2014-01-08 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw |
2013-11-19 |
Sarah Westcott | added binary file operations to mothurout class. added... |
blob | commitdiff | raw |
2013-10-18 |
Sarah Westcott | modifications to commands to add headers to list file. |
blob | commitdiff | raw | diff to current |
2013-10-17 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
blob | commitdiff | raw | diff to current |
2013-10-17 |
Sarah Westcott | adding labels to list file. |
blob | commitdiff | raw | diff to current |
2013-10-17 |
Sarah Westcott | added fastq to list.seqs, get.seqs and remove.seqs... |
blob | commitdiff | raw | diff to current |
2013-10-08 |
Sarah Westcott | added otulabels to heatmap.bin. made OTUlabels “smarter... |
blob | commitdiff | raw | diff to current |
2013-09-18 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
blob | commitdiff | raw | diff to current |
2013-09-18 |
Sarah Westcott | added lefse command. added check for hard filter length... |
blob | commitdiff | raw | diff to current |
2013-09-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2013-08-14 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
blob | commitdiff | raw | diff to current |
2013-08-14 |
Sarah Westcott | changed name of get.metacommunity to get.communitytype... |
blob | commitdiff | raw | diff to current |
2013-07-17 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2013-06-24 |
Sarah Westcott | Merge remote-tracking branch 'origin' |
blob | commitdiff | raw | diff to current |
2013-06-24 |
Sarah Westcott | added kruskal.wallis command. added worked on make... |
blob | commitdiff | raw | diff to current |
2013-06-13 |
Sarah Westcott | added make.lefse command. fixed bug in make.contigs... |
blob | commitdiff | raw | diff to current |
2013-05-23 |
Abu Zaher Md. Faridee | Merge branch 'master' into dev-ml |
blob | commitdiff | raw | diff to current |
2013-05-17 |
Sarah Westcott | changed how rarefaction commands find the lci and hci... |
blob | commitdiff | raw | diff to current |
2013-05-17 |
Sarah Westcott | added modify names parameter to set.dir |
blob | commitdiff | raw | diff to current |
2013-04-19 |
SarahsWork | added mothurOutJustToScreen function and changed all... |
blob | commitdiff | raw | diff to current |
2013-04-05 |
SarahsWork | added method parameter to get.oturep. options method... |
blob | commitdiff | raw | diff to current |
2013-03-18 |
SarahsWork | Merge remote-tracking branch 'origin' |
blob | commitdiff | raw | diff to current |
2013-03-18 |
SarahsWork | working on dereplicate=t issue in chimera.slayer and... |
blob | commitdiff | raw | diff to current |
2013-02-07 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2013-02-06 |
Sarah Westcott | added *.count.summary file to count.groups command... |
blob | commitdiff | raw | diff to current |
2013-01-25 |
Sarah Westcott | added primer.design command. fixed bug with linux... |
blob | commitdiff | raw | diff to current |
2013-01-18 |
Sarah Westcott | fixed seq. error align=f issue. added std and ave calcs... |
blob | commitdiff | raw | diff to current |
2012-10-22 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
blob | commitdiff | raw | diff to current |
2012-10-22 |
Sarah Westcott | added sets to amova and homova commands. added oligos... |
blob | commitdiff | raw | diff to current |
2012-10-22 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-10-02 |
Sarah Westcott | added classify.shared command and random forest files... |
blob | commitdiff | raw | diff to current |
2012-09-25 |
Sarah Westcott | added count file to get.oturep, pre.cluster, screen... |
blob | commitdiff | raw | diff to current |
2012-09-11 |
Sarah Westcott | added count file to get.groups and remove.groups. added... |
blob | commitdiff | raw | diff to current |
2012-07-30 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-07-27 |
Sarah Westcott | added sparseDistanceMatrix class. Modified cluster... |
blob | commitdiff | raw | diff to current |
2012-07-03 |
Kathryn Iverson | Merge branch 'master' of https://github.com/mothur... |
blob | commitdiff | raw | diff to current |
2012-06-28 |
Sarah Westcott | added countable class to read and store count file... |
blob | commitdiff | raw | diff to current |
2012-06-26 |
Sarah Westcott | Merge remote-tracking branch 'origin/master' |
blob | commitdiff | raw | diff to current |
2012-06-26 |
Sarah Westcott | made make.table alias to count.seqs command. added... |
blob | commitdiff | raw | diff to current |
2012-06-19 |
Sarah Westcott | added phylip as output file type for commands that... |
blob | commitdiff | raw | diff to current |
2012-06-19 |
Sarah Westcott | added load.logfile command. changed summary.single... |
blob | commitdiff | raw | diff to current |
2012-06-12 |
Sarah Westcott | changed reading of name file to use buffered reads... |
blob | commitdiff | raw | diff to current |
2012-05-31 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-05-29 |
Sarah Westcott | added code to check path for uchime and catchall execut... |
blob | commitdiff | raw | diff to current |
2012-05-14 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-05-10 |
Sarah Westcott | added abundance and sample parameters to get.coremicrob... |
blob | commitdiff | raw | diff to current |
