git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	Sarah Westcott <mothur.westcott@gmail.com>
	Tue, 27 Mar 2012 16:35:08 +0000 (12:35 -0400)
committer	Sarah Westcott <mothur.westcott@gmail.com>
	Tue, 27 Mar 2012 16:35:08 +0000 (12:35 -0400)
commit	57b3c96832667c1b70d4d526331f52e3d49e8237
tree	1aa00f9918ac2d4e0476d38c3d6f04a13a44670c	tree \| snapshot
parent	17fe3208075e55133789b247c062e6474f7439b0	commit \| diff

added pcr.seqs command. fixed bug in rarefacftion.single that caused parsing error if group names contained '_' in shared file. metastats - modified to more closely follow results from metastats website. trim.flows and trim.seqs allow for characters other than ATGC in reverse primers. removed name file warning when mother calls command internally.

34 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
chimeraperseuscommand.cpp		diff \| blob \| history
chimeraslayercommand.cpp		diff \| blob \| history
chimerauchimecommand.cpp		diff \| blob \| history
classifyseqscommand.cpp		diff \| blob \| history
commandfactory.cpp		diff \| blob \| history
deconvolutecommand.cpp		diff \| blob \| history
filterseqscommand.cpp		diff \| blob \| history
fisher2.c	[deleted file]	blob \| history
fisher2.h	[deleted file]	blob \| history
makefile		diff \| blob \| history
metastats.h	[deleted file]	blob \| history
metastats2.c	[deleted file]	blob \| history
metastatscommand.cpp		diff \| blob \| history
mothurmetastats.cpp		diff \| blob \| history
mothurmetastats.h		diff \| blob \| history
mothurout.h		diff \| blob \| history
optionparser.cpp		diff \| blob \| history
pcrseqscommand.h	[new file with mode: 0644]	blob
phylotypecommand.cpp		diff \| blob \| history
prcseqscommand.cpp	[new file with mode: 0644]	blob
preclustercommand.cpp		diff \| blob \| history
rarefactcommand.cpp		diff \| blob \| history
screenseqscommand.cpp		diff \| blob \| history
screenseqscommand.h		diff \| blob \| history
sharedcommand.cpp		diff \| blob \| history
shhhercommand.cpp		diff \| blob \| history
shhhseqscommand.cpp		diff \| blob \| history
subsamplecommand.cpp		diff \| blob \| history
trialswap2.h		diff \| blob \| history
trimflowscommand.cpp		diff \| blob \| history
trimflowscommand.h		diff \| blob \| history
trimseqscommand.cpp		diff \| blob \| history
trimseqscommand.h		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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