git.donarmstrong.com Git - mothur.git/commit

]> git.donarmstrong.com Git - mothur.git/commit

author	Sarah Westcott <mothur.westcott@gmail.com>
	Fri, 27 Jul 2012 13:42:37 +0000 (09:42 -0400)
committer	Sarah Westcott <mothur.westcott@gmail.com>
	Fri, 27 Jul 2012 13:42:37 +0000 (09:42 -0400)
commit	0cefb55a2616975bd4a144fc345693695ffc9bb6
tree	598dfb2ef00ef67c7c78f4aa09202243d4d1b32f	tree \| snapshot
parent	44f3a3c81a34fdee62550d98838a4b421e8df08e	commit \| diff

added sparseDistanceMatrix class. Modified cluster commands to use the new sparse distance matrix class. cut cluster time by 55% and reduced memory usage by 50%.

34 files changed:

Mothur.xcodeproj/project.pbxproj		diff \| blob \| history
averagelinkage.cpp		diff \| blob \| history
calculator.h		diff \| blob \| history
cluster.cpp		diff \| blob \| history
cluster.hpp		diff \| blob \| history
clusterclassic.h		diff \| blob \| history
clustercommand.cpp		diff \| blob \| history
clustercommand.h		diff \| blob \| history
clustersplitcommand.cpp		diff \| blob \| history
clustersplitcommand.h		diff \| blob \| history
completelinkage.cpp		diff \| blob \| history
getoturepcommand.cpp		diff \| blob \| history
getoturepcommand.h		diff \| blob \| history
getsharedotucommand.cpp		diff \| blob \| history
mgclustercommand.cpp		diff \| blob \| history
mothur.h		diff \| blob \| history
mothurout.cpp		diff \| blob \| history
mothurout.h		diff \| blob \| history
phylodiversitycommand.cpp		diff \| blob \| history
readblast.cpp		diff \| blob \| history
readblast.h		diff \| blob \| history
readcolumn.cpp		diff \| blob \| history
readmatrix.hpp		diff \| blob \| history
readphylip.cpp		diff \| blob \| history
seqerrorcommand.cpp		diff \| blob \| history
sequence.cpp		diff \| blob \| history
shhhercommand.cpp		diff \| blob \| history
singlelinkage.cpp		diff \| blob \| history
sparsedistancematrix.cpp	[new file with mode: 0644]	blob
sparsedistancematrix.h	[new file with mode: 0644]	blob
treegroupscommand.cpp		diff \| blob \| history
treegroupscommand.h		diff \| blob \| history
trimseqscommand.cpp		diff \| blob \| history
weightedlinkage.cpp		diff \| blob \| history

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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