,
-       [name] [varchar] (255) NOT NULL ,
-       [fax] [varchar] (255) NULL ,
-       [phone] [varchar] (255) NULL ,
-       [email] [varchar] (255) NULL ,
-       [lab] [varchar] (255) NULL ,
-       [institution] [varchar] (255) NULL ,
-       [address] [varchar] (255) NULL ,
-       [create_time] [smalldatetime] NULL ,
-       [last_updated_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [TemplateType] (
-       [temp_type_id] [tinyint] NOT NULL ,
-       [name] [varchar] (64) NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [UniGty] (
-       [unigty_id] [int] NOT NULL ,
-       [gty_str] [varchar] (255) NULL ,
-       [allele_id_1] [int] NOT NULL ,
-       [allele_id_2] [int] NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [UniVariAllele] (
-       [univar_id] [int] NOT NULL ,
-       [allele_id] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [UniVariation] (
-       [univar_id] [int] NOT NULL ,
-       [var_str] [varchar] (900) NULL ,
-       [allele_cnt] [smallint] NOT NULL ,
-       [subsnp_class] [tinyint] NOT NULL ,
-       [iupack_code] [char] (1) NOT NULL ,
-       [top_or_bot_strand] [char] (1) NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL ,
-       [src_code] [tinyint] NULL ,
-       [rev_univar_id] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [UniVariationSrcCode] (
-       [code] [tinyint] NOT NULL ,
-       [abbrev] [varchar] (20) NOT NULL ,
-       [descrip] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [VariAllele] (
-       [var_id] [int] NOT NULL ,
-       [allele_id] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [db_DataDictionaryNew] (
-       [tab] [varchar] (64) NULL ,
-       [col] [varchar] (32) NULL ,
-       [col_order] [int] NULL ,
-       [typ] [varchar] (16) NULL ,
-       [length] [int] NULL ,
-       [description] [varchar] (6000) NULL ,
-       [todo] [varchar] (1000) NULL ,
-       [update_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [db_ftp_table_list] (
-       [table_name] [varchar] (32) NOT NULL ,
-       [db_str] [varchar] (64) NOT NULL ,
-       [create_time] [smalldatetime] NULL 
-)
-GO
-
-
-CREATE TABLE [db_map_table_name] (
-       [table_name] [varchar] (32) NOT NULL ,
-       [to_index] [bit] NULL 
-)
-GO
-
-
-CREATE TABLE [dn_Allele_rev] (
-       [allele_id] [int] NOT NULL ,
-       [rev_flag] [tinyint] NOT NULL ,
-       [fwd_allele_id] [int] NOT NULL ,
-       [fwd_allele] [varchar] (255) NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_Motif_rev] (
-       [motif_id] [int] NOT NULL ,
-       [rev_flag] [tinyint] NOT NULL ,
-       [fwd_motif] [varchar] (253) NULL ,
-       [fwd_motif_id] [int] NULL 
-)
-GO
-
-
-CREATE TABLE [dn_UniGty_allele] (
-       [unigty_id] [int] NOT NULL ,
-       [chr_num] [tinyint] NOT NULL ,
-       [allele_id] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL 
-)
-GO
-
-
-CREATE TABLE [dn_UniGty_rev] (
-       [unigty_id] [int] NOT NULL ,
-       [rev_flag] [tinyint] NOT NULL ,
-       [fwd_unigty_id] [int] NOT NULL ,
-       [fwd_gty_str] [varchar] (255) NULL 
-)
-GO
-
-
-CREATE TABLE [dn_UniVariation_rev] (
-       [univar_id] [int] NOT NULL ,
-       [rev_flag] [tinyint] NOT NULL ,
-       [fwd_univar_id] [int] NULL ,
-       [fwd_univar_str] [varchar] (900) NULL 
-)
-GO
-
-
-CREATE TABLE [dn_baseFlip] (
-       [base] [char] (1) NULL ,
-       [rev_flag] [tinyint] NULL ,
-       [fwd_base] [char] (1) NULL 
-)
-GO
-
-
-CREATE TABLE [dn_gty2unigty_trueSNP] (
-       [gty_id] [int] NOT NULL ,
