git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	Sarah Westcott <mothur.westcott@gmail.com>
	Fri, 20 Apr 2012 16:52:21 +0000 (12:52 -0400)
committer	Sarah Westcott <mothur.westcott@gmail.com>
	Fri, 20 Apr 2012 16:52:21 +0000 (12:52 -0400)
commit	7dab6ac3ae5a5f1ce37dca8cfacaa719881fd5b2
tree	c09e631f027316369e489525aa23d146379bdcbf	tree \| snapshot
parent	aa23898d895a8c04cc4582a8809343df0aef6622	commit \| diff

added uchime_src folder. added biom parameter to make.shared. added biom as a current file type.

63 files changed:

commandoptionparser.cpp		diff \| blob \| history
getcurrentcommand.cpp		diff \| blob \| history
makebiomcommand.cpp		diff \| blob \| history
makebiomcommand.h		diff \| blob \| history
mothurout.cpp		diff \| blob \| history
mothurout.h		diff \| blob \| history
optionparser.cpp		diff \| blob \| history
setcurrentcommand.cpp		diff \| blob \| history
setcurrentcommand.h		diff \| blob \| history
sharedcommand.cpp		diff \| blob \| history
sharedcommand.h		diff \| blob \| history
uchime_src/addtargets2.cpp	[new file with mode: 0644]	blob
uchime_src/alignchime.cpp	[new file with mode: 0644]	blob
uchime_src/alignchimel.cpp	[new file with mode: 0644]	blob
uchime_src/allocs.h	[new file with mode: 0644]	blob
uchime_src/alnheuristics.h	[new file with mode: 0644]	blob
uchime_src/alnparams.cpp	[new file with mode: 0644]	blob
uchime_src/alnparams.h	[new file with mode: 0644]	blob
uchime_src/alpha.cpp	[new file with mode: 0644]	blob
uchime_src/alpha.h	[new file with mode: 0644]	blob
uchime_src/alpha2.cpp	[new file with mode: 0644]	blob
uchime_src/chainer.h	[new file with mode: 0644]	blob
uchime_src/chime.h	[new file with mode: 0644]	blob
uchime_src/counters.h	[new file with mode: 0644]	blob
uchime_src/diagbox.h	[new file with mode: 0644]	blob
uchime_src/dp.h	[new file with mode: 0644]	blob
uchime_src/evalue.h	[new file with mode: 0644]	blob
uchime_src/fractid.cpp	[new file with mode: 0644]	blob
uchime_src/getparents.cpp	[new file with mode: 0644]	blob
uchime_src/globalalign2.cpp	[new file with mode: 0644]	blob
uchime_src/help.h	[new file with mode: 0644]	blob
uchime_src/hsp.h	[new file with mode: 0644]	blob
uchime_src/hspfinder.h	[new file with mode: 0644]	blob
uchime_src/make3way.cpp	[new file with mode: 0644]	blob
uchime_src/mk	[new file with mode: 0755]	blob
uchime_src/mx.cpp	[new file with mode: 0644]	blob
uchime_src/mx.h	[new file with mode: 0644]	blob
uchime_src/myopts.h	[new file with mode: 0644]	blob
uchime_src/myutils.cpp	[new file with mode: 0644]	blob
uchime_src/myutils.h	[new file with mode: 0644]	blob
uchime_src/orf.h	[new file with mode: 0644]	blob
uchime_src/out.h	[new file with mode: 0644]	blob
uchime_src/path.cpp	[new file with mode: 0644]	blob
uchime_src/path.h	[new file with mode: 0644]	blob
uchime_src/searchchime.cpp	[new file with mode: 0644]	blob
uchime_src/seq.h	[new file with mode: 0644]	blob
uchime_src/seqdb.cpp	[new file with mode: 0644]	blob
uchime_src/seqdb.h	[new file with mode: 0644]	blob
uchime_src/setnucmx.cpp	[new file with mode: 0644]	blob
uchime_src/sfasta.cpp	[new file with mode: 0644]	blob
uchime_src/sfasta.h	[new file with mode: 0644]	blob
uchime_src/svnmods.h	[new file with mode: 0644]	blob
uchime_src/svnversion.h	[new file with mode: 0644]	blob
uchime_src/timers.h	[new file with mode: 0644]	blob
uchime_src/timing.h	[new file with mode: 0644]	blob
uchime_src/tracebackbit.cpp	[new file with mode: 0644]	blob
uchime_src/uc.h	[new file with mode: 0644]	blob
uchime_src/uchime_main.cpp	[new file with mode: 0644]	blob
uchime_src/ultra.h	[new file with mode: 0644]	blob
uchime_src/usort.cpp	[new file with mode: 0644]	blob
uchime_src/viterbifast.cpp	[new file with mode: 0644]	blob
uchime_src/windex.h	[new file with mode: 0644]	blob
uchime_src/writechhit.cpp	[new file with mode: 0644]	blob

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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