added kruskal.wallis command. added worked on make.lefse. working of lefse command...
authorSarah Westcott <mothur.westcott@gmail.com>
Mon, 24 Jun 2013 18:31:29 +0000 (14:31 -0400)
committerSarah Westcott <mothur.westcott@gmail.com>
Mon, 24 Jun 2013 18:31:29 +0000 (14:31 -0400)
commitb25ede2ad307ae76f8a610443e0ec3ec69621ce7
tree9c4a845a9cb28ffa3dbe0c6fcdb9c73a6583a95f
parentb8ff3bca0560a53832723f4621fcddef7ec4e499
added kruskal.wallis command. added worked on make.lefse. working of lefse command. fixed bug in trim.oligos when there was an exact match to paired primers or barcodes that overlapped causing the sequence to be shorter than the barcodes and primers.  added design map class. added kruskal wallis and wilcoxon functions to linear algebra class.
17 files changed:
Mothur.xcodeproj/project.pbxproj
commandfactory.cpp
designmap.cpp [new file with mode: 0644]
designmap.h [new file with mode: 0644]
kruskalwalliscommand.cpp
kruskalwalliscommand.h
lefsecommand.cpp
lefsecommand.h
linearalgebra.cpp
linearalgebra.h
makecontigscommand.cpp
makelefsecommand.cpp
mothur.h
mothurout.cpp
mothurout.h
setlogfilecommand.cpp
trimoligos.cpp