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Complain when BAM cannot be open. Severe bug fixed in -m haploid calling.
[samtools.git] / Makefile
2012-05-18 Petr DanecekMerge branch 'master' of github.com:samtools/samtools blob | commitdiff | raw
2012-05-17 Heng Liadded bamshuf from htslib blob | commitdiff | raw
2012-04-23 Petr DanecekResolved merge conflict blob | commitdiff | raw | diff to current
2012-04-17 Heng Lir572: added "bedcov" command blob | commitdiff | raw | diff to current
2012-04-04 Petr DanecekMerge remote branch 'main/master' blob | commitdiff | raw | diff to current
2012-03-29 Heng LiMerge branch 'master' of github.com:samtools/samtools... blob | commitdiff | raw | diff to current
2012-03-20 Heng LiMerge branch 'master' into mt blob | commitdiff | raw | diff to current
2012-03-18 Heng Liuse conditional variable blob | commitdiff | raw | diff to current
2012-03-18 Heng Limulti-threading working on toy examples blob | commitdiff | raw | diff to current
2012-03-18 Heng Liupdated with the latest bgzf library blob | commitdiff | raw | diff to current
2012-03-09 Heng LiIncoporated changes from Nils Homer. blob | commitdiff | raw | diff to current
2011-09-23 Heng Liconverted padded SAM to unpadded SAM blob | commitdiff | raw | diff to current
2011-06-03 Heng Li * 0.1.16-dev (r969:252) blob | commitdiff | raw | diff to current
2011-04-22 Heng LiRemoved the pileup command blob | commitdiff | raw | diff to current
2011-04-01 Heng LiAdded an example of using mpileup blob | commitdiff | raw | diff to current
2011-03-30 Heng Li * added BED support to samtools view and mpileup and... blob | commitdiff | raw | diff to current
2011-03-18 Heng Li * allow to change the compression level in BAM output blob | commitdiff | raw | diff to current
2011-03-01 Heng LiRelease samtools-0.1.13 (r926:134) blob | commitdiff | raw | diff to current
2011-02-28 Heng Li * put version number in bam.h blob | commitdiff | raw | diff to current
2011-02-25 Heng Liadded the phase command blob | commitdiff | raw | diff to current
2010-12-28 On behalf of John... System libraries go *after* user libraries in link... blob | commitdiff | raw | diff to current
2010-11-10 Heng Liminor change to makefile blob | commitdiff | raw | diff to current
2010-11-10 Heng Li * samtools-0.1.9-8 (r807) blob | commitdiff | raw | diff to current
2010-11-08 Heng Liprepare for the indel caller. It is not ready yet. blob | commitdiff | raw | diff to current
2010-11-02 Heng LiSeparate kaln and kprobaln as I am preparing further... blob | commitdiff | raw | diff to current
2010-09-14 Heng Lifixed a bug in realignment blob | commitdiff | raw | diff to current
2010-08-23 Heng Li * samtools-0.1.8-12 (r692) blob | commitdiff | raw | diff to current
2010-08-23 Heng Liremove VCF output in mpileup blob | commitdiff | raw | diff to current
2010-08-20 Heng Liadded revised MAQ error model blob | commitdiff | raw | diff to current
2010-08-04 Heng Lifixed compilation error blob | commitdiff | raw | diff to current
2010-08-04 Heng Limove bcftools to samtools blob | commitdiff | raw | diff to current
2010-08-02 Heng Li * samtools-0.1.8-9 (r649) blob | commitdiff | raw | diff to current
2010-08-02 Heng LiGenerate binary VCF blob | commitdiff | raw | diff to current
2010-07-14 Heng Li * added mutli-sample framework. It is not working... blob | commitdiff | raw | diff to current
2010-06-14 Heng Liadded Makefile targets to compile shared/dynamic library blob | commitdiff | raw | diff to current
2010-06-11 Heng Li * samtools-0.1.7-9 (r586) blob | commitdiff | raw | diff to current
2009-12-10 On behalf of John... Depend on libbam.a rather than the phony target, so... blob | commitdiff | raw | diff to current
2009-12-10 On behalf of John... Fix a bug in compiling bgzip: this also needs knetfile... blob | commitdiff | raw | diff to current
2009-11-30 On behalf of John... Put libraries at the end, so they can resolve reference... blob | commitdiff | raw | diff to current
2009-11-30 On behalf of John... Also clean *.exe (for Cygwin users using this makefile). blob | commitdiff | raw | diff to current
2009-11-16 Heng LiFixed a bug in compiling razip blob | commitdiff | raw | diff to current
2009-10-26 Heng Li * samtools-0.1.6-18 (r493) blob | commitdiff | raw | diff to current
2009-10-24 Heng Li * This revision is SERIOUSLY BUGGY. Please NOT use it. blob | commitdiff | raw | diff to current
2009-10-08 Heng LiUnfinished modification. Please do not use this revision... blob | commitdiff | raw | diff to current
2009-07-16 Heng LiSorry. The old Makefile is for PDCurses... blob | commitdiff | raw | diff to current
2009-07-16 Heng Li * samtools-0.1.5-9 (r405) blob | commitdiff | raw | diff to current
2009-07-16 Heng Li * samtools-0.1.5-8 (r404) blob | commitdiff | raw | diff to current
2009-07-07 Heng LiRelease samtools-0.1.5a (for compatibility with Bio... blob | commitdiff | raw | diff to current
2009-07-02 On behalf of Bob... Introduced LIBPATH variable so this could be overridden... blob | commitdiff | raw | diff to current
2009-06-25 Heng Li * samtools-0.1.4-16 (r360) blob | commitdiff | raw | diff to current
2009-06-13 Heng Li * samtools-0.1.4-11 (r346) blob | commitdiff | raw | diff to current
2009-06-13 Heng Li * samtools-0.1.4-10 (r341) blob | commitdiff | raw | diff to current
2009-06-13 Heng Li * samtools-0.1.4-9 (r340) blob | commitdiff | raw | diff to current
2009-06-12 Heng Li * no changes to samtools itself blob | commitdiff | raw | diff to current
2009-06-12 Heng Lifixed minor things in Makefile blob | commitdiff | raw | diff to current
2009-06-12 Heng Li * update Makefile blob | commitdiff | raw | diff to current
2009-06-12 Heng Li * added zlib-1.2.3 as razip requires that blob | commitdiff | raw | diff to current
2009-04-28 Heng Li * samtools-0.1.3-7 (r246) blob | commitdiff | raw
2009-04-24 Heng Li * samtools-0.1.3-3 (r240) blob | commitdiff | raw | diff to current
2009-03-24 Heng Lirename Makefile.std as Makefile. GNU building systerm... blob | commitdiff | raw | diff to current
2009-03-24 Heng Li * samtools-0.1.2-17 blob | commitdiff | raw
2009-03-24 Heng Li * samtools-0.1.2-16 blob | commitdiff | raw | diff to current
2009-03-02 Heng Li * samtools-0.1.2-10 blob | commitdiff | raw | diff to current
2009-02-02 On behalf of Bob... Pass LIBS to recursive targets to facilitate building... blob | commitdiff | raw | diff to current
2009-01-29 Heng Li * samtools-0.1.2-1 blob | commitdiff | raw | diff to current
2009-01-22 Heng Li * Merge from branches/dev/ blob | commitdiff | raw | diff to current
2008-12-22 Heng LiCreate trunk copy blob | commitdiff | raw | diff to current
Mirror of samtools with my branches