-       [rev_flag] [bit] NOT NULL ,
-       [unigty_id] [int] NULL ,
-       [obs] [varchar] (512) NOT NULL ,
-       [gty_str] [varchar] (255) NULL 
-)
-GO
-
-
-CREATE TABLE [dn_summary] (
-       [tax_id] [int] NOT NULL ,
-       [build_id] [int] NOT NULL ,
-       [type] [varchar] (20) NOT NULL ,
-       [cnt] [int] NOT NULL ,
-       [create_time] [smalldatetime] NOT NULL ,
-       [last_updated_time] [smalldatetime] NOT NULL 
-)
-GO
-
-

diff --git a/schema/shared_schema/dbSNP_main_table_postgresql.sql b/schema/shared_schema/dbSNP_main_table_postgresql.sql
index 24295b07fea7ad3da780d4b4dd6708814d2c212e..210b47058386e3a7ed9aa508389791d6d77a6e33 100644 (file)
--- a/schema/shared_schema/dbSNP_main_table_postgresql.sql
+++ b/schema/shared_schema/dbSNP_main_table_postgresql.sql
@@ -1,520 +1,470 @@
-CREATE TABLE Allele (\r
-       allele_id int NOT NULL ,\r
-       allele varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       rev_allele_id int NULL ,\r
-       src varchar (10) NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE AlleleFlagCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (12) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE AlleleMotif (\r
-       allele_id int NOT NULL ,\r
-       motif_order int NOT NULL ,\r
-       motif_id int NOT NULL ,\r
-       repeat_cnt real NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE AllocIds (\r
-       name varchar (30) NOT NULL ,\r
-       id int NOT NULL ,\r
-       cycle int NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL ,\r
-       comment varchar (255) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Author (\r
-       pub_id int NOT NULL ,\r
-       position smallint NOT NULL ,\r
-       author varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Batch_tax_id (\r
-       batch_id int NOT NULL ,\r
-       tax_id int NOT NULL ,\r
-       update_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE ChiSqPValueLookUp (\r
-       df smallint NOT NULL ,\r
-       chisq_from float NOT NULL ,\r
-       chisq_to float NOT NULL ,\r
-       pvalue_upper_bound float NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE CpGCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (12) NOT NULL ,\r
-       descrip varchar (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE GenBankDivisionCode (\r
-       code varchar (6) NOT NULL ,\r
-       abbrev varchar (40) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       display_order smallint NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE GenderCode (\r
-       code char (1) NOT NULL ,\r
-       gender varchar (6) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE GenomeBuildInfo (\r
-       snp_build_id int NOT NULL ,\r
-       tax_id int NOT NULL ,\r
-       database_name varchar (32) NOT NULL ,\r
-       ncbi_build_id int NOT NULL ,\r
-       ncbi_build_ver smallint NOT NULL ,\r
-       insert_time TIMESTAMP DEFAULT NOW() NOT NULL ,\r
-       is_major smallint DEFAULT 1 NOT NULL ,\r
-       ncbi_genome_tax_id int DEFAULT 1 NOT NULL ,\r
-       ref_assembly varchar (255) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE GtyAllele (\r
-       gty_id int NOT NULL ,\r
-       rev_flag bit NOT NULL ,\r
-       chr_num smallint NOT NULL ,\r
-       fwd_allele_id int NOT NULL ,\r
-       unigty_id int NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE IUPACna (\r
-       allele varchar (1) NOT NULL ,\r
-       meaning varchar (10) NOT NULL ,\r
-       bitcode varchar (4) NOT NULL ,\r
