]> git.donarmstrong.com Git - mothur.git/commit
Revert to previous commit
authorSarah Westcott <mothur.westcott@gmail.com>
Wed, 2 May 2012 16:03:00 +0000 (12:03 -0400)
committerSarah Westcott <mothur.westcott@gmail.com>
Wed, 2 May 2012 16:03:00 +0000 (12:03 -0400)
commit0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc
treef57bf8f0978823e9f50500380da84eb16d0cd5ee
parent1b73ff67c83892a025e597dabd9df6fe7b58206a
Revert to previous commit
1301 files changed:
Mothur.xcodeproj/project.pbxproj
ace.cpp [new file with mode: 0644]
ace.h [new file with mode: 0644]
aligncommand.cpp [new file with mode: 0644]
aligncommand.h [new file with mode: 0644]
alignment.cpp [new file with mode: 0644]
alignment.hpp [new file with mode: 0644]
alignmentcell.cpp [new file with mode: 0644]
alignmentcell.hpp [new file with mode: 0644]
alignmentdb.cpp [new file with mode: 0644]
alignmentdb.h [new file with mode: 0644]
amovacommand.cpp [new file with mode: 0644]
amovacommand.h [new file with mode: 0644]
anosimcommand.cpp [new file with mode: 0644]
anosimcommand.h [new file with mode: 0644]
averagelinkage.cpp [new file with mode: 0644]
bayesian.cpp [new file with mode: 0644]
bayesian.h [new file with mode: 0644]
bellerophon.cpp [new file with mode: 0644]
bellerophon.h [new file with mode: 0644]
bergerparker.cpp [new file with mode: 0644]
bergerparker.h [new file with mode: 0644]
binsequencecommand.cpp [new file with mode: 0644]
binsequencecommand.h [new file with mode: 0644]
blastalign.cpp [new file with mode: 0644]
blastalign.hpp [new file with mode: 0644]
blastdb.cpp [new file with mode: 0644]
blastdb.hpp [new file with mode: 0644]
boneh.cpp [new file with mode: 0644]
boneh.h [new file with mode: 0644]
bootstrap.cpp [new file with mode: 0644]
bootstrap.h [new file with mode: 0644]
bsplvb.f [new file with mode: 0644]
bsplvd.f [new file with mode: 0644]
bstick.cpp [new file with mode: 0644]
bstick.h [new file with mode: 0644]
bvalue.f [new file with mode: 0644]
calculator.cpp [new file with mode: 0644]
calculator.h [new file with mode: 0644]
canberra.cpp [new file with mode: 0644]
canberra.h [new file with mode: 0644]
catchallcommand.cpp [new file with mode: 0644]
catchallcommand.h [new file with mode: 0644]
ccode.cpp [new file with mode: 0644]
ccode.h [new file with mode: 0644]
chao1.cpp [new file with mode: 0644]
chao1.h [new file with mode: 0644]
chimera.cpp [new file with mode: 0644]
chimera.h [new file with mode: 0644]
chimerabellerophoncommand.cpp [new file with mode: 0644]
chimerabellerophoncommand.h [new file with mode: 0644]
chimeraccodecommand.cpp [new file with mode: 0644]
chimeraccodecommand.h [new file with mode: 0644]
chimeracheckcommand.cpp [new file with mode: 0644]
chimeracheckcommand.h [new file with mode: 0644]
chimeracheckrdp.cpp [new file with mode: 0644]
chimeracheckrdp.h [new file with mode: 0644]
chimeraperseuscommand.cpp [new file with mode: 0644]
chimeraperseuscommand.h [new file with mode: 0644]
chimerapintailcommand.cpp [new file with mode: 0644]
chimerapintailcommand.h [new file with mode: 0644]
chimerarealigner.cpp [new file with mode: 0644]
chimerarealigner.h [new file with mode: 0644]
chimeraslayer.cpp [new file with mode: 0644]
chimeraslayer.h [new file with mode: 0644]
chimeraslayercommand.cpp [new file with mode: 0644]
chimeraslayercommand.h [new file with mode: 0644]
chimerauchimecommand.cpp [new file with mode: 0644]
chimerauchimecommand.h [new file with mode: 0644]
chopseqscommand.cpp [new file with mode: 0644]
chopseqscommand.h [new file with mode: 0644]
classify.cpp [new file with mode: 0644]
classify.h [new file with mode: 0644]
classifyotucommand.cpp [new file with mode: 0644]
classifyotucommand.h [new file with mode: 0644]
classifyseqscommand.cpp [new file with mode: 0644]
classifyseqscommand.h [new file with mode: 0644]
classifytreecommand.cpp [new file with mode: 0644]
classifytreecommand.h [new file with mode: 0644]
clearcut.cpp [new file with mode: 0644]
clearcut.h [new file with mode: 0644]
clearcutcommand.cpp [new file with mode: 0644]
clearcutcommand.h [new file with mode: 0644]
clearmemorycommand.cpp [new file with mode: 0644]
clearmemorycommand.h [new file with mode: 0644]
cluster.cpp [new file with mode: 0644]
cluster.hpp [new file with mode: 0644]
clusterclassic.cpp [new file with mode: 0644]
clusterclassic.h [new file with mode: 0644]
clustercommand.cpp [new file with mode: 0644]
clustercommand.h [new file with mode: 0644]
clusterdoturcommand.cpp [new file with mode: 0644]
clusterdoturcommand.h [new file with mode: 0644]
clusterfragmentscommand.cpp [new file with mode: 0644]
clusterfragmentscommand.h [new file with mode: 0644]
clustersplitcommand.cpp [new file with mode: 0644]
clustersplitcommand.h [new file with mode: 0644]
cmdargs.cpp [new file with mode: 0644]
cmdargs.h [new file with mode: 0644]
collect.cpp [new file with mode: 0644]
collect.h [new file with mode: 0644]
collectcommand.cpp [new file with mode: 0644]
collectcommand.h [new file with mode: 0644]
collectdisplay.h [new file with mode: 0644]
collectorscurvedata.h [new file with mode: 0644]
collectsharedcommand.cpp [new file with mode: 0644]
collectsharedcommand.h [new file with mode: 0644]
command.hpp [new file with mode: 0644]
commandfactory.cpp [new file with mode: 0644]
commandfactory.hpp [new file with mode: 0644]
commandoptionparser.cpp [new file with mode: 0644]
commandoptionparser.hpp [new file with mode: 0644]
commandparameter.h [new file with mode: 0644]
common.h [new file with mode: 0644]
completelinkage.cpp [new file with mode: 0644]
consensus.cpp [new file with mode: 0644]
consensus.h [new file with mode: 0644]
consensusseqscommand.cpp [new file with mode: 0644]
consensusseqscommand.h [new file with mode: 0644]
cooccurrencecommand.cpp [new file with mode: 0644]
cooccurrencecommand.h [new file with mode: 0644]
corraxescommand.cpp [new file with mode: 0644]
corraxescommand.h [new file with mode: 0644]
countgroupscommand.cpp [new file with mode: 0644]
countgroupscommand.h [new file with mode: 0644]
countseqscommand.cpp [new file with mode: 0644]
countseqscommand.h [new file with mode: 0644]
coverage.cpp [new file with mode: 0644]
coverage.h [new file with mode: 0644]
createdatabasecommand.cpp [new file with mode: 0644]
createdatabasecommand.h [new file with mode: 0644]
currentfile.h [new file with mode: 0644]
database.cpp [new file with mode: 0644]
database.hpp [new file with mode: 0644]
datavector.hpp [new file with mode: 0644]
daxpy.f [new file with mode: 0644]
dayhoff.h [new file with mode: 0644]
ddot.f [new file with mode: 0644]
decalc.cpp [new file with mode: 0644]
decalc.h [new file with mode: 0644]
deconvolutecommand.cpp [new file with mode: 0644]
deconvolutecommand.h [new file with mode: 0644]