2012-05-09 |
John Westcott | Merge remote-tracking branch 'origin/master' |
blob | commitdiff | raw | diff to current |
2012-05-09 |
John Westcott | added debug flag to mothurOut. added debug parameter... |
blob | commitdiff | raw | diff to current |
2012-05-02 |
Sarah Westcott | Revert to previous commit |
blob | commitdiff | raw | diff to current |
2012-05-02 |
Sarah Westcott | moved mothur's source into a folder to make grabbing... |
blob | commitdiff | raw |
2012-05-01 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-04-20 |
Sarah Westcott | added uchime_src folder. added biom parameter to make... |
blob | commitdiff | raw | diff to current |
2012-04-13 |
Sarah Westcott | added tree reader class to handle reading trees. Rewor... |
blob | commitdiff | raw | diff to current |
2012-04-11 |
Sarah Westcott | fixed bug with windows version of trim.seqs when run... |
blob | commitdiff | raw | diff to current |
2012-04-04 |
Pat Schloss | Merge remote-tracking branch 'mothur/master' |
blob | commitdiff | raw | diff to current |
2012-03-27 |
Sarah Westcott | added pcr.seqs command. fixed bug in rarefacftion.singl... |
blob | commitdiff | raw | diff to current |
2012-02-20 |
Sarah Westcott | removed unused copy constructors and comments within... |
blob | commitdiff | raw | diff to current |
2012-01-04 |
westcott | 1.23.0 |
blob | commitdiff | raw | diff to current |
2011-12-23 |
westcott | changed rarefaction.single output |
blob | commitdiff | raw | diff to current |
2011-11-28 |
westcott | added fontsize to heatmap.sim, paralellized chimera... |
blob | commitdiff | raw | diff to current |
2011-11-07 |
westcott | working on chimera.perseus. made removeConfidences... |
blob | commitdiff | raw | diff to current |
2011-09-23 |
westcott | added summary.tax command and fixed bug with root level... |
blob | commitdiff | raw | diff to current |
2011-09-21 |
westcott | finished added bygroup processing of chimeras in chimer... |
blob | commitdiff | raw | diff to current |
2011-09-13 |
westcott | working on windows paralellization, added trimOligos... |
blob | commitdiff | raw | diff to current |
2011-08-22 |
westcott | added multiple processors option for Windows users... |
blob | commitdiff | raw | diff to current |
2011-07-18 |
westcott | changed normalize.shared and sub.sample commands to... |
blob | commitdiff | raw | diff to current |
2011-07-15 |
westcott | rewrote metastats command in c++, added mothurRemove... |
blob | commitdiff | raw | diff to current |
2011-07-06 |
westcott | added save parameter to align.seqs, chimera commands... |
blob | commitdiff | raw | diff to current |
2011-06-28 |
westcott | indicator command |
blob | commitdiff | raw | diff to current |
2011-06-01 |
westcott | added headers to shared and relabund files |
blob | commitdiff | raw | diff to current |
2011-05-24 |
westcott | paralellized seq.error and dist.shared added some error... |
blob | commitdiff | raw | diff to current |
2011-05-18 |
westcott | fixed bug with trim.seqs allfiles=t |
blob | commitdiff | raw | diff to current |
2011-05-16 |
westcott | added chimera.uchime |
blob | commitdiff | raw | diff to current |
2011-04-26 |
westcott | added current as option is lists of file names, process... |
blob | commitdiff | raw | diff to current |
2011-04-18 |
westcott | modified chimera.slayer template=self |
blob | commitdiff | raw | diff to current |
2011-04-15 |
westcott | 1.18.1 |
blob | commitdiff | raw | diff to current |
2011-04-11 |
westcott | fixed sub.sample groups bug |
blob | commitdiff | raw | diff to current |
2011-04-08 |
westcott | fixing bugs while testing |
blob | commitdiff | raw | diff to current |
2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata... |
blob | commitdiff | raw | diff to current |
2011-03-16 |
westcott | added set.current and get.current commands and modified... |
blob | commitdiff | raw | diff to current |
2011-03-11 |
westcott | added namefile to align.check and added seqs from namef... |
blob | commitdiff | raw | diff to current |
2010-12-06 |
westcott | modified trim.seqs to speed up the append with multiple... |
blob | commitdiff | raw | diff to current |
2010-10-29 |
westcott | added cluster.classic command |
blob | commitdiff | raw | diff to current |
2010-10-15 |
westcott | added pipeline commands which involved change to comman... |
blob | commitdiff | raw | diff to current |
2010-08-24 |
westcott | moved utilities out of mothur.h and into mothurOut... |
blob | commitdiff | raw | diff to current |
2010-08-06 |
westcott | added versioning info to all shortcut files mothur... |
blob | commitdiff | raw | diff to current |
2010-07-19 |
westcott | added compile time default path |
blob | commitdiff | raw | diff to current |
2010-06-30 |
westcott | modified trim.seqs to split by primer name if primer... |
blob | commitdiff | raw | diff to current |
2010-04-14 |
westcott | some changes while testing 1.9 |
blob | commitdiff | raw | diff to current |
2010-03-11 |
westcott | testing mpi |
blob | commitdiff | raw | diff to current |
2010-03-03 |
westcott | added checks for ^C to quit command instead of program |
blob | commitdiff | raw | diff to current |
2010-03-01 |
westcott | adding mothurout.h and .cpp to repo |
blob | commitdiff | raw | diff to current |
|