-       value smallint NOT NULL ,\r
-       rev_base char (1) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE LoadHistory (\r
-       build_id int NOT NULL ,\r
-       loaddate TIMESTAMP NOT NULL ,\r
-       status char (30) NOT NULL ,\r
-       comments varchar (255) NULL ,\r
-       script varchar (255) NULL ,\r
-       ftp_done_date TIMESTAMP NULL ,\r
-       entrez_done_date TIMESTAMP NULL ,\r
-       blastdb_done_date TIMESTAMP NULL ,\r
-       web_date TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE LocTypeCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (12) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP DEFAULT NOW() NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE MapLinkCode (\r
-       which_code varchar (20) NOT NULL ,\r
-       code smallint NOT NULL ,\r
-       abbr varchar (10) NULL ,\r
-       note varchar (255) NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Method (\r
-       method_id int NOT NULL ,\r
-       handle varchar (20) NOT NULL ,\r
-       loc_method_id varchar (64) NOT NULL ,\r
-       loc_method_id_upp varchar (64) NOT NULL ,\r
-       method_class smallint NULL ,\r
-       template_type smallint NULL ,\r
-       seq_both_strands varchar (3) NULL ,\r
-       mult_pcr_amplification varchar (3) NULL ,\r
-       mult_clones_tested varchar (3) NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE MethodClass (\r
-       meth_class_id smallint NOT NULL ,\r
-       name varchar (64) NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL ,\r
-       validation_status smallint NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE MethodLine (\r
-       method_id int NOT NULL ,\r
-       line_num smallint NOT NULL ,\r
-       line varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Moltype (\r
-       code smallint NOT NULL ,\r
-       moltype varchar (10) NOT NULL ,\r
-       descrip varchar (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Motif (\r
-       motif_id int NOT NULL ,\r
-       motif varchar (253) NOT NULL ,\r
-       rev_motif_id int NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE ObsGenotype (\r
-       gty_id int NOT NULL ,\r
-       obs varchar (512) NOT NULL ,\r
-       obs_upp_fix varchar (512) NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE ObsVariation (\r
-       var_id int NOT NULL ,\r
-       pattern varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP DEFAULT NOW() NOT NULL ,\r
-       last_updated_time TIMESTAMP DEFAULT NOW() NULL ,\r
-       univar_id int NULL ,\r
-       var_flag smallint NULL \r
-)\r
-;\r
-\r
-CREATE TABLE OrgDbStatus (\r
-       database_name varchar (32) NOT NULL ,\r
-       SNP_cnt int NULL ,\r
-       SubSNP_cnt int NULL ,\r
-       cluster_cnt int NULL ,\r
-       unmapped_rs_cnt int NULL ,\r
-       SubInd_cnt int NULL ,\r
-       ind_cnt int NULL ,\r
-       SubInd_ss_cnt int NULL ,\r
-       SubPop_cnt int NULL ,\r
-       pop_cnt int NULL ,\r
-       SubPop_ss_cnt int NULL ,\r
-       GtyFreqBySsPop_ss_cnt int NULL ,\r
-       AlleleFreqBySsPop_ss_cnt int NULL ,\r
-       SNPGtyFreq_rs_cnt int NULL ,\r
-       SNPAlleleFreq_rs_cnt int NULL ,\r
-       snp_build_max int NULL ,\r
-       genome_build_max varchar (8) NULL ,\r
-       map_time TIMESTAMP NULL ,\r
-       cluster_time_max TIMESTAMP NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_SNPBatch_time TIMESTAMP NULL ,\r
-       last_POPBatch_time TIMESTAMP NULL ,\r
-       last_INDBatch_time TIMESTAMP NULL ,\r