degapseqscommand.cpp [new file with mode: 0644]
degapseqscommand.h [new file with mode: 0644]
deuniqueseqscommand.cpp [new file with mode: 0644]
deuniqueseqscommand.h [new file with mode: 0644]
deuniquetreecommand.cpp [new file with mode: 0644]
deuniquetreecommand.h [new file with mode: 0644]
display.h [new file with mode: 0644]
dist.h [new file with mode: 0644]
distancecommand.cpp [new file with mode: 0644]
distancecommand.h [new file with mode: 0644]
distancedb.cpp [new file with mode: 0644]
distancedb.hpp [new file with mode: 0644]
distclearcut.cpp [new file with mode: 0644]
distclearcut.h [new file with mode: 0644]
dlibshuff.cpp [new file with mode: 0644]
dlibshuff.h [new file with mode: 0644]
dmat.cpp [new file with mode: 0644]
dmat.h [new file with mode: 0644]
dpbfa.f [new file with mode: 0644]
dpbsl.f [new file with mode: 0644]
eachgapdist.h [new file with mode: 0644]
eachgapdistignorens.h [new file with mode: 0644]
eachgapignore.h [new file with mode: 0644]
efron.cpp [new file with mode: 0644]
efron.h [new file with mode: 0644]
endiannessmacros.h [new file with mode: 0644]
engine.cpp [new file with mode: 0644]
engine.hpp [new file with mode: 0644]
fasta.cpp [new file with mode: 0644]
fasta.h [new file with mode: 0644]
fastamap.cpp [new file with mode: 0644]
fastamap.h [new file with mode: 0644]
fileoutput.cpp [new file with mode: 0644]
fileoutput.h [new file with mode: 0644]
filters.h [new file with mode: 0644]
filterseqscommand.cpp [new file with mode: 0644]
filterseqscommand.h [new file with mode: 0644]
flowdata.cpp [new file with mode: 0644]
flowdata.h [new file with mode: 0644]
formatcolumn.cpp [new file with mode: 0644]
formatcolumn.h [new file with mode: 0644]
formatmatrix.h [new file with mode: 0644]
formatphylip.cpp [new file with mode: 0644]
formatphylip.h [new file with mode: 0644]
fullmatrix.cpp [new file with mode: 0644]
fullmatrix.h [new file with mode: 0644]
geom.cpp [new file with mode: 0644]
geom.h [new file with mode: 0644]
getcommandinfocommand.cpp [new file with mode: 0644]
getcommandinfocommand.h [new file with mode: 0644]
getcurrentcommand.cpp [new file with mode: 0644]
getcurrentcommand.h [new file with mode: 0644]
getgroupcommand.cpp [new file with mode: 0644]
getgroupcommand.h [new file with mode: 0644]
getgroupscommand.cpp [new file with mode: 0644]
getgroupscommand.h [new file with mode: 0644]
getlabelcommand.cpp [new file with mode: 0644]
getlabelcommand.h [new file with mode: 0644]
getlineagecommand.cpp [new file with mode: 0644]
getlineagecommand.h [new file with mode: 0644]
getlistcountcommand.cpp [new file with mode: 0644]
getlistcountcommand.h [new file with mode: 0644]
getopt_long.cpp [new file with mode: 0644]
getopt_long.h [new file with mode: 0644]
getoturepcommand.cpp [new file with mode: 0644]
getoturepcommand.h [new file with mode: 0644]
getotuscommand.cpp [new file with mode: 0644]
getotuscommand.h [new file with mode: 0644]
getrabundcommand.cpp [new file with mode: 0644]
getrabundcommand.h [new file with mode: 0644]
getrelabundcommand.cpp [new file with mode: 0644]
getrelabundcommand.h [new file with mode: 0644]
getsabundcommand.cpp [new file with mode: 0644]
getsabundcommand.h [new file with mode: 0644]
getseqscommand.cpp [new file with mode: 0644]
getseqscommand.h [new file with mode: 0644]
getsharedotucommand.cpp [new file with mode: 0644]
getsharedotucommand.h [new file with mode: 0644]
goodscoverage.cpp [new file with mode: 0644]
goodscoverage.h [new file with mode: 0644]
gotohoverlap.cpp [new file with mode: 0644]
gotohoverlap.hpp [new file with mode: 0644]
gower.cpp [new file with mode: 0644]
gower.h [new file with mode: 0644]
groupmap.cpp [new file with mode: 0644]
groupmap.h [new file with mode: 0644]
hamming.cpp [new file with mode: 0644]
hamming.h [new file with mode: 0644]
hcluster.cpp [new file with mode: 0644]
hcluster.h [new file with mode: 0644]
hclustercommand.cpp [new file with mode: 0644]
hclustercommand.h [new file with mode: 0644]
heatmap.cpp [new file with mode: 0644]
heatmap.h [new file with mode: 0644]
heatmapcommand.cpp [new file with mode: 0644]
heatmapcommand.h [new file with mode: 0644]
heatmapsim.cpp [new file with mode: 0644]
heatmapsim.h [new file with mode: 0644]
heatmapsimcommand.cpp [new file with mode: 0644]
heatmapsimcommand.h [new file with mode: 0644]
heip.cpp [new file with mode: 0644]
heip.h [new file with mode: 0644]
hellinger.cpp [new file with mode: 0644]
hellinger.h [new file with mode: 0644]
helpcommand.cpp [new file with mode: 0644]
helpcommand.h [new file with mode: 0644]
homovacommand.cpp [new file with mode: 0644]
homovacommand.h [new file with mode: 0644]
ignoregaps.h [new file with mode: 0644]
indicatorcommand.cpp [new file with mode: 0644]
indicatorcommand.h [new file with mode: 0644]
inputdata.cpp [new file with mode: 0644]
inputdata.h [new file with mode: 0644]
interv.f [new file with mode: 0644]
intrv.f [new file with mode: 0644]
invsimpson.cpp [new file with mode: 0644]
invsimpson.h [new file with mode: 0644]
jackknife.cpp [new file with mode: 0644]
jackknife.h [new file with mode: 0644]
kmer.cpp [new file with mode: 0644]
kmer.hpp [new file with mode: 0644]
kmerdb.cpp [new file with mode: 0644]
kmerdb.hpp [new file with mode: 0644]
knn.cpp [new file with mode: 0644]
knn.h [new file with mode: 0644]
libshuff.cpp [new file with mode: 0644]
libshuff.h [new file with mode: 0644]
libshuffcommand.cpp [new file with mode: 0644]
libshuffcommand.h [new file with mode: 0644]
linearalgebra.cpp [new file with mode: 0644]
linearalgebra.h [new file with mode: 0644]
listseqscommand.cpp [new file with mode: 0644]
listseqscommand.h [new file with mode: 0644]
listvector.cpp [new file with mode: 0644]
listvector.hpp [new file with mode: 0644]
logsd.cpp [new file with mode: 0644]
logsd.h [new file with mode: 0644]
makebiomcommand.cpp [new file with mode: 0644]
makebiomcommand.h [new file with mode: 0644]
makefastqcommand.cpp [new file with mode: 0644]
makefastqcommand.h [new file with mode: 0644]
makefile [new file with mode: 0644]
makegroupcommand.cpp [new file with mode: 0644]
makegroupcommand.h [new file with mode: 0644]
maligner.cpp [new file with mode: 0644]
maligner.h [new file with mode: 0644]
manhattan.cpp [new file with mode: 0644]
manhattan.h [new file with mode: 0644]
mantelcommand.cpp [new file with mode: 0644]
mantelcommand.h [new file with mode: 0644]
matrixoutputcommand.cpp [new file with mode: 0644]
matrixoutputcommand.h [new file with mode: 0644]
memchi2.cpp [new file with mode: 0644]
memchi2.h [new file with mode: 0644]
memchord.cpp [new file with mode: 0644]
memchord.h [new file with mode: 0644]
memeuclidean.cpp [new file with mode: 0644]
memeuclidean.h [new file with mode: 0644]
mempearson.cpp [new file with mode: 0644]
