git.donarmstrong.com Git - samtools.git/commit

]> git.donarmstrong.com Git - samtools.git/commit

author	Heng Li <lh3@live.co.uk>
	Fri, 18 Mar 2011 20:33:51 +0000 (20:33 +0000)
committer	Heng Li <lh3@live.co.uk>
	Fri, 18 Mar 2011 20:33:51 +0000 (20:33 +0000)
commit	d382711a770f67a72b9af3bfd98a88fbced34f64
tree	78a436479afcaba49143cd41686dbcded8160d29	tree \| snapshot
parent	9cbf6422499eaa8dbb09ff9b873306202be5872f	commit \| diff

* allow to change the compression level in BAM output
* use compress level 1 in sorting
* association test
* concatenate BAMs
* allow to threshold on max depth in INDEL calling

18 files changed:

Makefile		diff \| blob \| history
NEWS		diff \| blob \| history
bam.h		diff \| blob \| history
bam_plcmd.c		diff \| blob \| history
bam_sort.c		diff \| blob \| history
bamtk.c		diff \| blob \| history
bcftools/bcf.h		diff \| blob \| history
bcftools/bcf.tex		diff \| blob \| history
bcftools/bcftools.1		diff \| blob \| history
bcftools/bcfutils.c		diff \| blob \| history
bcftools/call1.c		diff \| blob \| history
bcftools/prob1.c		diff \| blob \| history
bcftools/prob1.h		diff \| blob \| history
bgzf.c		diff \| blob \| history
bgzf.h		diff \| blob \| history
sam.c		diff \| blob \| history
sam_view.c		diff \| blob \| history
samtools.1		diff \| blob \| history

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