-       rsMax int NULL ,\r
-       rsMissenseMax int NULL ,\r
-       copy2FTP_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE OrganismTax (\r
-       organism varchar (40) NOT NULL ,\r
-       tax_id int NOT NULL ,\r
-       common_name varchar (32) NULL ,\r
-       gpipe_abbr varchar (7) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL ,\r
-       comment varchar (255) NULL ,\r
-       division_cd varchar (6) NULL ,\r
-       database_name varchar (32) NOT NULL ,\r
-       short_common_name varchar (32) NOT NULL ,\r
-       tax_id_rank varchar (5) NOT NULL ,\r
-       species_tax_id int NOT NULL ,\r
-       no_freq_summary bit NULL ,\r
-       entrez_index smallint NULL ,\r
-       pub_genome_build decimal(4, 1) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE PopClass (\r
-       pop_id int NOT NULL ,\r
-       pop_class_id int NOT NULL ,\r
-       snp_count int NULL \r
-)\r
-;\r
-\r
-CREATE TABLE PopClassCode (\r
-       pop_class_id int NOT NULL ,\r
-       pop_class char (50) NOT NULL ,\r
-       pop_class_text char (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Publication (\r
-       pub_id int NOT NULL ,\r
-       pmid int NULL ,\r
-       handle varchar (20) NOT NULL ,\r
-       meduid int NULL ,\r
-       title varchar (235) NOT NULL ,\r
-       journal varchar (255) NULL ,\r
-       vol varchar (255) NULL ,\r
-       suppl varchar (128) NULL ,\r
-       issue varchar (128) NULL ,\r
-       i_suppl varchar (128) NULL ,\r
-       pages varchar (255) NULL ,\r
-       year smallint NOT NULL ,\r
-       status smallint NOT NULL ,\r
-       blobflag smallint NULL ,\r
-       last_updated TIMESTAMP NOT NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SNPGlossary (\r
-       term varchar (256) NOT NULL ,\r
-       description varchar (4000) NULL ,\r
-       last_updated TIMESTAMP DEFAULT NOW() NULL ,\r
-       used_in varchar (32) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SNP_tax_id (\r
-       snp_id int NOT NULL ,\r
-       tax_id int NULL ,\r
-       update_time TIMESTAMP NULL ,\r
-       status char (1) DEFAULT 'C' NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SnpChrCode (\r
-       code varchar (8) NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       sort_order smallint NULL ,\r
-       db_name varchar (32) NULL ,\r
-       NC_acc varchar (16) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SnpClassCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       display_str varchar (255) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SnpFunctionCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       top_level_class char (5) NOT NULL ,\r
-       is_coding smallint NOT NULL ,\r
-       is_exon bit NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SnpValidationCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (64) NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE StrandCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       rs_to_ss_orien bit NOT NULL ,\r
-       descrip varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SubSNPDelComm (\r
-       comment_id smallint NOT NULL ,\r
-       comment varchar (255) NOT NULL ,\r
-       create_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE SubSNPSeqTypeCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       descrip varchar (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE Submitter (\r
-       handle varchar (20) NOT NULL ,\r
-       name varchar (255) NOT NULL ,\r
-       fax varchar (255) NULL ,\r