mempearson.h [new file with mode: 0644]
mergefilecommand.cpp [new file with mode: 0644]
mergefilecommand.h [new file with mode: 0644]
mergegroupscommand.cpp [new file with mode: 0644]
mergegroupscommand.h [new file with mode: 0644]
metastatscommand.cpp [new file with mode: 0644]
metastatscommand.h [new file with mode: 0644]
mgclustercommand.cpp [new file with mode: 0644]
mgclustercommand.h [new file with mode: 0644]
mothur.cpp [new file with mode: 0644]
mothur.h [new file with mode: 0644]
mothurfisher.cpp [new file with mode: 0644]
mothurfisher.h [new file with mode: 0644]
mothurmetastats.cpp [new file with mode: 0644]
mothurmetastats.h [new file with mode: 0644]
mothurout.cpp [new file with mode: 0644]
mothurout.h [new file with mode: 0644]
myPerseus.cpp [new file with mode: 0644]
myPerseus.h [new file with mode: 0644]
myseqdist.cpp [new file with mode: 0644]
myseqdist.h [new file with mode: 0644]
nameassignment.cpp [new file with mode: 0644]
nameassignment.hpp [new file with mode: 0644]
nast.cpp [new file with mode: 0644]
nast.hpp [new file with mode: 0644]
nastreport.cpp [new file with mode: 0644]
nastreport.hpp [new file with mode: 0644]
needlemanoverlap.cpp [new file with mode: 0644]
needlemanoverlap.hpp [new file with mode: 0644]
nmdscommand.cpp [new file with mode: 0644]
nmdscommand.h [new file with mode: 0644]
noalign.cpp [new file with mode: 0644]
noalign.hpp [new file with mode: 0644]
nocommands.cpp [new file with mode: 0644]
nocommands.h [new file with mode: 0644]
normalizesharedcommand.cpp [new file with mode: 0644]
normalizesharedcommand.h [new file with mode: 0644]
npshannon.cpp [new file with mode: 0644]
npshannon.h [new file with mode: 0644]
nseqs.h [new file with mode: 0644]
observable.h [new file with mode: 0644]
odum.cpp [new file with mode: 0644]
odum.h [new file with mode: 0644]
onegapdist.h [new file with mode: 0644]
onegapignore.h [new file with mode: 0644]
optionparser.cpp [new file with mode: 0644]
optionparser.h [new file with mode: 0644]
ordervector.cpp [new file with mode: 0644]
ordervector.hpp [new file with mode: 0644]
otuassociationcommand.cpp [new file with mode: 0644]
otuassociationcommand.h [new file with mode: 0644]
otuhierarchycommand.cpp [new file with mode: 0644]
otuhierarchycommand.h [new file with mode: 0644]
overlap.cpp [new file with mode: 0644]
overlap.hpp [new file with mode: 0644]
pairwiseseqscommand.cpp [new file with mode: 0644]
pairwiseseqscommand.h [new file with mode: 0644]
parsefastaqcommand.cpp [new file with mode: 0644]
parsefastaqcommand.h [new file with mode: 0644]
parselistscommand.cpp [new file with mode: 0644]
parselistscommand.h [new file with mode: 0644]
parsimony.cpp [new file with mode: 0644]
parsimony.h [new file with mode: 0644]
parsimonycommand.cpp [new file with mode: 0644]
parsimonycommand.h [new file with mode: 0644]
pcacommand.cpp [new file with mode: 0644]
pcacommand.h [new file with mode: 0644]
pcoacommand.cpp [new file with mode: 0644]
pcoacommand.h [new file with mode: 0644]
pcrseqscommand.h [new file with mode: 0644]
phylodiversitycommand.cpp [new file with mode: 0644]
phylodiversitycommand.h [new file with mode: 0644]
phylosummary.cpp [new file with mode: 0644]
phylosummary.h [new file with mode: 0644]
phylotree.cpp [new file with mode: 0644]
phylotree.h [new file with mode: 0644]
phylotypecommand.cpp [new file with mode: 0644]
phylotypecommand.h [new file with mode: 0644]
pintail.cpp [new file with mode: 0644]
pintail.h [new file with mode: 0644]
pipelinepdscommand.cpp [new file with mode: 0644]
pipelinepdscommand.h [new file with mode: 0644]
prcseqscommand.cpp [new file with mode: 0644]
preclustercommand.cpp [new file with mode: 0644]
preclustercommand.h [new file with mode: 0644]
prng.cpp [new file with mode: 0644]
prng.h [new file with mode: 0644]
progress.cpp [new file with mode: 0644]
progress.hpp [new file with mode: 0644]
qstat.cpp [new file with mode: 0644]
qstat.h [new file with mode: 0644]
qualityscores.cpp [new file with mode: 0644]
qualityscores.h [new file with mode: 0644]
quitcommand.cpp [new file with mode: 0644]
quitcommand.h [new file with mode: 0644]
rabundvector.cpp [new file with mode: 0644]
rabundvector.hpp [new file with mode: 0644]
rarecalc.cpp [new file with mode: 0644]
rarecalc.h [new file with mode: 0644]
raredisplay.cpp [new file with mode: 0644]
raredisplay.h [new file with mode: 0644]
rarefact.cpp [new file with mode: 0644]
rarefact.h [new file with mode: 0644]
rarefactcommand.cpp [new file with mode: 0644]
rarefactcommand.h [new file with mode: 0644]
rarefactioncurvedata.h [new file with mode: 0644]
rarefactsharedcommand.cpp [new file with mode: 0644]
rarefactsharedcommand.h [new file with mode: 0644]
readblast.cpp [new file with mode: 0644]
readblast.h [new file with mode: 0644]
readcluster.cpp [new file with mode: 0644]
readcluster.h [new file with mode: 0644]
readcolumn.cpp [new file with mode: 0644]
readcolumn.h [new file with mode: 0644]
readdistcommand.cpp [new file with mode: 0644]
readdistcommand.h [new file with mode: 0644]
readmatrix.hpp [new file with mode: 0644]
readotucommand.cpp [new file with mode: 0644]
readotucommand.h [new file with mode: 0644]
readphylip.cpp [new file with mode: 0644]
readphylip.h [new file with mode: 0644]
readphylipvector.cpp [new file with mode: 0644]
readphylipvector.h [new file with mode: 0644]
readtree.cpp [new file with mode: 0644]
readtree.h [new file with mode: 0644]
readtreecommand.cpp [new file with mode: 0644]
readtreecommand.h [new file with mode: 0644]
refchimeratest.cpp [new file with mode: 0644]
refchimeratest.h [new file with mode: 0644]
referencedb.cpp [new file with mode: 0644]
referencedb.h [new file with mode: 0644]
removegroupscommand.cpp [new file with mode: 0644]
removegroupscommand.h [new file with mode: 0644]
removelineagecommand.cpp [new file with mode: 0644]
removelineagecommand.h [new file with mode: 0644]
removeotuscommand.cpp [new file with mode: 0644]
removeotuscommand.h [new file with mode: 0644]
removerarecommand.cpp [new file with mode: 0644]
removerarecommand.h [new file with mode: 0644]
removeseqscommand.cpp [new file with mode: 0644]
removeseqscommand.h [new file with mode: 0644]
reportfile.cpp [new file with mode: 0644]
reportfile.h [new file with mode: 0644]
reversecommand.cpp [new file with mode: 0644]
reversecommand.h [new file with mode: 0644]
sabundvector.cpp [new file with mode: 0644]
sabundvector.hpp [new file with mode: 0644]
screenseqscommand.cpp [new file with mode: 0644]
screenseqscommand.h [new file with mode: 0644]
secondarystructurecommand.cpp [new file with mode: 0644]
secondarystructurecommand.h [new file with mode: 0644]
sensspeccommand.cpp [new file with mode: 0644]
sensspeccommand.h [new file with mode: 0644]
