git.donarmstrong.com Git - samtools.git/commit

]> git.donarmstrong.com Git - samtools.git/commit

author	Heng Li <lh3@live.co.uk>
	Wed, 30 Mar 2011 18:35:53 +0000 (18:35 +0000)
committer	Heng Li <lh3@live.co.uk>
	Wed, 30 Mar 2011 18:35:53 +0000 (18:35 +0000)
commit	674ffee7adcfc928f5039777180206fdebc5539b
tree	26b709b1d8cd7040a48a043c7024129449af41b6	tree \| snapshot
parent	8ef16f0ffefe94ead2c9e367ebcb66490fdea2cb	commit \| diff

* added BED support to samtools view and mpileup and bcftools view
* ML estimate of allele frequency in two groups
* better error message given inconsisten RG labels
* compute all-pair r^2

13 files changed:

Makefile		diff \| blob \| history
bam.h		diff \| blob \| history
bam_plcmd.c		diff \| blob \| history
bam_sort.c		diff \| blob \| history
bcftools/Makefile		diff \| blob \| history
bcftools/call1.c		diff \| blob \| history
bcftools/ld.c		diff \| blob \| history
bcftools/main.c		diff \| blob \| history
bcftools/prob1.c		diff \| blob \| history
bcftools/prob1.h		diff \| blob \| history
bedidx.c	[new file with mode: 0644]	blob
sam_view.c		diff \| blob \| history
sample.c		diff \| blob \| history

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