-       phone varchar (255) NULL ,\r
-       email varchar (255) NULL ,\r
-       lab varchar (255) NULL ,\r
-       institution varchar (255) NULL ,\r
-       address varchar (255) NULL ,\r
-       create_time TIMESTAMP DEFAULT NOW() NULL ,\r
-       last_updated_time TIMESTAMP NULL \r
-)\r
-;\r
-\r
-CREATE TABLE TemplateType (\r
-       temp_type_id smallint NOT NULL ,\r
-       name varchar (64) NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE UniGty (\r
-       unigty_id int NOT NULL ,\r
-       gty_str varchar (255) NULL ,\r
-       allele_id_1 int NOT NULL ,\r
-       allele_id_2 int NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE UniVariAllele (\r
-       univar_id int NOT NULL ,\r
-       allele_id int NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE UniVariation (\r
-       univar_id int NOT NULL ,\r
-       var_str varchar (900) NULL ,\r
-       allele_cnt smallint NOT NULL ,\r
-       subsnp_class smallint NOT NULL ,\r
-       iupack_code char (1) NOT NULL ,\r
-       top_or_bot_strand char (1) NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL ,\r
-       last_updated_time TIMESTAMP NOT NULL ,\r
-       src_code smallint NULL ,\r
-       rev_univar_id int NULL \r
-)\r
-;\r
-\r
-CREATE TABLE UniVariationSrcCode (\r
-       code smallint NOT NULL ,\r
-       abbrev varchar (20) NOT NULL ,\r
-       descrip varchar (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE VariAllele (\r
-       var_id int NOT NULL ,\r
-       allele_id int NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE db_ftp_table_list (\r
-       table_name varchar (32) NOT NULL ,\r
-       db_str varchar (64) NOT NULL ,\r
-       create_time TIMESTAMP DEFAULT NOW() NULL \r
-)\r
-;\r
-\r
-CREATE TABLE db_map_table_name (\r
-       table_name varchar (32) NOT NULL ,\r
-       to_index bit NULL ,\r
-       isCurrent char (1) NULL ,\r
-       inNonHuman char (1) DEFAULT 'N' NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_Allele_rev (\r
-       allele_id int NOT NULL ,\r
-       rev_flag smallint NOT NULL ,\r
-       fwd_allele_id int NOT NULL ,\r
-       fwd_allele varchar (255) NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_Motif_rev (\r
-       motif_id int NOT NULL ,\r
-       rev_flag smallint NOT NULL ,\r
-       fwd_motif varchar (253) NULL ,\r
-       fwd_motif_id int NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_UniGty_allele (\r
-       unigty_id int NOT NULL ,\r
-       chr_num smallint NOT NULL ,\r
-       allele_id int NOT NULL ,\r
-       create_time TIMESTAMP NOT NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_UniGty_rev (\r
-       unigty_id int NOT NULL ,\r
-       rev_flag smallint NOT NULL ,\r
-       fwd_unigty_id int NOT NULL ,\r
-       fwd_gty_str varchar (255) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_UniVariation_rev (\r
-       univar_id int NOT NULL ,\r
-       rev_flag smallint NOT NULL ,\r
-       fwd_univar_id int NULL ,\r
-       fwd_univar_str varchar (900) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_baseFlip (\r
-       base char (1) NULL ,\r
-       rev_flag smallint NULL ,\r
-       fwd_base char (1) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_gty2unigty_trueSNP (\r
-       gty_id int NOT NULL ,\r
-       rev_flag bit NOT NULL ,\r
-       unigty_id int NULL ,\r
-       obs varchar (512) NOT NULL ,\r
-       gty_str varchar (255) NULL \r
-)\r
-;\r
-\r
-CREATE TABLE dn_summary (\r
-       tax_id int NOT NULL ,\r