seqerrorcommand.cpp [new file with mode: 0644]
seqerrorcommand.h [new file with mode: 0644]
seqnoise.cpp [new file with mode: 0644]
seqnoise.h [new file with mode: 0644]
seqsummarycommand.cpp [new file with mode: 0644]
seqsummarycommand.h [new file with mode: 0644]
sequence.cpp [new file with mode: 0644]
sequence.hpp [new file with mode: 0644]
sequencedb.cpp [new file with mode: 0644]
sequencedb.h [new file with mode: 0644]
sequenceparser.cpp [new file with mode: 0644]
sequenceparser.h [new file with mode: 0644]
setcurrentcommand.cpp [new file with mode: 0644]
setcurrentcommand.h [new file with mode: 0644]
setdircommand.cpp [new file with mode: 0644]
setdircommand.h [new file with mode: 0644]
setlogfilecommand.cpp [new file with mode: 0644]
setlogfilecommand.h [new file with mode: 0644]
sffinfocommand.cpp [new file with mode: 0644]
sffinfocommand.h [new file with mode: 0644]
sgram.f [new file with mode: 0644]
shannon.cpp [new file with mode: 0644]
shannon.h [new file with mode: 0644]
shannoneven.cpp [new file with mode: 0644]
shannoneven.h [new file with mode: 0644]
sharedace.cpp [new file with mode: 0644]
sharedace.h [new file with mode: 0644]
sharedanderbergs.cpp [new file with mode: 0644]
sharedanderbergs.h [new file with mode: 0644]
sharedbraycurtis.cpp [new file with mode: 0644]
sharedbraycurtis.h [new file with mode: 0644]
sharedchao1.cpp [new file with mode: 0644]
sharedchao1.h [new file with mode: 0644]
sharedcommand.cpp [new file with mode: 0644]
sharedcommand.h [new file with mode: 0644]
sharedjabund.cpp [new file with mode: 0644]
sharedjabund.h [new file with mode: 0644]
sharedjackknife.cpp [new file with mode: 0644]
sharedjackknife.h [new file with mode: 0644]
sharedjclass.cpp [new file with mode: 0644]
sharedjclass.h [new file with mode: 0644]
sharedjest.cpp [new file with mode: 0644]
sharedjest.h [new file with mode: 0644]
sharedkstest.cpp [new file with mode: 0644]
sharedkstest.h [new file with mode: 0644]
sharedkulczynski.cpp [new file with mode: 0644]
sharedkulczynski.h [new file with mode: 0644]
sharedkulczynskicody.cpp [new file with mode: 0644]
sharedkulczynskicody.h [new file with mode: 0644]
sharedlennon.cpp [new file with mode: 0644]
sharedlennon.h [new file with mode: 0644]
sharedlistvector.cpp [new file with mode: 0644]
sharedlistvector.h [new file with mode: 0644]
sharedmarczewski.cpp [new file with mode: 0644]
sharedmarczewski.h [new file with mode: 0644]
sharedmorisitahorn.cpp [new file with mode: 0644]
sharedmorisitahorn.h [new file with mode: 0644]
sharednseqs.h [new file with mode: 0644]
sharedochiai.cpp [new file with mode: 0644]
sharedochiai.h [new file with mode: 0644]
sharedordervector.cpp [new file with mode: 0644]
sharedordervector.h [new file with mode: 0644]
sharedrabundfloatvector.cpp [new file with mode: 0644]
sharedrabundfloatvector.h [new file with mode: 0644]
sharedrabundvector.cpp [new file with mode: 0644]
sharedrabundvector.h [new file with mode: 0644]
sharedsabundvector.cpp [new file with mode: 0644]
sharedsabundvector.h [new file with mode: 0644]
sharedsobs.cpp [new file with mode: 0644]
sharedsobs.h [new file with mode: 0644]
sharedsobscollectsummary.cpp [new file with mode: 0644]
sharedsobscollectsummary.h [new file with mode: 0644]
sharedsorabund.cpp [new file with mode: 0644]
sharedsorabund.h [new file with mode: 0644]
sharedsorclass.cpp [new file with mode: 0644]
sharedsorclass.h [new file with mode: 0644]
sharedsorest.cpp [new file with mode: 0644]
sharedsorest.h [new file with mode: 0644]
sharedthetan.cpp [new file with mode: 0644]
sharedthetan.h [new file with mode: 0644]
sharedthetayc.cpp [new file with mode: 0644]
sharedthetayc.h [new file with mode: 0644]
sharedutilities.cpp [new file with mode: 0644]
sharedutilities.h [new file with mode: 0644]
shen.cpp [new file with mode: 0644]
shen.h [new file with mode: 0644]
shhhercommand.cpp [new file with mode: 0644]
shhhercommand.h [new file with mode: 0644]
shhhseqscommand.cpp [new file with mode: 0644]
shhhseqscommand.h [new file with mode: 0644]
simpson.cpp [new file with mode: 0644]
simpson.h [new file with mode: 0644]
simpsoneven.cpp [new file with mode: 0644]
simpsoneven.h [new file with mode: 0644]
sinerp.f [new file with mode: 0644]
singlelinkage.cpp [new file with mode: 0644]
slayer.cpp [new file with mode: 0644]
slayer.h [new file with mode: 0644]
slibshuff.cpp [new file with mode: 0644]
slibshuff.h [new file with mode: 0644]
smithwilson.cpp [new file with mode: 0644]
smithwilson.h [new file with mode: 0644]
sobs.h [new file with mode: 0644]
soergel.cpp [new file with mode: 0644]
soergel.h [new file with mode: 0644]
solow.cpp [new file with mode: 0644]
solow.h [new file with mode: 0644]
sortseqscommand.cpp [new file with mode: 0644]
sortseqscommand.h [new file with mode: 0644]
source/ace.cpp [deleted file]
source/ace.h [deleted file]
source/aligncommand.cpp [deleted file]
source/aligncommand.h [deleted file]
source/alignment.cpp [deleted file]
source/alignment.hpp [deleted file]
source/alignmentcell.cpp [deleted file]
source/alignmentcell.hpp [deleted file]
source/alignmentdb.cpp [deleted file]
source/alignmentdb.h [deleted file]
source/amovacommand.cpp [deleted file]
source/amovacommand.h [deleted file]
source/anosimcommand.cpp [deleted file]
source/anosimcommand.h [deleted file]
source/averagelinkage.cpp [deleted file]
source/bayesian.cpp [deleted file]
source/bayesian.h [deleted file]
source/bellerophon.cpp [deleted file]
source/bellerophon.h [deleted file]
source/bergerparker.cpp [deleted file]
source/bergerparker.h [deleted file]
source/binsequencecommand.cpp [deleted file]
source/binsequencecommand.h [deleted file]
source/blastalign.cpp [deleted file]
source/blastalign.hpp [deleted file]
source/blastdb.cpp [deleted file]
source/blastdb.hpp [deleted file]
source/boneh.cpp [deleted file]
source/boneh.h [deleted file]
source/bootstrap.cpp [deleted file]
source/bootstrap.h [deleted file]
source/bsplvb.f [deleted file]
source/bsplvd.f [deleted file]
source/bstick.cpp [deleted file]
source/bstick.h [deleted file]
source/bvalue.f [deleted file]
source/calculator.cpp [deleted file]
source/calculator.h [deleted file]
source/canberra.cpp [deleted file]
source/canberra.h [deleted file]
source/catchallcommand.cpp [deleted file]
source/catchallcommand.h [deleted file]
source/ccode.cpp [deleted file]
source/ccode.h [deleted file]
source/chao1.cpp [deleted file]
source/chao1.h [deleted file]
source/chimera.cpp [deleted file]
source/chimera.h [deleted file]
source/chimerabellerophoncommand.cpp [deleted file]
source/chimerabellerophoncommand.h [deleted file]
source/chimeraccodecommand.cpp [deleted file]
source/chimeraccodecommand.h [deleted file]
source/chimeracheckcommand.cpp [deleted file]
