git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	westcott <westcott>
	Tue, 13 Sep 2011 10:08:39 +0000 (10:08 +0000)
committer	westcott <westcott>
	Tue, 13 Sep 2011 10:08:39 +0000 (10:08 +0000)
commit	ae57e166b2ed7b475ec3f466106bd76fabadd063
tree	0cac4b031fe237ec5ed7bbe0e826a28cd1d0a014	tree \| snapshot
parent	55386dddad84cc1140d736cabaf4dd0ae16f2e01	commit \| diff

working on windows paralellization, added trimOligos class to be used by trim.flows and trim.seqs commands. Added sequenceParser class to divide fasta and names files by group. Added group and bygroup options to pre.cluster to allow you to pre.cluster within each group.

63 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
aligncommand.cpp		diff \| blob \| history
aligncommand.h		diff \| blob \| history
alignmentdb.cpp		diff \| blob \| history
amovacommand.cpp		diff \| blob \| history
anosimcommand.cpp		diff \| blob \| history
bayesian.cpp		diff \| blob \| history
bellerophon.cpp		diff \| blob \| history
bellerophon.h		diff \| blob \| history
chimera.cpp		diff \| blob \| history
chimera.h		diff \| blob \| history
chimeraccodecommand.cpp		diff \| blob \| history
chimeraccodecommand.h		diff \| blob \| history
chimeracheckcommand.cpp		diff \| blob \| history
chimeracheckcommand.h		diff \| blob \| history
chimerapintailcommand.cpp		diff \| blob \| history
chimerapintailcommand.h		diff \| blob \| history
chimeraslayercommand.cpp		diff \| blob \| history
chimeraslayercommand.h		diff \| blob \| history
classify.cpp		diff \| blob \| history
classifyseqscommand.cpp		diff \| blob \| history
classifyseqscommand.h		diff \| blob \| history
clustercommand.cpp		diff \| blob \| history
clusterfragmentscommand.cpp		diff \| blob \| history
deconvolutecommand.cpp		diff \| blob \| history
distancecommand.cpp		diff \| blob \| history
distancecommand.h		diff \| blob \| history
filterseqscommand.cpp		diff \| blob \| history
filterseqscommand.h		diff \| blob \| history
flowdata.cpp		diff \| blob \| history
homovacommand.cpp		diff \| blob \| history
makefile		diff \| blob \| history
mothurout.cpp		diff \| blob \| history
mothurout.h		diff \| blob \| history
pairwiseseqscommand.cpp		diff \| blob \| history
pairwiseseqscommand.h		diff \| blob \| history
phylotree.cpp		diff \| blob \| history
preclustercommand.cpp		diff \| blob \| history
preclustercommand.h		diff \| blob \| history
rarefactcommand.cpp		diff \| blob \| history
rarefactcommand.h		diff \| blob \| history
screenseqscommand.cpp		diff \| blob \| history
screenseqscommand.h		diff \| blob \| history
seqerrorcommand.cpp		diff \| blob \| history
seqerrorcommand.h		diff \| blob \| history
seqsummarycommand.cpp		diff \| blob \| history
seqsummarycommand.h		diff \| blob \| history
sequenceparser.cpp	[new file with mode: 0644]	blob
sequenceparser.h	[new file with mode: 0644]	blob
sffinfocommand.cpp		diff \| blob \| history
sffinfocommand.h		diff \| blob \| history
sharedrabundvector.cpp		diff \| blob \| history
shhhercommand.cpp		diff \| blob \| history
shhhercommand.h		diff \| blob \| history
simpson.cpp		diff \| blob \| history
subsamplecommand.cpp		diff \| blob \| history
systemcommand.cpp		diff \| blob \| history
trimflowscommand.cpp		diff \| blob \| history
trimflowscommand.h		diff \| blob \| history
trimoligos.cpp	[new file with mode: 0644]	blob
trimoligos.h	[new file with mode: 0644]	blob
trimseqscommand.cpp		diff \| blob \| history
trimseqscommand.h		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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