-       build_id int NOT NULL ,\r
-       type varchar (20) NOT NULL ,\r
-       cnt int NOT NULL ,\r
-       create_time TIMESTAMP DEFAULT NOW() NOT NULL ,\r
-       last_updated_time TIMESTAMP DEFAULT NOW() NOT NULL \r
-)\r
-;\r
-\r
+CREATE TABLE Allele
+(
+allele_id int NOT NULL ,
+allele varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+rev_allele_id int NULL ,
+src varchar(10) NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE AlleleFlagCode
+(
+code smallint NOT NULL ,
+abbrev varchar(12) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE AlleleMotif
+(
+allele_id int NOT NULL ,
+motif_order int NOT NULL ,
+motif_id int NOT NULL ,
+repeat_cnt real NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE AllocIds
+(
+name varchar(30) NOT NULL ,
+id int NOT NULL ,
+cycle int NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL ,
+comment varchar(255) NULL
+);
+CREATE TABLE Author
+(
+pub_id int NOT NULL ,
+position smallint NOT NULL ,
+author varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE Batch_tax_id
+(
+batch_id int NOT NULL ,
+tax_id int NOT NULL ,
+update_time TIMESTAMP NOT NULL
+);
+CREATE TABLE ChiSqPValueLookUp
+(
+df smallint NOT NULL ,
+chisq_from float NOT NULL ,
+chisq_to float NOT NULL ,
+pvalue_upper_bound float NOT NULL
+);
+CREATE TABLE CpGCode
+(
+code smallint NOT NULL ,
+abbrev varchar(12) NOT NULL ,
+descrip varchar(255) NOT NULL
+);
+CREATE TABLE GenBankDivisionCode
+(
+code varchar(6) NOT NULL ,
+abbrev varchar(40) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+display_order smallint NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE GenderCode
+(
+code char(1) NOT NULL ,
+gender varchar(6) NOT NULL
+);
+CREATE TABLE GenomeBuildInfo
+(
+snp_build_id int NOT NULL ,
+tax_id int NOT NULL ,
+database_name varchar(32) NOT NULL ,
+ncbi_build_id int NOT NULL ,
+ncbi_build_ver smallint NOT NULL ,
+insert_time TIMESTAMP NOT NULL ,
+is_major smallint NOT NULL ,
+ncbi_genome_tax_id int NOT NULL ,
+ref_assembly varchar(32) NULL ,
+annot_set_acc varchar(32) NULL ,
+annot_set_ver smallint NULL
+);
+CREATE TABLE GtyAllele
+(
+gty_id int NOT NULL ,
+rev_flag bit NOT NULL ,
+chr_num smallint NOT NULL ,
+fwd_allele_id int NOT NULL ,
+unigty_id int NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE IUPACna
+(
+allele varchar(1) NOT NULL ,
+meaning varchar(10) NOT NULL ,
+bitcode varchar(4) NOT NULL ,
+value smallint NOT NULL ,
+rev_base char(1) NULL
+);
+CREATE TABLE LoadHistory
+(
+build_id int NOT NULL ,
+loaddate TIMESTAMP NOT NULL ,
+status char(30) NOT NULL ,
+comments varchar(255) NULL ,
+script varchar(255) NULL ,
+ftp_done_date TIMESTAMP NULL ,
+entrez_done_date TIMESTAMP NULL ,
+blastdb_done_date TIMESTAMP NULL ,
+web_date TIMESTAMP NULL
+);
+CREATE TABLE LocTypeCode
+(
+code smallint NOT NULL ,
+abbrev varchar(12) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE MapLinkCode
+(
+which_code varchar(20) NOT NULL ,
+code smallint NOT NULL ,
+abbr varchar(10) NULL ,
+note varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE Method
+(
+method_id int NOT NULL ,
+handle varchar(20) NOT NULL ,
+loc_method_id varchar(64) NOT NULL ,
+loc_method_id_upp varchar(64) NOT NULL ,
+method_class smallint NULL ,
+template_type smallint NULL ,
+seq_both_strands varchar(3) NULL ,
+mult_pcr_amplification varchar(3) NULL ,
+mult_clones_tested varchar(3) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE MethodClass
+(
+meth_class_id smallint NOT NULL ,