source/chimeracheckcommand.h [deleted file]
source/chimeracheckrdp.cpp [deleted file]
source/chimeracheckrdp.h [deleted file]
source/chimeraperseuscommand.cpp [deleted file]
source/chimeraperseuscommand.h [deleted file]
source/chimerapintailcommand.cpp [deleted file]
source/chimerapintailcommand.h [deleted file]
source/chimerarealigner.cpp [deleted file]
source/chimerarealigner.h [deleted file]
source/chimeraslayer.cpp [deleted file]
source/chimeraslayer.h [deleted file]
source/chimeraslayercommand.cpp [deleted file]
source/chimeraslayercommand.h [deleted file]
source/chimerauchimecommand.cpp [deleted file]
source/chimerauchimecommand.h [deleted file]
source/chopseqscommand.cpp [deleted file]
source/chopseqscommand.h [deleted file]
source/classify.cpp [deleted file]
source/classify.h [deleted file]
source/classifyotucommand.cpp [deleted file]
source/classifyotucommand.h [deleted file]
source/classifyseqscommand.cpp [deleted file]
source/classifyseqscommand.h [deleted file]
source/classifytreecommand.cpp [deleted file]
source/classifytreecommand.h [deleted file]
source/clearcut.cpp [deleted file]
source/clearcut.h [deleted file]
source/clearcutcommand.cpp [deleted file]
source/clearcutcommand.h [deleted file]
source/clearmemorycommand.cpp [deleted file]
source/clearmemorycommand.h [deleted file]
source/cluster.cpp [deleted file]
source/cluster.hpp [deleted file]
source/clusterclassic.cpp [deleted file]
source/clusterclassic.h [deleted file]
source/clustercommand.cpp [deleted file]
source/clustercommand.h [deleted file]
source/clusterdoturcommand.cpp [deleted file]
source/clusterdoturcommand.h [deleted file]
source/clusterfragmentscommand.cpp [deleted file]
source/clusterfragmentscommand.h [deleted file]
source/clustersplitcommand.cpp [deleted file]
source/clustersplitcommand.h [deleted file]
source/cmdargs.cpp [deleted file]
source/cmdargs.h [deleted file]
source/collect.cpp [deleted file]
source/collect.h [deleted file]
source/collectcommand.cpp [deleted file]
source/collectcommand.h [deleted file]
source/collectdisplay.h [deleted file]
source/collectorscurvedata.h [deleted file]
source/collectsharedcommand.cpp [deleted file]
source/collectsharedcommand.h [deleted file]
source/command.hpp [deleted file]
source/commandfactory.cpp [deleted file]
source/commandfactory.hpp [deleted file]
source/commandoptionparser.cpp [deleted file]
source/commandoptionparser.hpp [deleted file]
source/commandparameter.h [deleted file]
source/common.h [deleted file]
source/completelinkage.cpp [deleted file]
source/consensus.cpp [deleted file]
source/consensus.h [deleted file]
source/consensusseqscommand.cpp [deleted file]
source/consensusseqscommand.h [deleted file]
source/cooccurrencecommand.cpp [deleted file]
source/cooccurrencecommand.h [deleted file]
source/corraxescommand.cpp [deleted file]
source/corraxescommand.h [deleted file]
source/countgroupscommand.cpp [deleted file]
source/countgroupscommand.h [deleted file]
source/countseqscommand.cpp [deleted file]
source/countseqscommand.h [deleted file]
source/coverage.cpp [deleted file]
source/coverage.h [deleted file]
source/createdatabasecommand.cpp [deleted file]
source/createdatabasecommand.h [deleted file]
source/currentfile.h [deleted file]
source/database.cpp [deleted file]
source/database.hpp [deleted file]
source/datavector.hpp [deleted file]
source/daxpy.f [deleted file]
source/dayhoff.h [deleted file]
source/ddot.f [deleted file]
source/decalc.cpp [deleted file]
source/decalc.h [deleted file]
source/deconvolutecommand.cpp [deleted file]
source/deconvolutecommand.h [deleted file]
source/degapseqscommand.cpp [deleted file]
source/degapseqscommand.h [deleted file]
source/deuniqueseqscommand.cpp [deleted file]
source/deuniqueseqscommand.h [deleted file]
source/deuniquetreecommand.cpp [deleted file]
source/deuniquetreecommand.h [deleted file]
source/display.h [deleted file]
source/dist.h [deleted file]
source/distancecommand.cpp [deleted file]
source/distancecommand.h [deleted file]
source/distancedb.cpp [deleted file]
source/distancedb.hpp [deleted file]
source/distclearcut.cpp [deleted file]
source/distclearcut.h [deleted file]
source/dlibshuff.cpp [deleted file]
source/dlibshuff.h [deleted file]
source/dmat.cpp [deleted file]
source/dmat.h [deleted file]
source/dpbfa.f [deleted file]
source/dpbsl.f [deleted file]
source/eachgapdist.h [deleted file]
source/eachgapdistignorens.h [deleted file]
source/eachgapignore.h [deleted file]
source/efron.cpp [deleted file]
source/efron.h [deleted file]
source/endiannessmacros.h [deleted file]
source/engine.cpp [deleted file]
source/engine.hpp [deleted file]
source/fasta.cpp [deleted file]
source/fasta.h [deleted file]
source/fastamap.cpp [deleted file]
source/fastamap.h [deleted file]
source/fileoutput.cpp [deleted file]
source/fileoutput.h [deleted file]
source/filters.h [deleted file]
source/filterseqscommand.cpp [deleted file]
source/filterseqscommand.h [deleted file]
source/flowdata.cpp [deleted file]
source/flowdata.h [deleted file]
source/formatcolumn.cpp [deleted file]
source/formatcolumn.h [deleted file]
source/formatmatrix.h [deleted file]
source/formatphylip.cpp [deleted file]
source/formatphylip.h [deleted file]
source/fullmatrix.cpp [deleted file]
source/fullmatrix.h [deleted file]
source/geom.cpp [deleted file]
source/geom.h [deleted file]
source/getcommandinfocommand.cpp [deleted file]
source/getcommandinfocommand.h [deleted file]
source/getcurrentcommand.cpp [deleted file]
source/getcurrentcommand.h [deleted file]
source/getgroupcommand.cpp [deleted file]
source/getgroupcommand.h [deleted file]
source/getgroupscommand.cpp [deleted file]
source/getgroupscommand.h [deleted file]
source/getlabelcommand.cpp [deleted file]
source/getlabelcommand.h [deleted file]
source/getlineagecommand.cpp [deleted file]
source/getlineagecommand.h [deleted file]
source/getlistcountcommand.cpp [deleted file]
source/getlistcountcommand.h [deleted file]
source/getopt_long.cpp [deleted file]
source/getopt_long.h [deleted file]
source/getoturepcommand.cpp [deleted file]
source/getoturepcommand.h [deleted file]
source/getotuscommand.cpp [deleted file]
source/getotuscommand.h [deleted file]
source/getrabundcommand.cpp [deleted file]
source/getrabundcommand.h [deleted file]
source/getrelabundcommand.cpp [deleted file]
source/getrelabundcommand.h [deleted file]
source/getsabundcommand.cpp [deleted file]
source/getsabundcommand.h [deleted file]
source/getseqscommand.cpp [deleted file]
source/getseqscommand.h [deleted file]
source/getsharedotucommand.cpp [deleted file]
source/getsharedotucommand.h [deleted file]
source/goodscoverage.cpp [deleted file]
source/goodscoverage.h [deleted file]
source/gotohoverlap.cpp [deleted file]
source/gotohoverlap.hpp [deleted file]
