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]> git.donarmstrong.com Git - mothur.git/history - trimseqscommand.cpp

2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	blob \| commitdiff \| raw
2012-04-11	Sarah Westcott	added subsample and consensus parameters to unifrac...	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	initialized numLinkers and numSpacers in trim.seqs...	blob \| commitdiff \| raw \| diff to current
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	blob \| commitdiff \| raw \| diff to current
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	blob \| commitdiff \| raw \| diff to current
2012-03-06	Sarah Westcott	changed sffinfo flow default to true. fixed bug in...	blob \| commitdiff \| raw \| diff to current
2012-02-24	Sarah Westcott	added linker and spacer to trim.flows	blob \| commitdiff \| raw \| diff to current
2012-02-24	Sarah Westcott	paralellized trim.seqs for windows. fixed bug in trim...	blob \| commitdiff \| raw \| diff to current
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	blob \| commitdiff \| raw \| diff to current
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	blob \| commitdiff \| raw \| diff to current
2012-01-04	westcott	1.23.0	blob \| commitdiff \| raw \| diff to current
2011-12-23	westcott	added qvalues to metastats. fixed bug with chimera...	blob \| commitdiff \| raw \| diff to current
2011-12-06	westcott	metastats in progress	blob \| commitdiff \| raw \| diff to current
2011-09-13	westcott	working on windows paralellization, added trimOligos...	blob \| commitdiff \| raw \| diff to current
2011-07-18	westcott	changed normalize.shared and sub.sample commands to...	blob \| commitdiff \| raw \| diff to current
2011-07-15	westcott	rewrote metastats command in c++, added mothurRemove...	blob \| commitdiff \| raw \| diff to current
2011-06-28	westcott	small bug with trimming of quality scores over a window...	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-06-14	westcott	working on current change	blob \| commitdiff \| raw \| diff to current
2011-05-27	westcott	captured stdout from system command, fixed bug in trim...	blob \| commitdiff \| raw \| diff to current
2011-05-24	westcott	paralellized seq.error and dist.shared added some error...	blob \| commitdiff \| raw \| diff to current
2011-05-20	westcott	finished adding the names option to trim.seqs	blob \| commitdiff \| raw \| diff to current
2011-05-18	westcott	added name option to trim.seqs	blob \| commitdiff \| raw \| diff to current
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	blob \| commitdiff \| raw \| diff to current
2011-05-18	westcott	fixed bug with trim.seqs allfiles=t	blob \| commitdiff \| raw \| diff to current
2011-05-11	westcott	working on citations	blob \| commitdiff \| raw \| diff to current
2011-05-10	westcott	added citation function to commands	blob \| commitdiff \| raw \| diff to current
2011-05-09	westcott	1.19.0	blob \| commitdiff \| raw \| diff to current
2011-05-09	westcott	1.19.0	blob \| commitdiff \| raw \| diff to current
2011-05-04	westcott	trim.seqs fix of gobble	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	added getCommandInfoCommand for gui	blob \| commitdiff \| raw \| diff to current
2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	blob \| commitdiff \| raw \| diff to current
2011-03-30	westcott	fixed problem with sffinfo that caused a file mismatch...	blob \| commitdiff \| raw \| diff to current
2011-03-22	westcott	fixed trim.seqs group counts by adding back in the...	blob \| commitdiff \| raw \| diff to current
2011-03-16	westcott	added set.current and get.current commands and modified...	blob \| commitdiff \| raw \| diff to current
2011-03-07	pschloss	fix trim.seqs / qualscores bug	blob \| commitdiff \| raw \| diff to current
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	blob \| commitdiff \| raw \| diff to current
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	blob \| commitdiff \| raw \| diff to current
2011-03-04	westcott	bug fixes	blob \| commitdiff \| raw \| diff to current
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	blob \| commitdiff \| raw \| diff to current
2011-02-10	pschloss	modified reverse.seqs and qualscores.cpp	blob \| commitdiff \| raw \| diff to current
2011-02-09	pschloss	mods to trim.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-09	pschloss	mods to trim.seqs	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added [ERROR] flag if command aborts	blob \| commitdiff \| raw \| diff to current
2011-02-08	westcott	added homova command	blob \| commitdiff \| raw \| diff to current
2011-01-25	westcott	mods for 1.16	blob \| commitdiff \| raw \| diff to current
2011-01-14	westcott	fixed trim.seqs bug with qtrim parameter and added...	blob \| commitdiff \| raw \| diff to current
2011-01-05	westcott	removed various build warnings	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-23	pschloss	addition of trim.flows	blob \| commitdiff \| raw \| diff to current