+name varchar(64) NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+validation_status smallint NOT NULL
+);
+CREATE TABLE MethodLine
+(
+method_id int NOT NULL ,
+line_num smallint NOT NULL ,
+line varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE Moltype
+(
+code smallint NOT NULL ,
+moltype varchar(10) NOT NULL ,
+descrip varchar(255) NOT NULL
+);
+CREATE TABLE Motif
+(
+motif_id int NOT NULL ,
+motif varchar(253) NOT NULL ,
+rev_motif_id int NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE ObsGenotype
+(
+gty_id int NOT NULL ,
+obs varchar(512) NOT NULL ,
+obs_upp_fix varchar(512) NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE ObsVariation
+(
+var_id int NOT NULL ,
+pattern varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NULL ,
+univar_id int NULL ,
+var_flag smallint NULL
+);
+CREATE TABLE OrgDbStatus
+(
+database_name varchar(32) NOT NULL ,
+SNP_cnt int NULL ,
+SubSNP_cnt int NULL ,
+cluster_cnt int NULL ,
+unmapped_rs_cnt int NULL ,
+SubInd_cnt int NULL ,
+ind_cnt int NULL ,
+SubInd_ss_cnt int NULL ,
+SubPop_cnt int NULL ,
+pop_cnt int NULL ,
+SubPop_ss_cnt int NULL ,
+GtyFreqBySsPop_ss_cnt int NULL ,
+AlleleFreqBySsPop_ss_cnt int NULL ,
+SNPGtyFreq_rs_cnt int NULL ,
+SNPAlleleFreq_rs_cnt int NULL ,
+snp_build_max int NULL ,
+genome_build_max varchar(8) NULL ,
+map_time TIMESTAMP NULL ,
+cluster_time_max TIMESTAMP NULL ,
+create_time TIMESTAMP NULL ,
+last_SNPBatch_time TIMESTAMP NULL ,
+last_POPBatch_time TIMESTAMP NULL ,
+last_INDBatch_time TIMESTAMP NULL ,
+rsMax int NULL ,
+rsMissenseMax int NULL ,
+copy2FTP_time TIMESTAMP NULL
+);
+CREATE TABLE OrganismTax
+(
+organism varchar(128) NOT NULL ,
+tax_id int NOT NULL ,
+common_name varchar(32) NULL ,
+gpipe_abbr varchar(7) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+comment varchar(255) NULL ,
+division_cd varchar(6) NULL ,
+database_name varchar(32) NOT NULL ,
+short_common_name varchar(32) NOT NULL ,
+tax_id_rank varchar(5) NOT NULL ,
+species_tax_id int NOT NULL ,
+no_freq_summary bit NULL ,
+entrez_index smallint NULL ,
+pub_genome_build decimal NULL
+);
+CREATE TABLE PopClass
+(
+pop_id int NOT NULL ,
+pop_class_id int NOT NULL ,
+snp_count int NULL
+);
+CREATE TABLE PopClassCode
+(
+pop_class_id int NOT NULL ,
+pop_class char(50) NOT NULL ,
+pop_class_text char(255) NOT NULL
+);
+CREATE TABLE Publication
+(
+pub_id int NOT NULL ,
+pmid int NULL ,
+handle varchar(20) NOT NULL ,
+meduid int NULL ,
+title varchar(235) NOT NULL ,
+journal varchar(255) NULL ,
+vol varchar(255) NULL ,
+suppl varchar(128) NULL ,
+issue varchar(128) NULL ,
+i_suppl varchar(128) NULL ,
+pages varchar(255) NULL ,
+year smallint NOT NULL ,
+status smallint NOT NULL ,
+blobflag smallint NULL ,
+last_updated TIMESTAMP NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE SNPGlossary
+(
+term varchar(256) NOT NULL ,
+description varchar(4000) NULL ,
+last_updated TIMESTAMP NULL ,
+used_in varchar(32) NULL
+);
+CREATE TABLE SNP_tax_id
+(
+snp_id int NOT NULL ,
+tax_id int NULL ,
+update_time TIMESTAMP NULL ,
+status char(1) NULL
+);
+CREATE TABLE SnpChrCode
+(
+code varchar(8) NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+sort_order smallint NULL ,
+db_name varchar(32) NULL ,
+NC_acc varchar(16) NULL
+);
+CREATE TABLE SnpClassCode
+(
+code smallint NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+display_str varchar(255) NULL
+);
+CREATE TABLE SnpFunctionCode
+(
+code smallint NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+top_level_class char(5) NOT NULL ,