source/gower.cpp [deleted file]
source/gower.h [deleted file]
source/groupmap.cpp [deleted file]
source/groupmap.h [deleted file]
source/hamming.cpp [deleted file]
source/hamming.h [deleted file]
source/hcluster.cpp [deleted file]
source/hcluster.h [deleted file]
source/hclustercommand.cpp [deleted file]
source/hclustercommand.h [deleted file]
source/heatmap.cpp [deleted file]
source/heatmap.h [deleted file]
source/heatmapcommand.cpp [deleted file]
source/heatmapcommand.h [deleted file]
source/heatmapsim.cpp [deleted file]
source/heatmapsim.h [deleted file]
source/heatmapsimcommand.cpp [deleted file]
source/heatmapsimcommand.h [deleted file]
source/heip.cpp [deleted file]
source/heip.h [deleted file]
source/hellinger.cpp [deleted file]
source/hellinger.h [deleted file]
source/helpcommand.cpp [deleted file]
source/helpcommand.h [deleted file]
source/homovacommand.cpp [deleted file]
source/homovacommand.h [deleted file]
source/ignoregaps.h [deleted file]
source/indicatorcommand.cpp [deleted file]
source/indicatorcommand.h [deleted file]
source/inputdata.cpp [deleted file]
source/inputdata.h [deleted file]
source/interv.f [deleted file]
source/intrv.f [deleted file]
source/invsimpson.cpp [deleted file]
source/invsimpson.h [deleted file]
source/jackknife.cpp [deleted file]
source/jackknife.h [deleted file]
source/kmer.cpp [deleted file]
source/kmer.hpp [deleted file]
source/kmerdb.cpp [deleted file]
source/kmerdb.hpp [deleted file]
source/knn.cpp [deleted file]
source/knn.h [deleted file]
source/libshuff.cpp [deleted file]
source/libshuff.h [deleted file]
source/libshuffcommand.cpp [deleted file]
source/libshuffcommand.h [deleted file]
source/linearalgebra.cpp [deleted file]
source/linearalgebra.h [deleted file]
source/listseqscommand.cpp [deleted file]
source/listseqscommand.h [deleted file]
source/listvector.cpp [deleted file]
source/listvector.hpp [deleted file]
source/logsd.cpp [deleted file]
source/logsd.h [deleted file]
source/makebiomcommand.cpp [deleted file]
source/makebiomcommand.h [deleted file]
source/makefastqcommand.cpp [deleted file]
source/makefastqcommand.h [deleted file]
source/makefile [deleted file]
source/makegroupcommand.cpp [deleted file]
source/makegroupcommand.h [deleted file]
source/maligner.cpp [deleted file]
source/maligner.h [deleted file]
source/manhattan.cpp [deleted file]
source/manhattan.h [deleted file]
source/mantelcommand.cpp [deleted file]
source/mantelcommand.h [deleted file]
source/matrixoutputcommand.cpp [deleted file]
source/matrixoutputcommand.h [deleted file]
source/memchi2.cpp [deleted file]
source/memchi2.h [deleted file]
source/memchord.cpp [deleted file]
source/memchord.h [deleted file]
source/memeuclidean.cpp [deleted file]
source/memeuclidean.h [deleted file]
source/mempearson.cpp [deleted file]
source/mempearson.h [deleted file]
source/mergefilecommand.cpp [deleted file]
source/mergefilecommand.h [deleted file]
source/mergegroupscommand.cpp [deleted file]
source/mergegroupscommand.h [deleted file]
source/metastatscommand.cpp [deleted file]
source/metastatscommand.h [deleted file]
source/mgclustercommand.cpp [deleted file]
source/mgclustercommand.h [deleted file]
source/mothur.cpp [deleted file]
source/mothur.h [deleted file]
source/mothurfisher.cpp [deleted file]
source/mothurfisher.h [deleted file]
source/mothurmetastats.cpp [deleted file]
source/mothurmetastats.h [deleted file]
source/mothurout.cpp [deleted file]
source/mothurout.h [deleted file]
source/myPerseus.cpp [deleted file]
source/myPerseus.h [deleted file]
source/myseqdist.cpp [deleted file]
source/myseqdist.h [deleted file]
source/nameassignment.cpp [deleted file]
source/nameassignment.hpp [deleted file]
source/nast.cpp [deleted file]
source/nast.hpp [deleted file]
source/nastreport.cpp [deleted file]
source/nastreport.hpp [deleted file]
source/needlemanoverlap.cpp [deleted file]
source/needlemanoverlap.hpp [deleted file]
source/nmdscommand.cpp [deleted file]
source/nmdscommand.h [deleted file]
source/noalign.cpp [deleted file]
source/noalign.hpp [deleted file]
source/nocommands.cpp [deleted file]
source/nocommands.h [deleted file]
source/normalizesharedcommand.cpp [deleted file]
source/normalizesharedcommand.h [deleted file]
source/npshannon.cpp [deleted file]
source/npshannon.h [deleted file]
source/nseqs.h [deleted file]
source/observable.h [deleted file]
source/odum.cpp [deleted file]
source/odum.h [deleted file]
source/onegapdist.h [deleted file]
source/onegapignore.h [deleted file]
source/optionparser.cpp [deleted file]
source/optionparser.h [deleted file]
source/ordervector.cpp [deleted file]
source/ordervector.hpp [deleted file]
source/otuassociationcommand.cpp [deleted file]
source/otuassociationcommand.h [deleted file]
source/otuhierarchycommand.cpp [deleted file]
source/otuhierarchycommand.h [deleted file]
source/overlap.cpp [deleted file]
source/overlap.hpp [deleted file]
source/pairwiseseqscommand.cpp [deleted file]
source/pairwiseseqscommand.h [deleted file]
source/parsefastaqcommand.cpp [deleted file]
source/parsefastaqcommand.h [deleted file]
source/parselistscommand.cpp [deleted file]
source/parselistscommand.h [deleted file]
source/parsimony.cpp [deleted file]
source/parsimony.h [deleted file]
source/parsimonycommand.cpp [deleted file]
source/parsimonycommand.h [deleted file]
source/pcacommand.cpp [deleted file]
source/pcacommand.h [deleted file]
source/pcoacommand.cpp [deleted file]
source/pcoacommand.h [deleted file]
source/pcrseqscommand.h [deleted file]
source/phylodiversitycommand.cpp [deleted file]
source/phylodiversitycommand.h [deleted file]
source/phylosummary.cpp [deleted file]
source/phylosummary.h [deleted file]
source/phylotree.cpp [deleted file]
source/phylotree.h [deleted file]
source/phylotypecommand.cpp [deleted file]
source/phylotypecommand.h [deleted file]
source/pintail.cpp [deleted file]
source/pintail.h [deleted file]
source/pipelinepdscommand.cpp [deleted file]
source/pipelinepdscommand.h [deleted file]
source/prcseqscommand.cpp [deleted file]
source/preclustercommand.cpp [deleted file]
source/preclustercommand.h [deleted file]
source/prng.cpp [deleted file]
source/prng.h [deleted file]
source/progress.cpp [deleted file]
source/progress.hpp [deleted file]
source/qstat.cpp [deleted file]
source/qstat.h [deleted file]
source/qualityscores.cpp [deleted file]
source/qualityscores.h [deleted file]
source/quitcommand.cpp [deleted file]
source/quitcommand.h [deleted file]
source/rabundvector.cpp [deleted file]
source/rabundvector.hpp [deleted file]
source/rarecalc.cpp [deleted file]
source/rarecalc.h [deleted file]
source/raredisplay.cpp [deleted file]
source/raredisplay.h [deleted file]
source/rarefact.cpp [deleted file]
source/rarefact.h [deleted file]
