mothur.git
2014-04-22 Kathryn Iversonupdate .gitignore master
2014-04-09 Sarah Westcottpre.cluster unable to spawn necessary processes adjustment.
2014-04-09 Sarah Westcottadded oligos class. added check orient parameter to...
2014-04-02 Sarah Westcottworking on sra and get.mimarkspackage commands. added...
2014-04-01 Sarah Westcottworking of get.mimarkspackage and sra command
2014-03-25 Sarah Westcottchanged int to pid_t type in fork(). roughed in get...
2014-03-25 Sarah Westcottadded mothurgetpid function. fixed bug with align.seqs...
2014-03-06 Sarah Westcottadded shared file to make.table
2014-03-05 Sarah Westcottadded shannonrange calc.
2014-02-28 Sarah Westcottpcr.seqs bug fix. working on shannon range calc
2014-02-25 Sarah Westcottfixed bug in make.biom with picrust that didn’t allow...
2014-02-12 Sarah Westcottfixes while building
2014-02-11 Sarah Westcottfixing help
2014-02-10 Sarah Westcottfixes while testing 1.33.0
2014-02-04 Sarah Westcottadded relabund parameter to classify.seqs and summary...
2014-02-03 Sarah Westcottadded mergesfffiles command. added current directories...
2014-01-31 Sarah Westcottfixed bug in pam
2014-01-29 Sarah Westcottworking on get.communitytype command
2014-01-21 Sarah Westcottadded rjsd calculator. improved work balance load...
2014-01-21 Sarah WestcottMerge remote-tracking branch 'origin/master'
2014-01-21 Sarah Westcottworking on pam
2014-01-21 Sarah WestcottTest new machine.
2014-01-09 Pat Schlossconverted jsd calculation to be based on relative abundance
2014-01-09 Pat SchlossMerge remote-tracking branch 'mothur/master'
2014-01-09 Sarah Westcottadded Jensen-Shannon calc. working on get.communitytype...
2014-01-08 Pat SchlossMerge remote-tracking branch 'mothur/master'
2014-01-08 Pat Schlosssome changes on qFinderDMM
2013-12-03 Sarah Westcottadded oligos, group, pdiffs, bdiffs, ldiffs, sdiffs...
2013-11-19 Sarah Westcotttypo
2013-11-19 Sarah Westcottadded binary file operations to mothurout class. added...
2013-10-22 Sarah Westcottadded picrust and ref taxonomy parameters to make.biom
2013-10-18 Sarah Westcottmodifications to commands to add headers to list file.
2013-10-17 Sarah WestcottMerge remote-tracking branch 'origin/master'
2013-10-17 Sarah Westcottadding labels to list file.
2013-10-17 Sarah Westcottadded fastq to list.seqs, get.seqs and remove.seqs...
2013-10-08 Sarah Westcottadded otulabels to heatmap.bin. made OTUlabels “smarter...
2013-10-02 Sarah Westcottchanges while testing
2013-09-18 Sarah WestcottMerge remote-tracking branch 'origin'
2013-09-18 Sarah Westcottadded lefse command. added check for hard filter length...
2013-09-16 Kathryn Iversonchanging command name classify.shared to classifyrf...
2013-09-11 kdiversonadding misclassification output file
2013-09-11 kdiversonadding misclassification output file
2013-09-11 kdiversonadding misclassification output file
2013-09-11 kdiversonadding misclassification output file
2013-09-11 kdiversonadding pretty confusion matrix
2013-09-11 kdiversonadding pretty confusion matrix
2013-09-11 kdiversonadding code for confusion matrix
2013-09-11 kdiversonadding code for confusion matrix
2013-09-11 kdiversonadding code for confusion matrix
2013-09-10 kdiversonchanged random forest output filename
2013-09-04 Pat SchlossMerge remote-tracking branch 'mothur/master'
2013-09-04 Pat Schlossrandom stuff
2013-08-14 Sarah WestcottMerge remote-tracking branch 'origin'
2013-08-14 Sarah Westcottchanged name of get.metacommunity to get.communitytype...
2013-08-02 Sarah WestcottMerge remote-tracking branch 'origin'
2013-08-02 Sarah WestcottQualscore gobbles
2013-07-19 Pat SchlossUpdate mgcluster to use dist=1 for missing distances...
2013-07-18 Sarah Westcottadded adjust parameter to mgcluster. fixed bug in class...
2013-07-17 Pat Schlossasdf
2013-07-17 Pat SchlossMerge remote-tracking branch 'mothur/master'
2013-07-17 Pat Schlossfixed problem where order=B was not checking for the...
2013-06-24 Sarah WestcottMerge remote-tracking branch 'origin'
2013-06-24 Sarah Westcottadded kruskal.wallis command. added worked on make...
2013-06-24 John Westcotttest change
2013-06-13 Sarah Westcottmgcluster with count file needed to create a nameMap...
2013-06-13 Sarah Westcottadded make.lefse command. fixed bug in make.contigs...
2013-05-29 Sarah Westcottget.seqs not renaming sequences correctly for dups...
2013-05-29 Sarah Westcottadded rename.seqs command.
2013-05-28 Sarah Westcottcase sensitive include statement caused issues for...
2013-05-28 Sarah Westcottcitation changes for 1.31.0
2013-05-24 Sarah WestcottMerge remote-tracking branch 'origin'
2013-05-24 Sarah Westcottadded debugging to otu.association
2013-05-23 Abu Zaher Md... re-enabling the destructor to enable deletion of dynami...
2013-05-23 Abu Zaher Md... Merge branch 'master' into dev-ml
2013-05-23 Sarah Westcottchanges while testing
2013-05-17 Sarah Westcottchanged how rarefaction commands find the lci and hci...
2013-05-17 Sarah Westcottadded modify names parameter to set.dir
2013-05-16 Kathryn Iversonupdated default parameters. These are giving better...
2013-05-16 Kathryn Iversoncleaned up what is printed to screen
2013-05-15 Sarah Westcottadded make.lookup command.
2013-05-14 Sarah Westcottadded count file to create.database command. corrected...
2013-05-13 Sarah Westcottcluster.split was not sorting the list file in order...
2013-05-13 Sarah Westcottadded sparcc command. fixed bug in remove.groups that...
2013-05-06 Sarah Westcottparalellized parsimony, unifrac.unweighted, phylo.diver...
2013-05-02 Abu Zaher Md... a lot of new input parameters in rf module, implemented...
2013-04-29 SarahsWorkadded square format for phylipfile. made command work...
2013-04-29 SarahsWorkadded shared, constaxonomy and label parameter to get...
2013-04-26 SarahsWorkadded adjustDots function to pcr.seqs, keeps sequences...
2013-04-22 SarahsWorkparalellized make.table / count.seqs command. added...
2013-04-22 SarahsWorkadded flag to count table read so that commands that...
2013-04-19 SarahsWorkadded mothurOutJustToScreen function and changed all...
2013-04-19 SarahsWorkparalellized unifrac.weighted for windows. added get...
2013-04-12 SarahsWorkadded get.metacommunity command.
2013-04-08 SarahsWorkadded rarepercent and keepties parameters to the filter...
2013-04-05 SarahsWorkadded method parameter to get.oturep. options method...
2013-04-05 SarahsWorksffinfo bug with flow grams right index when clipQualRi...
2013-04-03 SarahsWorkadded name, group and count files to chop.seqs. added...
2013-04-03 SarahsWorkadded count file to get.sabund and get.rabund commands...
2013-04-01 SarahsWorkadded end of file character to some type type reads...
2013-03-25 SarahsWorkremoved make count from make.contigs
next