2010-12-22	westcott	fixed trim.seqs weird characters thing	blob \| commitdiff \| raw \| diff to current
2010-12-20	pschloss	pat's changes to seq.error command	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	fixed bug with trim.seqs- when a file is blank for...	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	get.oturep change and trim.seqs fix	blob \| commitdiff \| raw \| diff to current
2010-12-07	westcott	consensus.seqs can now find a consensus on a whole...	blob \| commitdiff \| raw \| diff to current
2010-12-07	westcott	fixed indicator grouping problem	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	modified trim.seqs to speed up the append with multiple...	blob \| commitdiff \| raw \| diff to current
2010-11-22	westcott	added group option to trim.seqs so you can provide...	blob \| commitdiff \| raw \| diff to current
2010-11-05	westcott	cluster.split fix	blob \| commitdiff \| raw \| diff to current
2010-11-02	westcott	fixed bug with normalize.shared, printed out numbins...	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	fixes while testing	blob \| commitdiff \| raw \| diff to current
2010-10-19	westcott	fixed phylo.diversity and made trim.seqs with allfiles...	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-09-17	westcott	bug fixes	blob \| commitdiff \| raw \| diff to current
2010-09-08	westcott	testing 1.13.0	blob \| commitdiff \| raw \| diff to current
2010-09-04	westcott	working on testing for 1.13	blob \| commitdiff \| raw \| diff to current
2010-09-03	westcott	working on testing	blob \| commitdiff \| raw \| diff to current
2010-08-30	westcott	sped up unifrac weighted.	blob \| commitdiff \| raw \| diff to current
2010-08-24	westcott	moved utilities out of mothur.h and into mothurOut...	blob \| commitdiff \| raw \| diff to current
2010-08-20	westcott	pre.cluster	blob \| commitdiff \| raw \| diff to current
2010-08-20	westcott	changed file divide for trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-07-28	pschloss	pat's slight modifications to trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-07-22	westcott	fixes while testing 1.12.0	blob \| commitdiff \| raw \| diff to current
2010-07-14	pschloss	pat's changes to trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-07-14	westcott	started work on sffinfo command. fixed bug across...	blob \| commitdiff \| raw \| diff to current
2010-07-06	pschloss	sens.spec changes	blob \| commitdiff \| raw \| diff to current
2010-07-06	westcott	fixed trim.seqs bug	blob \| commitdiff \| raw \| diff to current
2010-07-06	westcott	rechecking in	blob \| commitdiff \| raw \| diff to current
2010-07-06	westcott	trim.seqs couts	blob \| commitdiff \| raw \| diff to current
2010-06-30	westcott	modified trim.seqs to split by primer name if primer...	blob \| commitdiff \| raw \| diff to current
2010-06-18	westcott	removed blast files generated by chimera.slayer, altere...	blob \| commitdiff \| raw \| diff to current
2010-06-18	westcott	fixed problem with trim.seqs writing over files if...	blob \| commitdiff \| raw \| diff to current
2010-06-17	pschloss	made a small mod to the alignment parameters in trim...	blob \| commitdiff \| raw \| diff to current
2010-06-15	westcott	changed how we count sequences in a fastafile to allow...	blob \| commitdiff \| raw \| diff to current
2010-06-14	westcott	fixed bug in cluster.split	blob \| commitdiff \| raw \| diff to current
2010-06-12	pschloss	pat's mod to trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-27	westcott	fixed project	blob \| commitdiff \| raw \| diff to current
2010-05-26	pschloss	fixed bugs with trim.seqs and bdiffs	blob \| commitdiff \| raw \| diff to current
2010-05-14	westcott	1.10.0	blob \| commitdiff \| raw \| diff to current
2010-05-10	westcott	worked on trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-10	westcott	worked on trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-10	pschloss	pds - modified strip barcode funcrtion in trimseqscommand	blob \| commitdiff \| raw \| diff to current
2010-05-07	westcott	modified trim.seqs to account for primers of different...	blob \| commitdiff \| raw \| diff to current
2010-05-07	westcott	added diffs to trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-07	westcott	working on trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-05-07	westcott	changed groupfile in classify.seqs to reflect multiple...	blob \| commitdiff \| raw \| diff to current
2010-05-04	westcott	fixed bug that caused bayesian cutoff not to work if...	blob \| commitdiff \| raw \| diff to current
2010-04-30	westcott	paralellized trim.seqs	blob \| commitdiff \| raw \| diff to current
2010-03-03	westcott	added checks for ^C to quit command instead of program	blob \| commitdiff \| raw \| diff to current
2010-02-26	westcott	created mothurOut class to handle logfiles	blob \| commitdiff \| raw \| diff to current
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