source/rarefactcommand.cpp [deleted file]
source/rarefactcommand.h [deleted file]
source/rarefactioncurvedata.h [deleted file]
source/rarefactsharedcommand.cpp [deleted file]
source/rarefactsharedcommand.h [deleted file]
source/readblast.cpp [deleted file]
source/readblast.h [deleted file]
source/readcluster.cpp [deleted file]
source/readcluster.h [deleted file]
source/readcolumn.cpp [deleted file]
source/readcolumn.h [deleted file]
source/readdistcommand.cpp [deleted file]
source/readdistcommand.h [deleted file]
source/readmatrix.hpp [deleted file]
source/readotucommand.cpp [deleted file]
source/readotucommand.h [deleted file]
source/readphylip.cpp [deleted file]
source/readphylip.h [deleted file]
source/readphylipvector.cpp [deleted file]
source/readphylipvector.h [deleted file]
source/readtree.cpp [deleted file]
source/readtree.h [deleted file]
source/readtreecommand.cpp [deleted file]
source/readtreecommand.h [deleted file]
source/refchimeratest.cpp [deleted file]
source/refchimeratest.h [deleted file]
source/referencedb.cpp [deleted file]
source/referencedb.h [deleted file]
source/removegroupscommand.cpp [deleted file]
source/removegroupscommand.h [deleted file]
source/removelineagecommand.cpp [deleted file]
source/removelineagecommand.h [deleted file]
source/removeotuscommand.cpp [deleted file]
source/removeotuscommand.h [deleted file]
source/removerarecommand.cpp [deleted file]
source/removerarecommand.h [deleted file]
source/removeseqscommand.cpp [deleted file]
source/removeseqscommand.h [deleted file]
source/reportfile.cpp [deleted file]
source/reportfile.h [deleted file]
source/reversecommand.cpp [deleted file]
source/reversecommand.h [deleted file]
source/sabundvector.cpp [deleted file]
source/sabundvector.hpp [deleted file]
source/screenseqscommand.cpp [deleted file]
source/screenseqscommand.h [deleted file]
source/secondarystructurecommand.cpp [deleted file]
source/secondarystructurecommand.h [deleted file]
source/sensspeccommand.cpp [deleted file]
source/sensspeccommand.h [deleted file]
source/seqerrorcommand.cpp [deleted file]
source/seqerrorcommand.h [deleted file]
source/seqnoise.cpp [deleted file]
source/seqnoise.h [deleted file]
source/seqsummarycommand.cpp [deleted file]
source/seqsummarycommand.h [deleted file]
source/sequence.cpp [deleted file]
source/sequence.hpp [deleted file]
source/sequencedb.cpp [deleted file]
source/sequencedb.h [deleted file]
source/sequenceparser.cpp [deleted file]
source/sequenceparser.h [deleted file]
source/setcurrentcommand.cpp [deleted file]
source/setcurrentcommand.h [deleted file]
source/setdircommand.cpp [deleted file]
source/setdircommand.h [deleted file]
source/setlogfilecommand.cpp [deleted file]
source/setlogfilecommand.h [deleted file]
source/sffinfocommand.cpp [deleted file]
source/sffinfocommand.h [deleted file]
source/sgram.f [deleted file]
source/shannon.cpp [deleted file]
source/shannon.h [deleted file]
source/shannoneven.cpp [deleted file]
source/shannoneven.h [deleted file]
source/sharedace.cpp [deleted file]
source/sharedace.h [deleted file]
source/sharedanderbergs.cpp [deleted file]
source/sharedanderbergs.h [deleted file]
source/sharedbraycurtis.cpp [deleted file]
source/sharedbraycurtis.h [deleted file]
source/sharedchao1.cpp [deleted file]
source/sharedchao1.h [deleted file]
source/sharedcommand.cpp [deleted file]
source/sharedcommand.h [deleted file]
source/sharedjabund.cpp [deleted file]
source/sharedjabund.h [deleted file]
source/sharedjackknife.cpp [deleted file]
source/sharedjackknife.h [deleted file]
source/sharedjclass.cpp [deleted file]
source/sharedjclass.h [deleted file]
source/sharedjest.cpp [deleted file]
source/sharedjest.h [deleted file]
source/sharedkstest.cpp [deleted file]
source/sharedkstest.h [deleted file]
source/sharedkulczynski.cpp [deleted file]
source/sharedkulczynski.h [deleted file]
source/sharedkulczynskicody.cpp [deleted file]
source/sharedkulczynskicody.h [deleted file]
source/sharedlennon.cpp [deleted file]
source/sharedlennon.h [deleted file]
source/sharedlistvector.cpp [deleted file]
source/sharedlistvector.h [deleted file]
source/sharedmarczewski.cpp [deleted file]
source/sharedmarczewski.h [deleted file]
source/sharedmorisitahorn.cpp [deleted file]
source/sharedmorisitahorn.h [deleted file]
source/sharednseqs.h [deleted file]
source/sharedochiai.cpp [deleted file]
source/sharedochiai.h [deleted file]
source/sharedordervector.cpp [deleted file]
source/sharedordervector.h [deleted file]
source/sharedrabundfloatvector.cpp [deleted file]
source/sharedrabundfloatvector.h [deleted file]
source/sharedrabundvector.cpp [deleted file]
source/sharedrabundvector.h [deleted file]
source/sharedsabundvector.cpp [deleted file]
source/sharedsabundvector.h [deleted file]
source/sharedsobs.cpp [deleted file]
source/sharedsobs.h [deleted file]
source/sharedsobscollectsummary.cpp [deleted file]
source/sharedsobscollectsummary.h [deleted file]
source/sharedsorabund.cpp [deleted file]
source/sharedsorabund.h [deleted file]
source/sharedsorclass.cpp [deleted file]
source/sharedsorclass.h [deleted file]
source/sharedsorest.cpp [deleted file]
source/sharedsorest.h [deleted file]
source/sharedthetan.cpp [deleted file]
source/sharedthetan.h [deleted file]
source/sharedthetayc.cpp [deleted file]
source/sharedthetayc.h [deleted file]
source/sharedutilities.cpp [deleted file]
source/sharedutilities.h [deleted file]
source/shen.cpp [deleted file]
source/shen.h [deleted file]
source/shhhercommand.cpp [deleted file]
source/shhhercommand.h [deleted file]
source/shhhseqscommand.cpp [deleted file]
source/shhhseqscommand.h [deleted file]
source/simpson.cpp [deleted file]
source/simpson.h [deleted file]
source/simpsoneven.cpp [deleted file]
source/simpsoneven.h [deleted file]
source/sinerp.f [deleted file]
source/singlelinkage.cpp [deleted file]
source/slayer.cpp [deleted file]
source/slayer.h [deleted file]
source/slibshuff.cpp [deleted file]
source/slibshuff.h [deleted file]
source/smithwilson.cpp [deleted file]
source/smithwilson.h [deleted file]
source/sobs.h [deleted file]
source/soergel.cpp [deleted file]
source/soergel.h [deleted file]
source/solow.cpp [deleted file]
source/solow.h [deleted file]
source/sortseqscommand.cpp [deleted file]
source/sortseqscommand.h [deleted file]
source/sparsematrix.cpp [deleted file]
source/sparsematrix.hpp [deleted file]
source/spearman.cpp [deleted file]
source/spearman.h [deleted file]
source/speciesprofile.cpp [deleted file]
source/speciesprofile.h [deleted file]
source/spline.cpp [deleted file]
source/spline.h [deleted file]
source/splitabundcommand.cpp [deleted file]
source/splitabundcommand.h [deleted file]
source/splitgroupscommand.cpp [deleted file]
source/splitgroupscommand.h [deleted file]