+is_coding smallint NOT NULL ,
+is_exon bit NULL ,
+var_prop_loc_code int NULL ,
+var_prop_effect_code int NULL
+);
+CREATE TABLE SnpValidationCode
+(
+code smallint NOT NULL ,
+abbrev varchar(64) NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE StrandCode
+(
+code smallint NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+rs_to_ss_orien bit NOT NULL ,
+descrip varchar(255) NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE SubSNPDelComm
+(
+comment_id smallint NOT NULL ,
+comment varchar(255) NOT NULL ,
+create_time TIMESTAMP NULL
+);
+CREATE TABLE SubSNPSeqTypeCode
+(
+code smallint NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+descrip varchar(255) NOT NULL
+);
+CREATE TABLE Submitter
+(
+handle varchar(20) NOT NULL ,
+name varchar(255) NOT NULL ,
+fax varchar(255) NULL ,
+phone varchar(255) NULL ,
+email varchar(255) NULL ,
+lab varchar(255) NULL ,
+institution varchar(255) NULL ,
+address varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_updated_time TIMESTAMP NULL
+);
+CREATE TABLE TemplateType
+(
+temp_type_id smallint NOT NULL ,
+name varchar(64) NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);
+CREATE TABLE UniGty
+(
+unigty_id int NOT NULL ,
+gty_str varchar(255) NULL ,
+allele_id_1 int NOT NULL ,
+allele_id_2 int NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE UniVariAllele
+(
+univar_id int NOT NULL ,
+allele_id int NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE UniVariation
+(
+univar_id int NOT NULL ,
+var_str varchar(900) NULL ,
+allele_cnt smallint NOT NULL ,
+subsnp_class smallint NOT NULL ,
+iupack_code char(1) NOT NULL ,
+top_or_bot_strand char(1) NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL ,
+src_code smallint NULL ,
+rev_univar_id int NULL
+);
+CREATE TABLE UniVariationSrcCode
+(
+code smallint NOT NULL ,
+abbrev varchar(20) NOT NULL ,
+descrip varchar(255) NOT NULL
+);
+CREATE TABLE VariAllele
+(
+var_id int NOT NULL ,
+allele_id int NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE db_ftp_table_list
+(
+table_name varchar(32) NOT NULL ,
+db_str varchar(64) NOT NULL ,
+create_time TIMESTAMP NULL
+);
+CREATE TABLE db_map_table_name
+(
+table_name varchar(32) NOT NULL ,
+to_index bit NULL ,
+isCurrent char(1) NULL ,
+inNonHuman char(1) NOT NULL
+);
+CREATE TABLE dn_Allele_rev
+(
+allele_id int NOT NULL ,
+rev_flag smallint NOT NULL ,
+fwd_allele_id int NOT NULL ,
+fwd_allele varchar(255) NOT NULL
+);
+CREATE TABLE dn_Motif_rev
+(
+motif_id int NOT NULL ,
+rev_flag smallint NOT NULL ,
+fwd_motif varchar(253) NULL ,
+fwd_motif_id int NULL
+);
+CREATE TABLE dn_UniGty_allele
+(
+unigty_id int NOT NULL ,
+chr_num smallint NOT NULL ,
+allele_id int NOT NULL ,
+create_time TIMESTAMP NOT NULL
+);
+CREATE TABLE dn_UniGty_rev
+(
+unigty_id int NOT NULL ,
+rev_flag smallint NOT NULL ,
+fwd_unigty_id int NOT NULL ,
+fwd_gty_str varchar(255) NULL
+);
+CREATE TABLE dn_UniVariation_rev
+(
+univar_id int NOT NULL ,
+rev_flag smallint NOT NULL ,
+fwd_univar_id int NULL ,
+fwd_univar_str varchar(900) NULL
+);
+CREATE TABLE dn_baseFlip
+(
+base char(1) NULL ,
+rev_flag smallint NULL ,
+fwd_base char(1) NULL
+);
+CREATE TABLE dn_gty2unigty_trueSNP
+(
+gty_id int NOT NULL ,
+rev_flag bit NOT NULL ,
+unigty_id int NULL ,
+obs varchar(512) NOT NULL ,
+gty_str varchar(255) NULL
+);
+CREATE TABLE dn_summary
+(
+tax_id int NOT NULL ,
+build_id int NOT NULL ,
+type varchar(20) NOT NULL ,
+cnt int NOT NULL ,
+create_time TIMESTAMP NOT NULL ,
+last_updated_time TIMESTAMP NOT NULL
+);