source/splitmatrix.cpp [deleted file]
source/splitmatrix.h [deleted file]
source/sslvrg.f [deleted file]
source/structchi2.cpp [deleted file]
source/structchi2.h [deleted file]
source/structchord.cpp [deleted file]
source/structchord.h [deleted file]
source/structeuclidean.cpp [deleted file]
source/structeuclidean.h [deleted file]
source/structkulczynski.cpp [deleted file]
source/structkulczynski.h [deleted file]
source/structpearson.cpp [deleted file]
source/structpearson.h [deleted file]
source/stxwx.f [deleted file]
source/subsample.cpp [deleted file]
source/subsample.h [deleted file]
source/subsamplecommand.cpp [deleted file]
source/subsamplecommand.h [deleted file]
source/suffixdb.cpp [deleted file]
source/suffixdb.hpp [deleted file]
source/suffixnodes.cpp [deleted file]
source/suffixnodes.hpp [deleted file]
source/suffixtree.cpp [deleted file]
source/suffixtree.hpp [deleted file]
source/summarycommand.cpp [deleted file]
source/summarycommand.h [deleted file]
source/summaryqualcommand.cpp [deleted file]
source/summaryqualcommand.h [deleted file]
source/summarysharedcommand.cpp [deleted file]
source/summarysharedcommand.h [deleted file]
source/summarytaxcommand.cpp [deleted file]
source/summarytaxcommand.h [deleted file]
source/systemcommand.cpp [deleted file]
source/systemcommand.h [deleted file]
source/taxonomyequalizer.cpp [deleted file]
source/taxonomyequalizer.h [deleted file]
source/tree.cpp [deleted file]
source/tree.h [deleted file]
source/treecalculator.h [deleted file]
source/treegroupscommand.cpp [deleted file]
source/treegroupscommand.h [deleted file]
source/treemap.cpp [deleted file]
source/treemap.h [deleted file]
source/treenode.cpp [deleted file]
source/treenode.h [deleted file]
source/treereader.cpp [deleted file]
source/treereader.h [deleted file]
source/trialSwap2.cpp [deleted file]
source/trialswap2.h [deleted file]
source/trimflowscommand.cpp [deleted file]
source/trimflowscommand.h [deleted file]
source/trimoligos.cpp [deleted file]
source/trimoligos.h [deleted file]
source/trimseqscommand.cpp [deleted file]
source/trimseqscommand.h [deleted file]
source/unifracunweightedcommand.cpp [deleted file]
source/unifracunweightedcommand.h [deleted file]
source/unifracweightedcommand.cpp [deleted file]
source/unifracweightedcommand.h [deleted file]
source/unweighted.cpp [deleted file]
source/unweighted.h [deleted file]
source/uvest.cpp [deleted file]
source/uvest.h [deleted file]
source/validcalculator.cpp [deleted file]
source/validcalculator.h [deleted file]
source/validparameter.cpp [deleted file]
source/validparameter.h [deleted file]
source/venn.cpp [deleted file]
source/venn.h [deleted file]
source/venncommand.cpp [deleted file]
source/venncommand.h [deleted file]
source/weighted.cpp [deleted file]
source/weighted.h [deleted file]
source/weightedlinkage.cpp [deleted file]
source/whittaker.cpp [deleted file]
source/whittaker.h [deleted file]
sparsematrix.cpp [new file with mode: 0644]
sparsematrix.hpp [new file with mode: 0644]
spearman.cpp [new file with mode: 0644]
spearman.h [new file with mode: 0644]
speciesprofile.cpp [new file with mode: 0644]
speciesprofile.h [new file with mode: 0644]
spline.cpp [new file with mode: 0644]
spline.h [new file with mode: 0644]
splitabundcommand.cpp [new file with mode: 0644]
splitabundcommand.h [new file with mode: 0644]
splitgroupscommand.cpp [new file with mode: 0644]
splitgroupscommand.h [new file with mode: 0644]
splitmatrix.cpp [new file with mode: 0644]
splitmatrix.h [new file with mode: 0644]
sslvrg.f [new file with mode: 0644]
structchi2.cpp [new file with mode: 0644]
structchi2.h [new file with mode: 0644]
structchord.cpp [new file with mode: 0644]
structchord.h [new file with mode: 0644]
structeuclidean.cpp [new file with mode: 0644]
structeuclidean.h [new file with mode: 0644]
structkulczynski.cpp [new file with mode: 0644]
structkulczynski.h [new file with mode: 0644]
structpearson.cpp [new file with mode: 0644]
structpearson.h [new file with mode: 0644]
stxwx.f [new file with mode: 0644]
subsample.cpp [new file with mode: 0644]
subsample.h [new file with mode: 0644]
subsamplecommand.cpp [new file with mode: 0644]
subsamplecommand.h [new file with mode: 0644]
suffixdb.cpp [new file with mode: 0644]
suffixdb.hpp [new file with mode: 0644]
suffixnodes.cpp [new file with mode: 0644]
suffixnodes.hpp [new file with mode: 0644]
suffixtree.cpp [new file with mode: 0644]
suffixtree.hpp [new file with mode: 0644]
summarycommand.cpp [new file with mode: 0644]
summarycommand.h [new file with mode: 0644]
summaryqualcommand.cpp [new file with mode: 0644]
summaryqualcommand.h [new file with mode: 0644]
summarysharedcommand.cpp [new file with mode: 0644]
summarysharedcommand.h [new file with mode: 0644]
summarytaxcommand.cpp [new file with mode: 0644]
summarytaxcommand.h [new file with mode: 0644]
systemcommand.cpp [new file with mode: 0644]
systemcommand.h [new file with mode: 0644]
taxonomyequalizer.cpp [new file with mode: 0644]
taxonomyequalizer.h [new file with mode: 0644]
tree.cpp [new file with mode: 0644]
tree.h [new file with mode: 0644]
treecalculator.h [new file with mode: 0644]
treegroupscommand.cpp [new file with mode: 0644]
treegroupscommand.h [new file with mode: 0644]
treemap.cpp [new file with mode: 0644]
treemap.h [new file with mode: 0644]
treenode.cpp [new file with mode: 0644]
treenode.h [new file with mode: 0644]
treereader.cpp [new file with mode: 0644]
treereader.h [new file with mode: 0644]
trialSwap2.cpp [new file with mode: 0644]
trialswap2.h [new file with mode: 0644]
trimflowscommand.cpp [new file with mode: 0644]
trimflowscommand.h [new file with mode: 0644]
trimoligos.cpp [new file with mode: 0644]
trimoligos.h [new file with mode: 0644]
trimseqscommand.cpp [new file with mode: 0644]
trimseqscommand.h [new file with mode: 0644]
unifracunweightedcommand.cpp [new file with mode: 0644]
unifracunweightedcommand.h [new file with mode: 0644]
unifracweightedcommand.cpp [new file with mode: 0644]
unifracweightedcommand.h [new file with mode: 0644]
unweighted.cpp [new file with mode: 0644]
unweighted.h [new file with mode: 0644]
uvest.cpp [new file with mode: 0644]
uvest.h [new file with mode: 0644]
validcalculator.cpp [new file with mode: 0644]
validcalculator.h [new file with mode: 0644]
validparameter.cpp [new file with mode: 0644]
validparameter.h [new file with mode: 0644]
venn.cpp [new file with mode: 0644]
venn.h [new file with mode: 0644]
venncommand.cpp [new file with mode: 0644]
venncommand.h [new file with mode: 0644]
weighted.cpp [new file with mode: 0644]
weighted.h [new file with mode: 0644]
weightedlinkage.cpp [new file with mode: 0644]
whittaker.cpp [new file with mode: 0644]
whittaker.h [new file with mode: 0644]